Array 1 308375-309744 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBQ010000006.1 Salmonella enterica isolate 5400_08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 308375 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 308436 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 308497 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 308558 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 308619 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 308680 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 308741 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 308802 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 308863 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 308924 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 308985 29 100.0 32 ............................. TCCGGCAAAAATCCAGACCGACGGCGCAATGG 309046 29 100.0 32 ............................. TTAATTAATCATTTTGTTTAAATCCCGGATCA 309107 29 100.0 32 ............................. TGTTCGCGAACTGTTCACAAAATTGATTAAAT 309168 29 100.0 32 ............................. TACGGAAACATACGGCGCCCATTGCTTTTTCA 309229 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 309290 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 309351 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 309412 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 309473 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 309534 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 309595 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 309656 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 309717 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 326013-329093 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBQ010000006.1 Salmonella enterica isolate 5400_08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 326013 29 100.0 32 ............................. ACACACAGGCAAATACCGGCGTCGCAATTTAC 326074 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 326135 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 326196 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 326257 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 326318 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 326379 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 326440 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 326501 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 326562 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 326623 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 326684 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 326745 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 326806 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 326867 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 326928 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 326989 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 327050 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 327111 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 327172 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 327233 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 327294 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 327355 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 327416 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 327477 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 327538 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 327599 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 327660 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 327721 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 327782 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 327843 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 327904 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 327965 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 328026 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 328087 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 328148 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 328209 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 328270 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 328332 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 328393 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 328454 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 328515 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 328576 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 328637 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 328698 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 328759 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 328820 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 328881 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 328942 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 329003 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 329064 29 93.1 0 A...........T................ | A [329090] ========== ====== ====== ====== ============================= ================================= ================== 51 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //