Array 1 646592-646945 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQVV01000001.1 Clostridium botulinum strain It260 CbotD0006-I260_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 646592 28 100.0 39 ............................ CAAGGGTATTTAAAAGCAATATAGAAGTAATATTATAGA 646659 28 100.0 36 ............................ ATATGATTTCTTAGTAGATATGCAAACGGGAGATGC 646723 28 100.0 36 ............................ TAATCAAGATTTAACCATTCTTTAGCTTCTCGTAGT 646787 28 92.9 36 .............AG............. TTGGAAAGCTTACTAGATTTCTTACCTATATCGGGT 646851 28 92.9 37 ......A............C........ AAGTTAATTCTTTTGAATTTAATATCATCTGTTACAC 646916 28 89.3 0 ......A......A.............A | TA [646938] ========== ====== ====== ====== ============================ ======================================= ================== 6 28 95.8 37 TGAACATTAACATGAGATGTATTTAAAT # Left flank : TTATAACAATTGCAGGATCAGGAATATTGTATAAAAATTATTTTACTAATATTGATTCAAATAGCTATTTATCAAGCAAAGATGAATCTGAAAGAAGTATTTTCTGTCATGAAGATGATAAAAGCAGTAAAAATACCCACAGTTTTGATTTTAAAAAATTCGATGGCAAGTGGTCTTTAATGGAATTTACATCAAGCAAAGGCAAGCGGTAAATTTGATGTAAGTGTAAATTCAGATAGAAACATAGATATTTCTCATATAGATTTTTTTGATTAATTATATGCACTGATGCTATGAATAAAAACAAAAAAATTCTAAAAGTTTTTCCAACCGCATTTAATTTTAAAACCTATCCTAAGCATTGCAATGTAAGGCTTAAGATAGGTTTTGTTTATGTTTTTCTGAAAAATCACAAATGGCTGGAAAAATTTTTTTAATCATTGTAAAATCAAATGCTATATGCTATTCTTAAAATTAAGGAATGGCTAATTTACTATGGA # Right flank : AATGGTAGTTGTAGCTTATGTTATAGCTATTATTTTTCAATATTTAGAGGAATATTTTTACATATGTAGAATATTTGTATATAGTCCCTTTAATTCATTATCAAATCTTTCTTGAATAAAAAGGAGCCTGTGTATGCAGTGGGGGCTCCTTTTTTATATTATTTGAAGGAATTTTTTAACATTTATAGAATATTAAATATAACGGCTTCCCAATAGGTTGATTATAGACCTCCTTGCTTAAGCAAAAAGAACCCCAATAAAAAGGGGTTCTTTTTGTATGGATTTATATATTGGTGCTATGTATTGGTCTATTTTTACTATATCCAGATGTAGAAAAGTTAATCAGTAAGAAATATATAAGATGTAAATTTTTGAATATATTTCTATAATGAGAGTACCTTATTTTTTATTTTTTTGATAAAAATTTTAAGAAAATTAGCAATTTATTAATAAAAATTTAAAATAATTATTTAATTTCATTTTAAAGTTGTATCAGAATG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 316934-316641 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQVV01000003.1 Clostridium botulinum strain It260 CbotD0006-I260_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 316933 30 100.0 35 .............................. CCTCATTTTTGAATTATGAATTACTTATTGTTTTG 316868 30 100.0 36 .............................. AATAGAAGGGCTTAACTATAGATTCCCGATACTTGA 316802 30 100.0 37 .............................. TAATCTTCTAAGTAAGGTATCATTACTGACTTAACCT 316735 30 100.0 35 .............................. ACTACCTAATGTTCTTTATTTTAAAATCACAAGTA 316670 30 86.7 0 ...A...........A....A........C | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 97.3 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : CAATACTAGGAGTAGCTAAAGGACTGCTGATGTATAGTACAAAATTGACATAATATGATATACAATGTTTGTGTTCATCAACTAAGAAAGACATTTCTACCTTTCTTAGTTGATGAACAATTTTCTTATTTAACGACTGAACTATAAAATCAAATAATTTTTCTAAATGCTGTATTATTCAGAAATGAACTTTACGGCATTTTTATGTCGCAATACAATTATATTGTAAAGTTAGATGTATTTAAGTAGTAAATATAAATCTGAGATTTAGTGTGAGGCGCTTACTCATTTGAGGAAGCGAGAAGGAGTTCTACTGACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTTGAGCGTTGACACATAAGGCTTATGGTAGGTTTTTATTTTATATTTGTAAAAAAGCAAAACTACTTGGAAAACTTTCTTTAAAATCTTGTAAAATCAATGGTTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : TGTTTAGTTACTGCAGATATTCGTTTTTAATATTAACATATGAATTAAAAATTAATATGATATATGACAAAAATTATTAAGAGTCTTAGAAGAATCTAAGGCTTTTTATTTTATGTAAAGTTTTAAAATGGAATATAATAGCTAATTAACTTATTATTAATAAAAATAATAATATTTTTAAAATATAAGTAGAATAATTAGTTATATTAACTAAAGGGTGTATGATATAATATAGATAAATTTGTATAAAGACATGTATAAATGGAATTTTGGGAACTGATTGTAACAGTAGATGATAGACCTTGGCTGCAAAATAATGGGGATTTAGATTTATTTACGCGTAGATTGGAAGATAATTTGGAAAAGAAATATAAAAAACTTTTTTAATGAAGATATAGATGTAAAGGATAAATTTATAAAGAGCATAGAGTTTAAAAATAGAGAGCCAATGCATTACGACTATAAAGGTATAAAGTTATTAGCAAATAAGGTAAGTATAC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 320949-320724 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQVV01000003.1 Clostridium botulinum strain It260 CbotD0006-I260_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 320948 30 96.7 35 ............G................. TGAAAAACATTAGAACCACATCCACAAGGGTTTCT 320883 30 100.0 35 .............................. GCTAAATTCTCATAAGAACCACGCCATCTGTCCTC 320818 30 96.7 35 ........T..................... TTATGATATGATTTTATTTGTTTAAGAGTATCTGC 320753 30 93.3 0 ........T................C.... | ========== ====== ====== ====== ============================== =================================== ================== 4 30 96.7 35 GTTGAACAATAACATGAGATGTATTTAAAT # Left flank : ATCCCGCATGGCATCAATTTTATCATAGGCATAGGTTAATCCAATAGTTAAAAAAAGTTCTGCGGTTATATCAGAATGAGTAAGGGTGTAGCGTCCTCCTAGAATAGGTTCTGTATTAGTTACTCCATCTCTAAATTCCACTGAAAGTTTTTCAGGGTTCAATTTGCTCATTTAATCCCTTCCCGTACAATATTTCTCATAGAACTATTATATGATTAGGTTAAGGAAGTTGTCATTTAGGTAGCTATAAAATTTATTATAATATCATTAGCGCTATATAAATTTATAAAAAGAATATTAAAATAAAAGAAAAGAACAAAAATTTTTCCAACCGACTTTAAGTTGAAAATTTATGGAGACTATTGATATATAAGGGTTTAGGTTAGGTTTTTTATGTAAATTTGAAAATATCCTAATCGGTTGGAAAATTTTATTTATAACCTTGTAAAATCAATGGTTTTATGATATTCTTGAAATTAAGGAATGGCTATTTTACTATG # Right flank : ACTATATCTCCTCTTGTAGCGGGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTATTTTTGGGGTATTGACTTGTAGTCTAAAGTTGCACCATAAGAAGGTTCATTAAACACATGTGGAAGAACAAGTAATAGATACAGCACTTGCTATTGATACGGTGAATTGTATTACAAATAACGAAGGTTTTATTTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTCCTAAGTTGTATCATAACCTAAGTAAATTATAAAAATATATGTTTATATTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGAGAAATTTCATTATAAACTTAATAGGGAAGTCTTAGATTTTTTATTGCATGAGATTATACGGAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACCTACAATGATAAAGTAGGTCCTGATTTTTATTAAA # Questionable array : NO Score: 3.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 424887-424398 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQVV01000003.1 Clostridium botulinum strain It260 CbotD0006-I260_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 424886 30 100.0 35 .............................. GTAGTTAAAATTGGTTCATATTCTACACCTATTTT 424821 30 96.7 36 ........A..................... TAGTTAATATCCTCGAGAGTTCTTAACCAAAAATTC 424755 30 100.0 35 .............................. CCTAATTGTTGAACATTAGTATTACTCTTTTGTGA 424690 30 100.0 36 .............................. TATACTTAATCATTAATTCCCTAAATAGAGAAGTCA 424624 30 90.0 34 ........T.......A..C.......... ATTCTTTATAGTATTGTAGTAATAATTCATTAAA 424560 30 93.3 35 ........T.......G............. TTTTGCTTATTTTACTTGTGCATTTACTACAATAT 424495 30 93.3 36 ........A.......A............. TTAAAACCTTGAAAATCTTCTAAAACTATAATGTTA 424429 30 86.7 0 ........T......GA............A | TA [424402] ========== ====== ====== ====== ============================== ==================================== ================== 8 30 95.0 35 GTTGAACAGTAACATATGATGTATTTAAAT # Left flank : TATGGCGTGTCGCAATTGTGGTTATACCATACCATATAATAATTGATTTTAATAACGATTACTAGATAAAAGAAAAAAGATTATTTTTTTATTATTCAAAGGAATTTTTTACATTTGTAGAATATTAAATACAATGCTTCCTAATAGGTTAAATATAAATGTACTTATTTAAACAAAAGAACCCCAATAAATGAGGTTCTTTTTGTATTGGTGCTGTATATTGGCTTATTTTTATTACATCCAGATGTAGAAAAATTAATCAATCAGAAATATATAAGATATTAAGTTTTAGAGGTATTTTCCTTCATGGAAATACCTTTTATTTTTCCAACCTACTTTAATTTTAAAACCTATCTTAGTCATTGCTATACAATGCTTTAGGGTAGGTTTTCTATATAAATTTTAAATTATCTCAATTGGTTGGAAAATTTTCTTTAGAATCTTGTAAAATCAATACTTCTATGTTATCCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : ATAGTAATTGTAGCCTATGCTATAGTTATTATTTTTTTATTATTCAAAGGAATTTTTTACATTTGTAGAATACTAAATATAAGATTTTCTATAAGGTATTGACCTTCTCCAAAATACAAAAGAACCCCAATAAACGGGGTTCTTTTTGCGTGGATTTATATATATTGGTATAGTGTCTTGGGCTGTTTTTATTATATCCAGATATAATAAATTTAATCACACATAAAGTTGTTACATAAGTTAAGCATTATGAGAATCATCTATAGTGTTAACTTTGTTGAACTCATTTAAAAAATCTTCATATAAGTTTTCCCTATGTTTTTGGCTTTGGCCTGTTATGATTTCAACTAATTTACAATGTTCTATAGCATTTTTTATGATAGTTCCCATATCTAAATTATCATTTGGTGATTCTAAATAACTAAGTTCACCCATAATTTTTTTACGTTGATTTTCAGGATATTTTGATATAGTATTTTGATAAGCTTCTATTATGGATT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATATGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 517359-517064 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQVV01000003.1 Clostridium botulinum strain It260 CbotD0006-I260_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 517358 29 93.1 37 ..............GA............. TTCTTTACATTTGATGTTATAGAACTTTCACTGTTAA 517292 29 93.1 36 ..............GA............. TCTTTTTTAGTGGTCTTGTATCGTTATGAGCTTCTA 517227 29 100.0 37 ............................. TCTAATTGTGTAGTATCAAATCCATTAGCCATAATTG 517161 29 100.0 38 ............................. AGTCTAATTATTATAACAGCATTTTCTGTGTAAGGCTG 517094 29 89.7 0 .......A.......A............A | TA [517068] ========== ====== ====== ====== ============================= ====================================== ================== 5 29 95.2 37 TTGAACATTAACATAGGATGTATTTAAAT # Left flank : CTAATGCTATTGTTAAAGGACTAGTAGGGAAAACTACAAGCAATAGCACACCAAGCGAACCAACAAATAACAATAATAGTTGGATTAATTTAGATGGAAGAACAGGTACAATAAATACACCAAGCGGTGTAAATGTTAGAGAAAAGAAATCAACTTCTAGCAGAATATTAGGTGCTTTACCTAATAGTTCAAAGGTTAACTTATATCGTAAAGAAGGAGATTGGATACATATATATTATCCACCACATGGGGGTTATGTGTATGCTAAATATGTAAGATATTAAGTTTTAGAGGTATTTTCCTTCATGGAAATACCTTTTATTTTTCCAACCTACTTTAATTTTAAAACCTATCTTAGTCATTGCTATACAATGCTTTAGGGTAGGTTTTCTATATAAATTTTAAATTATCTCAATTGGTTGGAAAATTTTCTTTAGAATCTTGTAAAATCAATACTTCTATGTTATCCTTAAAAATAAGGAATGGCTATTTTACTATGA # Right flank : ATGGTAGTTGTAGCTTATGCCCTATAGCTATTATTTTTTGCATTTAAAGGAATTTTCTAACATTTATAGAATATTAAATATAACGGCTTCCCAATAGGTTAATTATAGACCTCCTTGCTTAAGCAAAAAGAACCCCAATAAAAAGGGGTTCTTTTTGCATGGGATTTTCTATATATTGGTGCTATGTTTTGGTCTATTTTTATTATATCCAGGTATAATAATCTTAATCATGTATAGAGGAATTATATGAAATATGTAGAATAATACAAATTAAGTTCGCAACTATGCTTAATTACATAAGCACTAAGTCATAAACTTAAAGCCCTGGGATAAACCAGGGCTCTTTTTAAAATTACTCTTTGCTATCTTTTTTCATTTATATTAAGATATTCCATTAATCCAGCCTGTAATATTTGCGAAAAATTAACTTTGTTTTCCTCAGCCATTTTATTCAACCATGAAGGTATTGTCAATGTTTTTTTTACTGCTTTATTATCGTA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACATTAACATAGGATGTATTTAAAT # Alternate repeat : TTGAACATTAACATGAGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //