Array 1 2407-3233 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_POPR01000048.1 Streptococcus suis strain 191 SS_0191_Contig48, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
      2407	    36	 100.0	    30	....................................	AATTTTTGGCTGATGATGTTGCTTGAGAAA	
      2473	    36	 100.0	    30	....................................	TAGAAATGGAAAATTCGCAAAAGAAATATA	
      2539	    36	 100.0	    30	....................................	AAAAGCTTATTCAGCATATCGTGTCAAAGG	
      2605	    36	 100.0	    30	....................................	CTATGGTTTTCTTTTCGTCTATCATCGTAT	
      2671	    36	 100.0	    29	....................................	ATATTCAATTTACTAAATTCAAAAATCCA 	
      2736	    36	 100.0	    30	....................................	AATTATTGTGTATCATTCAAATCAAGCACA	
      2802	    36	 100.0	    30	....................................	GAATTGCTAAAGAACAGCTAGACGTGCTAT	
      2868	    36	 100.0	    30	....................................	TACTTTTTGGGGACATCAGCAAAACACATA	
      2934	    36	 100.0	    30	....................................	TCTTTTAATTGTTTCAAACAGTCACCCCCT	
      3000	    36	 100.0	    30	....................................	CGAAAACGTCGTTCCACATCCAGCTGTCTA	
      3066	    36	 100.0	    30	....................................	AATAAAGCGAAACAAAAAACGAAGATAAAA	
      3132	    36	 100.0	    30	....................................	CTTCTGGTAGTTATCCCCATAACATTTGTA	
      3198	    35	  83.3	     0	.......................T..T.-....TCA	|                             	T [3220]
==========	======	======	======	====================================	==============================	==================
        13	    36	  98.7	    30	GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC	                              	       

# Left flank :   AAAATTTAGATGATTACCTAACTTACGATTCTTTTGTGAGAATAGCACAGTATTTAGAGGAACTTAGTAATAAGTATCCCTATTTCAACACAATCTTGTTTCCTTCTCAAGAGGGCTATTTGTACTTGACCGAGGCAACGCTTGAGACTGTTAATATTGTGTCTGATAGAATTGAACACTACCCTGCTTTCACGTTTCTCTATACTCGTTATCAGCAGTCATATCCCTCAACTAGCCCACTAGGTGAAAAAGAATTTTTAAACTCTTTGAGAAAAATCAGTTCCTATTTATTCTCTTCAGACATTAATAGAGTCGTGAGCTTAGCAGACATAGACCTAGTAACTCTAAAGATAGTTAATTCACTTTATCAGTATGATATTAAGATGGTATATATGTATAAAGGAATATCAAAATTAGAGGAAAATTACCTTTCTTCCTAAATTTGACAAGTTTTTCGATAAATATTATAATTACGGAAGAGAGTACAAAAACCATTTGAG
# Right flank :  ATAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGGGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTTCAAACCCTAGGAGCCTTCAAGTTGCC

# Questionable array : NO	 Score: 6.20
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:72.22%AT]
# 	Reference repeat match prediction:         F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [0.00,-1.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-7] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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