Array 1 11398-12647 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFGP01000143.1 Escherichia coli strain BE854 sequence143, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11398 29 100.0 32 ............................. GCAAAACCCTCGACTGGACAAATACCGGCGCG 11459 29 100.0 32 ............................. GTCTGTTATGCGAATATTTTTATTCTACTTTA 11520 29 100.0 32 ............................. GTTTTTACTCTCTGCCGCTGAGCGTCACACGG 11581 29 100.0 32 ............................. AACGTCAGGTTGTCGCCGCTCTGCGTGGTCGC 11642 29 100.0 32 ............................. TTCCAGCATTTACGCGGGGGTGTGCGAATGAT 11703 29 100.0 32 ............................. CCGGTCGCGCTATTGAGCCGTTCTTTTCACAG 11764 29 100.0 32 ............................. ACCATAAACATTATCCCCCGGCAAATTACCGC 11825 29 100.0 32 ............................. TCGATGCCGAACACGCTAAATATCTCGCAAGT 11886 29 100.0 32 ............................. GTGCGTTGTTGACGGTCTGACCTTCCCGCTCC 11947 29 100.0 33 ............................. GCCTGATTCCCGTATTTGTGAGAGTAATAACGC 12009 29 100.0 32 ............................. CTATTCCCCTGACCGGACATACCCTGGACAAT 12070 29 100.0 32 ............................. GGCGTCAAACTCTTTGTCACTCATACCAAAGA 12131 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 12192 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 12253 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 12314 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 12375 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 12436 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 12497 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 12558 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 12619 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1265-1904 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFGP01000170.1 Escherichia coli strain BE854 sequence170, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1265 29 100.0 33 ............................. GGACCGACCAGTGGCGGCGGGGTAAATAAATGA 1327 29 100.0 32 ............................. TCTTTCTGCTCTATCCCTGAAGAGCGTACGTC 1388 29 100.0 32 ............................. CCGTCAGTAAACCCGCTGGCGGGTACTGGATA 1449 29 100.0 32 ............................. TAAAAATTAGGCTTCCACGCCTCAACGCCAGT 1510 29 100.0 32 ............................. CCCTCCAGGCTATCGCAGCACTGGTCCCGTTT 1571 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 1632 29 96.6 32 .................A........... CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 1693 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 1754 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 1815 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 1876 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //