Array 1 690040-691460 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063275.1 Streptococcus thermophilus strain DMST-H2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 690040 36 100.0 30 .................................... ATCTTGTAGAAGCTGAACTCCCTGGTATTC 690106 36 100.0 30 .................................... GGAACTGTTGTATAATATTTATACTATTAA 690172 36 100.0 30 .................................... ACGACTTGCCAGACGGTGAGTCTAAAGATT 690238 36 100.0 30 .................................... AAGAGCAAGCTGAAGGTAGCTTCACAATCC 690304 36 100.0 30 .................................... CTGCATCTGGCTTCAATAGTGCCAATATGC 690370 36 100.0 30 .................................... TACCCATTGCAATTATTTCTTCACCTTTGT 690436 36 100.0 29 .................................... TGAAATAGCTTGCTACCCTTACGAATACA 690501 36 100.0 30 .................................... ATCAAGCTATAACAGAGTTAGTTATTGATT 690567 36 100.0 30 .................................... CTGGACTTGCCTTGGCACATCTTGAATATG 690633 36 100.0 30 .................................... CCGTTCTGACTAGCAGTTGGATTCCCACCA 690699 36 100.0 30 .................................... ATGTCACCAATGACTAGAGAACCTACGCTG 690765 36 100.0 30 .................................... TTATTCTTGGAATTATTACAGACCCTACTA 690831 36 100.0 30 .................................... TTATTCTTGGAATTATTACAGACCCTACTA 690897 36 100.0 30 .................................... GCTTTCATTATATCACTTACTCATAAATCT 690963 36 100.0 30 .................................... TTGACAGCCAAATAGAGAAGATCAAAAGAC 691029 36 100.0 30 .................................... TCACGCAGAAAAAGGCAGAAAAGGCAGTCA 691095 36 100.0 30 .................................... AAAATGTATTATTTGGTAGTATCTTATGAG 691161 36 100.0 30 .................................... AGGTCGAAGTTTGGGAAATTGACTTGGCTG 691227 36 100.0 30 .................................... TTGATAAGTCTTATATTGTCACAGGAAAGA 691293 36 100.0 30 .................................... TAGACATCTACGACTTATTTTTAAAGGCAG 691359 36 100.0 30 .................................... GACGTGTCAACACGGTTAGTTAACATTGAT 691425 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGAGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGATTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGGGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTCGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 1416272-1414519 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063275.1 Streptococcus thermophilus strain DMST-H2 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1416271 36 100.0 30 .................................... TGACATCCCAAGAGACTCTAATGGTGAAAA 1416205 36 100.0 30 .................................... TTCTTGGAATTATTACCGATCCAACAACTA 1416139 36 100.0 31 .................................... TCACTTCCATGATATGTGACACGATGCTGTT 1416072 36 100.0 30 .................................... CCATCTGCACCGGGAAATCCTAATGGTCAG 1416006 36 100.0 30 .................................... GGAATTAATCACGAATGCTATGGCTGACTT 1415940 36 100.0 30 .................................... TCAACACTTGTCACTTCTATCTACTAATAT 1415874 36 100.0 30 .................................... GGAATTAATCACGAATGCTATGGCTGACTT 1415808 36 100.0 30 .................................... CCTGTCGCGCAGACATGATTTAATTGATAT 1415742 36 100.0 30 .................................... CACTAAAATCAACGATGTTTTAAGGCAAGG 1415676 36 100.0 30 .................................... AAGTTTTTAAGTATCCATCTTCGTCGAACA 1415610 36 100.0 30 .................................... TTGATATTTACCTTTTGAGTAGGTATCTTG 1415544 36 100.0 30 .................................... CTAGGTCATACATATAAAGCAAACTATTGT 1415478 36 100.0 30 .................................... TATGGCATATAATCAGAAATACCATTACAC 1415412 36 100.0 30 .................................... GTTGAAGTATTTCGTTGTAACAATGACAAG 1415346 36 100.0 30 .................................... ATGAGGTGAAAATAAAGAGCTTGTGTTTCT 1415280 36 100.0 30 .................................... ACACATGTCTCTTCTTTCAACCAATATCGG 1415214 36 100.0 30 .................................... GTTACATTTATTAATACCAGTCATTGATTT 1415148 36 100.0 30 .................................... TGACTCTTTCTTTCTTATCTTGATACTAGT 1415082 36 100.0 30 .................................... TGCTCTAAAATCGTTCTACGAGCGTTTTAT 1415016 36 100.0 30 .................................... GGCTAGGAAGTACAAGTAACTATAAGAAAT 1414950 36 100.0 30 .................................... AGCCTTTAGCCATAGTTTTTACATGACCGA 1414884 36 100.0 30 .................................... CTGAAGCAGTAGAGAACTCTACTTGGAACT 1414818 36 100.0 30 .................................... CATTTGATGGGAATTTAAGTCAGCTTGGTT 1414752 36 100.0 30 .................................... TTGAGAGTAGATGACACGATTCAATTCTAT 1414686 36 100.0 30 .................................... CCTTAATGCCAATGGTATTTTGAAGATTAA 1414620 36 100.0 30 .................................... AATTACAAAAGTCGAGTTGGCTGAAAAAAT 1414554 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTGGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAAATGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATGATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGATAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //