Array 1 49551-49908 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWJE01000198.1 Clostridium botulinum strain CDC 1656 CbotD0042-10163_198, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 49551 30 100.0 34 .............................. TTTTTAACATAGTTACATATTTACGCTTTTTAAA 49615 30 100.0 36 .............................. AATTTTAATTGGCTATCAAATACTTTTTTAGAACTC 49681 30 100.0 36 .............................. GGCATCATTAAATTATAATATTTAATAAATTCTTCT 49747 30 100.0 36 .............................. TTTGTAAACCCTTCTTCCTCTGTTGTTATTATTAAA 49813 30 100.0 36 .............................. CTATTTCTAGCCATTCTCTCTATATCAAATGTATCT 49879 30 96.7 0 ......T....................... | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 99.5 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAATATGTTCTTGGTTAAACCGTAAAGATGAACTTGTAGCAGCAGTAGCTATAGGATATGTAAATCAACCCCCTTATCCACGTCCACGTAAACCGTGGAGAGAAGTTACAGAATGGATGAGTTAATACATTTAACATCAAACAATAAAAACGGAGAATTATTTTAAATACCGTATTATTTATAATTGAGTTCCATAGTGTTTTTACACCGCAATACAATTATATTGCAAAGTTAGATGTATTTAAGTAGTAAATATAAATCTGAGATTTAGTGTGAGGTGCTTACTCATTTGAGGAAGCGAGAAGGCGTTCTACTAACTGAATTTTTCCAGCCAAAATAAATTTTAAAACCTATTTTGAGCGTTGACACATAAGGCTTATGGTAGATTTTTATTTTATATTTGTAAAAAAGCAAAACTACTTGGAAAACTTTCTTTGAAATCTTGTAAAATCAATGGTTATATGCTATTCTTAAAAATCAGGAATGGCTATTTTACTATG # Right flank : TATTATATCTCCTCTTGTAGCGGGAGTTCCTATACCTGTTGAACATTTAAGTTCCTTTTAGGTGCAATTCTTTTTGGGTTATTGACTTGTTAGTCTAAAGCTACACCATAAGAAAGTTCATTAAACACATGTGGAAGAACAAGTAATAGATACAGCACTTGCTATTGATATGGTGAATTGTATTACAAATAACGAAGGTTTTATCTAAAACTGTTCATATGGCTGGATTTAAGAAATATAATAGTGTTCTAAGTTGTATCATAACCTAAGTAAATTATAAGAATATATGGTTATATTTATTTTAAGACTATTGTATTAATATGATTCATCCAGATTTAATTGTGAGAAATTTCATTATAAACTTAATAGGGAAGTCTTAGATTTTTTATTGCATGAGATTATACGTAAAATATTAATTTTCACTATAACTTAACAAATGATTGATACAATTTTAAAAAAATCAGGACTTACAATGATAAAGTAGGTCCTGATTTTTATTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 11838-11215 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWJE01000253.1 Clostridium botulinum strain CDC 1656 CbotD0042-10163_253, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 11837 29 96.6 38 ...............A............. TTGGGTAGTCTGTACCTTCTAGTAAATTCGTTGTCCCG 11770 29 100.0 37 ............................. TCTAATATTAAAACTTTTCCAAAGCCATCTTTGCTTG 11704 29 100.0 38 ............................. GGAAATAAGTCATTCATATTTGATGCCAATATTGTTCG 11637 29 100.0 38 ............................. TCATCTATATAATAATTATTTCCAATTTCTTTTAATAG 11570 29 96.6 37 ...............G............. AAACAACTACTAGAGTTATTAATATACTTACATAATA 11504 29 93.1 37 ........C......A............. ATGTTATAATAAACAATTTTTGTTTCATCAAAATTGG 11438 29 93.1 37 .....T.........A............. TAGAAATTACAAGAATAACAATTAGATAGTATAGGAA 11372 29 96.6 37 ...............G............. ATCCATAATTCAATATATTTCTTTACCCATTTACGTG 11306 29 89.7 31 .......A......GA............. TATAGAACCTTCTCTTTTGTCTAAATCATTG 11246 29 82.8 0 .......A......GG...A........A | G,TA [11217,11220] ========== ====== ====== ====== ============================= ====================================== ================== 10 29 94.9 37 TTGAACATTAACATATGATGTATTTAAAT # Left flank : ATAAAAAATATTCTTGGAAATTTAGATGAAAATATAAAAGAACTCTTTATAAATAATCCATGTATACAAGTCAATAATGAAAGAATTGGAATAGAAGAGATGAAAGAAAAAAATATACCCATAGAATTATTAAAATCATCTGAAAAGGAAATTGACACTACACTTGATGCAGACGCTAATAACAAGTAGTATCTATAAAGGGGGTGAAAATGATATGGTATTACTGAAAATAGAAATTTATATAACTAGATTGCTAGTATATATCTATAAAAATTTAACCTTTTTACCTCTCTTTATAAGAAATAAATTATTAAGATATATTTCAATAAAAACATTTGATATAACTGAAGCAATGCATAAAAGAAATTTGTTATAGATTTTTAAGGTACTTCTATTATGGGAGTACCTTTTATTTTTTTTGCTTACTTTAATTTTAAAACCTTGTAAAATCAATACTTCTATGTTATCCTTAAAAATAAGGAATGGCTATTTTACTATGG # Right flank : TAATAATTGTAGCCTATGTTATAGTTATTATTTTTTATTCCTTAAAGGAATTTTTTAACATTTGTAGAATATTAAATATAATGCTTCCCAATGGGGTAATTATAGACCTCCGTATTTAAAAAAGAACTCCAATAATAAAATGGAGTTCTTTTTGTATGGAACTTTATATATTGGTGTTATGTTTTGGTAGTACCACTTTTGTATTATTTCATTGAAAAATGGTGTAAAATGTATGAATACTTGGGAAAAATTATAAAGGGAAAATTGTATAAATGTAGAAATTATATAATAAGAATCTGTTAATTTAAAATGATTTAACAGATAAAATAATATAAAGGGGGATGACTAAATGAAAAAAATTGTAATTGGTCTTTTAACAGCATTGATACTTGGGGTAAATGTATCTAGTGCTTATGCAGCAGAAAGTTGCCCAAGATGTGGTGCTACGGTTGGGCGAGGAGAAAATCATAAATGTTGCGATTATTTAGGTCATGATTTTA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACATTAACATATGATGTATTTAAAT # Alternate repeat : TTGAACATTAACATAGGATGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 1010-1757 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWJE01000220.1 Clostridium botulinum strain CDC 1656 CbotD0042-10163_220, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1010 30 100.0 35 .............................. TGATATAATGTTGACTAATTCATGATATTATGATA 1075 30 100.0 36 .............................. ATTTTATGGAGGTTATCAAAAGTGAGTTGGGAGGAC 1141 30 100.0 35 .............................. AGGTATAGAAAAAATAAAGAAAACAACAGAGGAAA 1206 30 100.0 36 .............................. TTAAACAGTTTTTTAGCCTCTTTGACTGTGATTGTA 1272 30 100.0 35 .............................. AAAAATTTTAAATATGATGATTCTTCATCTTGTAT 1337 30 100.0 36 .............................. GATATTTCTTTTATAGATTTAGAAAAAACTTTAGCT 1403 30 100.0 34 .............................. AAGTTAAAGTGACACAAAAAACCTGTGATGAGGG 1467 30 100.0 36 .............................. TCCTTAGAAAGTTCACACACATAACTTGTATACCAT 1533 30 96.7 35 A............................. GAAAGAACTAGAGCTAGTATTTTATATGAATTATC 1598 30 96.7 35 A............................. TGATGTGGAAGAACTTTAATCCTTTGGACGAATTC 1663 30 93.3 35 A............................T GAAGAAACTATAAAAACATTAAGCATTATAAAAGC 1728 30 83.3 0 ...............G....AG......GT | ========== ====== ====== ====== ============================== ==================================== ================== 12 30 97.5 35 GTTGAACAATAACATAAGATGTATTTAAAC # Left flank : GATAACTAGTTTAGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAATACCACCCCCTATTTATAAGTGAAAGACTCACCAATATCCTAGGAGGATAAAATATTCAAAACCCCCGTAGCCATCCACTACGGAATTACTATCCTAACTTGGATATTATATCATAATTATCTATACTAAAAACAGAGGAATTAAATGGTAAATAACATTTTAGTTTAGAATACTACGTTTATTTTAGGATAAAAATAACAAATAATTATATAGAATACGCTAATATTTTTCCAACCAACTTTAGCTTACAAACCTATATTAGCTCTTGAAATATAAAGCTTAAGGTAGGCTTTTCTTATATATTTATAAAATATTATAATCGGTTGGAAAATTTTCTTTAAAACCTTGTAAAACCAATGTCTATGTGCTATTCTTAAAAATAAGGAATGGCTATTTTGCTATG # Right flank : TAGAGGAACCAAATTTGTTATTTGACGTAAATTGCTCACTTTTTGGAGAGTATGGGAAGGTGTTTCATTAATTGAATTTTTCCAGGCACAATAAATTTTAAAACCTATTTTAGTTATTGAGATATAAAGCGTAGGATAGGTTTTTACTATGTATTTATGTAAAACCAAAATCGCTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAGTGTTTATATGATATTCTTGAAATTAAGAAATGGCTATTTTACTATGGTTGAACAGTAACATGAGATGTATTTAAATTGGCATAACAATACAAAAAGAAATAAAAGTAAAAGGTTGAACAGTAACATGAGATGTATTTAAATTGTTTCGGAGATTGGCTTCTATAAAACTTATCTACGTTGAACAGTAACATGAGATGTATTTAAATGGGATTTCCTCATTAAAACATCTTCATTTGGAAGGTGTTGAACAGTAACATGAGATGTATTTAAATTTGCCTAGATTATTTAACAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAATAACATAAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 2011-2367 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWJE01000220.1 Clostridium botulinum strain CDC 1656 CbotD0042-10163_220, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2011 30 100.0 35 .............................. TGGCATAACAATACAAAAAGAAATAAAAGTAAAAG 2076 30 100.0 35 .............................. TGTTTCGGAGATTGGCTTCTATAAAACTTATCTAC 2141 30 100.0 36 .............................. GGGATTTCCTCATTAAAACATCTTCATTTGGAAGGT 2207 30 100.0 37 .............................. TTGCCTAGATTATTTAACATTGTGCTTGAAGAAAATT 2274 30 96.7 35 ........A..................... GTGGTAGTAAGTACATTACTCTTTGAGAAAAAATC 2339 29 90.0 0 ........T......A.......-...... | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 97.8 36 GTTGAACAGTAACATGAGATGTATTTAAAT # Left flank : ACACACATAACTTGTATACCATATTGAACAATAACATAAGATGTATTTAAACGAAAGAACTAGAGCTAGTATTTTATATGAATTATCATTGAACAATAACATAAGATGTATTTAAACTGATGTGGAAGAACTTTAATCCTTTGGACGAATTCATTGAACAATAACATAAGATGTATTTAAATGAAGAAACTATAAAAACATTAAGCATTATAAAAGCGTTGAACAATAACATGAGATAGATTTAAGTAGAGGAACCAAATTTGTTATTTGACGTAAATTGCTCACTTTTTGGAGAGTATGGGAAGGTGTTTCATTAATTGAATTTTTCCAGGCACAATAAATTTTAAAACCTATTTTAGTTATTGAGATATAAAGCGTAGGATAGGTTTTTACTATGTATTTATGTAAAACCAAAATCGCTTGGAAAACTTTCTTTAAAACCTTGTAAAATCAGTGTTTATATGATATTCTTGAAATTAAGAAATGGCTATTTTACTATG # Right flank : TTGGGATATGATTTTTACATTAATTAAATAATAATCGTAGTTTATTATAAATAGTATGGAGGTAGATTTTGAAACTTAAAGTAGTATTTTTAATTAGTTTTATTATGTTTATTCTTGGTATATACTTTTCCAATAAGTCTAATTTTATGATTTTAATTGGAATATTAGGTGGAGGAATAATGGGATGTGTATCAGCATTTGTAGGGTATTCTAGAACAAATGCTATTAAAGATAAAGAGGCTAGTTCATAAAAGAATTAATTTTTTATTATCTCATGGATTAAGTATGTGTTAAAGTTTTCAATATTAACATAAGAATTAAAAATTAATATTATATATGATAAAAATTACTAGAAGTCTTAGAAAAATCTAAGGCTTTTATTTTATGCAAAGATTTAGAATGGAATATGATAGGTAATTAATTTATTAATAAAAATAATAATATTTTTAAAATATAAGTAAAATAATTAGTTATATTAACTAAAAGGTGTATGGTATAAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 8255-7965 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWJE01000163.1 Clostridium botulinum strain CDC 1656 CbotD0042-10163_163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 8254 31 100.0 33 ............................... CATAAATAAATCGACCATCATTTATAATTTTCT 8190 31 100.0 35 ............................... TATTACAATATTCAGGTATAACAACTGTAAAATTG 8124 31 100.0 33 ............................... ATTTTAAATATTAAATAAATAGAGGTGATTTTA 8060 31 96.8 34 ..............................G ATGAAACCATAGTAGCTAATCATCCATGGGCCAC 7995 31 90.3 0 ............................GCA | ========== ====== ====== ====== =============================== =================================== ================== 5 31 97.4 34 GTTGAACAGTAACATAAGATGTATTTAAATT # Left flank : T # Right flank : GAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGAGTTTCATTAATTGAATTTTTCTAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTTTTTATCATGTGCTTATGAAAAAACAGAATCACTTGGAAAACTTTTTCTAAAACCTTGTAAAATCAATGGTTGTATGATATTCTTAAAAATAAGGAATAGCTATTTTGCTATGGTTGAACCTTAACATAGGATGTATTTAAATTCATCTGTTATATCTATACCTAGAATTTTTATAAAAGTTGAACCTTAACATAGGATGTATTTAAATTTGTGAATGTATAGGGAAAAATGACCAAATGTTAGTGTTGAACATTAACATAGGATGCATTTAAGCAGAGAACCCAAATCTATGATTTGGTGTGAATCGCTTACTCCTTAGAGAGTGGCATAAGGATTTTTATAAAACTAAACTATGCATTGT # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //