Array 1 3131-3767 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSSS01000022.1 Leptospira sp. ZV016 ZV016_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 3131 37 100.0 34 ..................................... CATGTCGTGCCGTTGTCTGTGGGAAAGGTGAAAG 3202 37 100.0 35 ..................................... AGTCCAGTAACACACTGGTCTTGAATCACGCGAAA 3274 37 100.0 34 ..................................... TTTTCTACTCCTTGCGGGTGTGGGGTTTCTTTGG 3345 37 100.0 36 ..................................... AGGTTGTGATGACGGTAAAGTTTATGAATGCGAAAA 3418 37 100.0 34 ..................................... GAATCTTGAATTGTTTGTGTGATCGCGGATTGTA 3489 37 97.3 35 .......A............................. CCTTCTGTTCGCTACGTGATCGAGATAGAAAAGTC 3561 37 100.0 134 ..................................... TATGTGGGCGGTCTTACGACCACATTTGCCTACTCCATTAGAGTGAAAACGACAAGCTATGTGACATATTTAACTAACTTTAATTTTTTGTTTTTAGTAAATTGAATCTTCTTTGCGATCGTTTTTGATGCGAC 3732 36 70.3 0 C......T..C.A.CG...-..A....A.G......T | ========== ====== ====== ====== ===================================== ====================================================================================================================================== ================== 8 37 95.9 49 GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Left flank : TCGATAAGCATATATTCTGAAATACAATCCATTTAGAACAGAACTTCTATATTTTTAGAATATTCCATTATTTACTTATAATAAGGCCCTACAAATTTTAGAAACAGATTCAGTTTAGACAAAATTCTGTACGCTCTGATTCTATGGTTTCTGAATTAGTTAAGTTTTCAAGTCCAGCGCTTAGACAATCATCTCAACAAGAATGAAAGAACCCTTGAGTTAAATTTCAAAATCGATCTTTTTAGTCACAAACTGAACAATCCGGAATTCAATATTCTTGACTTTAAAACCTGGGTCATTTTATGATGAAACGCTTTTTGCGAACCTATTTCTCCCGATCCTTTGCGACCCTTTCGCGTTTCAATAGACGGTCGCCATTTGTCGATTGAATGGGTTTTGCTCAGCAATTACAGTATGTTACGATTAGGTTCGCAATTATTATGTCTAGAAAAGGTAATAAAGTTTTTTCTAATTCATAAATTGAGACTTTTCTAACCGCT # Right flank : TTAACACGGTCTTACGACCACATTTCTTACTTTGTTCGCAATGGATGGAAATCGGCATTTTAATGCCGATTGACTTACAAGTAATAATTTAACGTGAATTCGTCGTAAGAGATTGTTTGATAAAAACCTGATTTTTCCATAAAAAATCAATGTTTAAAAATTTGTAATGCGACTTGAGACTCAGAAATTCCCAAAAATCAAGTCGGTCTGGATTATTTAACTTTTTGTGGTAAATCCTACATTCTCAGTTTTTTACAAACTAGAATTTGACGTTACGCGAAATGGATCAACGCAGGGAACTTTAGCAGAACGCTCTTTCAAACCAAAGCGTCTCACTTACTGAATGCCGATCTTTAGAGAATCATTCGCTGAGTTTTCTGGATCGTTAGACGGTATCGTGTTCTATAATCAGGTGAATTAGCGCGAAAGGGATCGATGCGGGGTTAATAAATTGCGACTTAAGACGATATGTTGCATTACATTTCCTGCATGCAATTTAT # Questionable array : NO Score: 4.63 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:-1.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 22342-22012 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSSS01000036.1 Leptospira sp. ZV016 ZV016_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ================================== ================== 22341 38 100.0 34 ...................................... TTGCACCTTTTGCGTCTATTGGAGTCGCAATATC 22269 38 97.4 33 .....................................G TACAAAGTTATTACTGGGACTAATAGGGATTCT 22198 38 100.0 33 ...................................... GATCTTTACTTCGTTTCCGATCTTTACTTCGTC 22127 38 100.0 34 ...................................... GTTGGGAACACTGTAAATTGTGCGAGTCCGAATT 22055 38 94.7 0 ..........................A........G.. | AAAC,AA [22020,22027] ========== ====== ====== ====== ====================================== ================================== ================== 5 38 98.4 34 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAACC # Left flank : GATTCCGAAGAAGCACGTAAAAAAAATAGAAGGGTCAATTTTACCATTCTGAAGAAAAGTAAGTAAAACTTTTCTATATTTTAGATATTTAATGTGAGTTGTTGAAAAATTCCATAGTGGCGATTCGTAAAATTGCTTCAATTGTCCATTCCAATCAGATCAAGAATTAATTTTCCAACAACTCTATAATTCAAAATACGAAACACAGTGGTTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTTTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCTACCTATCAAGCCGCT # Right flank : AATCTAGAATAAAGTTGTTGAAAAATGAATTCTTGATCTGTTTCTATTTCATGGAAACGAGCAATTGAAATAGTTTTGTTAAACGCCACTATGGAATTTTTTTCAACAACTATAATTTTGAAAAAGTTGGGATCTGGACTTTGTAGATCGATTCTTTAAATGTAGGAACTACTGCAAAATTTCGTTCGGAAAAGTATGATTTAAAATCGCAAAAAAGATAAAAAGAGACGTAATCTGTAGGAACTACCACAATTTAAAAAATAGAAGTTTATAACTTATCGTATTCAAGTGTGGAACTACTGGTAAATCCACGATTTGTATGAGTTCCCACATTTTTGAGACCAGAAATAGGAAAGGTTTAGTAGCTTCTATCCTCTGGACGCGAAATCGATACGAGGGAACTTTAGCAGAACGTTCTCTCAAATAAAAGACGAGATATTGTATTAGGTTTCTTTTATGAAATTTATTGACTGGAGCCAAAAGCACGGTCCTGCAAAGCC # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 1 2517-2051 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSSS01000032.1 Leptospira sp. ZV016 ZV016_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2516 37 100.0 34 ..................................... ATAGAATAGCGTCTAAGAAAGAAAAAGAAAGAAT 2445 37 100.0 34 ..................................... TTCATCCAACGCTTTCAAGATTCCGAATATTAGA 2374 37 100.0 35 ..................................... CCTGAAAGACCCCAATAATTTTGTCAGCGTATCTT 2302 37 100.0 34 ..................................... ATCGTACGGCCTATCAATGATGATTGCTTTCGGT 2231 37 100.0 34 ..................................... ACATCGCTCTCAGGCATCAAAAAGGCTGCTGCAA 2160 37 97.3 37 ................G.................... CATCGTAACCCCGTTACCGGAGGTTCTTCTTAGAATT 2086 36 81.1 0 ................G.......G..T.-.CA...A | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 96.9 35 ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Left flank : TAGAAAGATTATCACAGTCCAAAGTTAGAATTTTATCTTCTTCGATTTTTCCCCATTGAATCGAATTCTTTTTTTTGAATCGTATATAGTTAGTCGCCATTCAAAATACCTAAACGTATAATAAGAATTTTATAAAAATGCCATATTTGTGATTAATATATTTTTAAAATACAACAATCAGTAAAGAACATATTTAGTTGAACAACATTTTTTATTTGTTTTTATAGAAAACCCTATCTTTGCATAAATTAAGCGGTTTTTAGTTTCAGGATATTCTTGACTTTTAAAGGCCGATCCTTTTATGATATAACACTTTTTGCGAACCTGTTTTTCCCGATTCTTTGCGGCCGGTTCGCGTTTAAACCTTTGGTCTACGTTAGTCGATTTGACGGTTTTACTTAGTATTTGTATGGTATGCTCCGATTCGGTTCGCAATTATTATGTCTAGAAAGCTCAATAGAGCTTTTTCTAATTCATAAACTTGCACCTTTTCGGCCGCT # Right flank : AACGATTTATTTAAAAAAAATTATTTTAGGTTTTAAGGCGACCTCTTTATAAAAGTTTTCCCTTAAAGTAAAATCCTAGATATTCAATTATAAAATTCTAATTCATATAACGTGATTTAAATTCTAGATATTTATTTTATAAAACTGAATTTCTTCGTAAAAAATTGCGAGAGAACGATTTAAGCTCTACTGAAAAAATGTAGGAACTACTACATTTTATAGATTGAATAAACCATTGTTAAACTTTATAACAAAGTACGACTATGAGAGGTAGTTTGTGGGAACTCATACAATCTGATTACTGTGATGTAGGTTTATTCCAAGCAAGGAATTTGGTTCTACTACTGATCTCTATAAAATTGAGTACCGTTAATTTTATCGCAAAACACTGATTCCATGCAAAATATTAGGTATTTTATTGATAGTTATGAGTGATAATTATATAATAGAGTTGTTGAAAAATTAATTCTCCATCTGTTTTCTATTTCATAGAAACGGTC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:0, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCTTTCTCTTATTAAAGAGGAAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 2 67302-67526 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSSS01000032.1 Leptospira sp. ZV016 ZV016_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================= ================== 67302 24 100.0 49 ........................ AGTGGATTGAAACTTTAAAAAAATGCTTCTCGCTACCGCTCGGGATTTA 67375 24 100.0 48 ........................ AGTGGATTGAAACGCATTGTAATCGTGCCATCTCCCTGCTCACCCTGT 67447 24 100.0 33 ........................ CTATTTTATGTGGGATCGATTCCTAAGACATGC 67504 23 75.0 0 ........T...A...G.-C.T.. | ========== ====== ====== ====== ======================== ================================================= ================== 4 24 93.8 44 GTTTCTTCCTTTGTTTAAGAAGGA # Left flank : TATTCAGAACCATACAATCAATTTCCCAGCATTTTATTTTTAAACAGGGTTTTGCAGTAAAACTTACAGCTCTCCATTTTTTAGAACTAAAGCAAAATGCTCTTTATTGGATTGGGTTCTTTTATGTAGTCATAAAGTAAGAGAAAAATTCCATACTCTATAAAATGAGTTATTGAGACCGAATTTTTACTAAACGTTTAAATCAATCTTCTGAAAATTCATTCCTAGATATCCATCTACTTAGACTTAAAACTAAAGAATTTATAGTTTATATTCTTGACTTTAAAAAGCGGACCATTTTATGATGAAGCGCTTTTTGCGAACCTGTTTCTCCCGATCAATTGCGGCCCATTCGCACTCAAACGAATAGCCACCGCTTAGCGGTGGAACAGTTTTGCTTAACATTTATACAGTATGGCGTCAATAGGTTCGCGATAATTATGTCTAGAAAAACTAATAAATCTTTTCCTAATACATCAATTAGAGCCTTTGCAGCCGCT # Right flank : AGTTCGATTTAGAACTTTCTGAATTTATCTATAAAAATCACAGGTTGTATAAATTCCGATATTCAGCTTTTTATGATAAATTTCAGGTTTATAAAATGAATTGATTCAATCCAAGTTCTTTAAAACTACAGCAAATCTTTATTTAAGGAAAGGATACAAAAGACCGAAAACGGCAAAATCTCTAGACTTTCTTCTTCTTGGAAAACAATTGTTAATTAATATTTTAGAGAATTACAATATACTTGATTAGAATTTTTAGAAATTTTTATTTTACCGCTCTATACTCAAAACATACCACAACTCAATTTTCTCCAGTTAACTTACAGGTGTCTCAAAACCAAATCGCACTTTATCAGAAAGATCAAGCTGGATAACGAAAGTGCCTCACTTCTATTGGCGCTCGACAGATTCTTATTATATTAAATCACGTTATCGCAAGGTTTTATTCTTTACCTTGAAAAAAGAATTTAAAATAAACGAACATGAAATTTTTTATCAGT # Questionable array : NO Score: 2.50 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.04, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTTAAGAAGGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 23604-24070 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSSS01000057.1 Leptospira sp. ZV016 ZV016_44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 23604 37 97.3 35 ...................T................. AATCGCAATCTTTTGAATATCTGAAAAAACAGCTA 23676 37 100.0 35 ..................................... TGTTACAATCCATGAATACTGTCTTACCCTTTGAT 23748 37 100.0 35 ..................................... ATTTAACCTGGGCCCCTTCTTACACTGGTGGAAAT 23820 37 100.0 34 ..................................... AAAATTATTTCTGTCATTAAGATTATAATAAACC 23891 37 100.0 35 ..................................... CCACTGCAATCTAATTTGTTTCCAGACGTCGTATC 23963 37 100.0 34 ..................................... GCTAAGCATATTGCTGTGTGTCTTGCTTTTTGTT 24034 37 75.7 0 A.........................AAAGAAC..G. | ========== ====== ====== ====== ===================================== =================================== ================== 7 37 96.1 35 GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Left flank : AAGGATCGATGCGATAGGAACTTTAGCAAAACACTCTTTCAAACTAAAACGTCTCACTGTTCGACAGGCTCATATACTACATTGGATTATACAGAACTCTCCTAACCGACGCTTTATAACAACATTTACCGAGGTTCAATTTTATGGGATGAGTAAAACATATATTCTAGCAACAAACATAATTCAAAATTAAAAATACGAAACACAGTAATTTTCATAATTACGTCTCTTTAGATAGTTATAAATTTCTAATTCTATTCTTTCTTTAACTATATTATAGATTTTTAAAAGCCGATCATTTATAATGAAAACGCTTCTGCGAACCTGTTTCTCCCGATCAATCACGAACCTTTCGCACCCTTGTATTGATTCTCTGTTTGGCGATTGAACGGTTTCGCTTAGCATTTGTTCAGCATGGCAAAAGTAGGTTCGCAATTATTATGTCTATAAAAGCCAATAAAGCTTTTATAATATATAATTTTTCGACCTATCAAGCCGCT # Right flank : CCAAAGCCAATCCAGATTGTATTCAATTCCGACAGAACCCAATTTATTTCAGTTTGAATTCTCTATGACAAAATAGCGCCCCTTCTGAACTTGAAAAGAGCGAGTTCGGCCGAGAAAAAATTCTCTAAAAGTATGATATCAGAATTTGTTCGTAAAACCGCGATTCGTGGTAGTTCCCACATTTTAGGAATCGATCTGTAAAGTTCAGATGTCAACTTTTTTCAGAAAAATGAATCATGTTCAAAGTACGTTAGTTTAAAATCAATTTTAAGGTAGATCCCCACTTTGCAACATGAACAAAAAAGTAACTACTCAGACACATGAAAATAATACGATTCTAATATTTCTTTCAAAACTTAAAATGTGGGAACTAACACAAAACAAGCATAAATTACGGAACAACACAAATTATAAGAGCTTTTACACTTTCGCAAATAATACACTGCTCATTTTTGATGCCATTTTCATAATAATTTAACATGGGTTTGGCGTAAAAGATT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTTCTCTTCTTTAAAAGGAGAGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 1833-1229 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSSS01000061.1 Leptospira sp. ZV016 ZV016_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1832 37 100.0 32 ..................................... AAAATATCCTTCGTTTTCGGAATCTTCAGTTT 1763 37 100.0 32 ..................................... AAAATATCCTTCGTTTTCGGAATCTTCAGTTT 1694 37 100.0 34 ..................................... CTTATCAAGCAGTCCCTCTTCGACCAGCATAAAA 1623 37 100.0 35 ..................................... TCTGGCTTGATCGGCATTTTGCGTCCTCGAATTAT 1551 37 100.0 35 ..................................... GGAAGATAAAGCACTTGAGCGCTTTGATTCGATTG 1479 37 100.0 34 ..................................... CTGCTCCGGTGCGCGTAACCGTAAGGGCCGTGTT 1408 37 100.0 35 ..................................... TATCGAATCGGCCTATAGGAGTTCCGTAGGAGACC 1336 37 97.3 33 ..........................T.......... CTCACGTTTACGGATTTAGAATCAGATTGGGAA 1266 36 75.7 0 ..........A..G...G..G....CT...A.-...G | TC [1239] ========== ====== ====== ====== ===================================== =================================== ================== 9 37 97.0 34 GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Left flank : TTATAGAGAATTTTATTAGGTTGTTTCAAAACTAAAAACTTCGCGAATGTTTACCGACGAGTCAGTCTATTTTACTGAGTTTAAATTCAATTGTTTTTGAATTGATCCTTTCAAAATCTCTAAAATTCGTAAGACCTAAAAAACATTTTTTTAAAATTTTGATTTGAGATAATTTCTAAAGAATTCTTCCGTTTCTTTTCCGAAAATTTCAGTTAGGTGAACATTGACTCATTTATAGTTTTAAATCTATTTTTCCTGGAATCCTATTATAAGTTTTTGCCTTTGATTAGCCGATCTTTTACAATGAATTGTTCTTTGCGAACCTGTTTTTCCCGATCAATTGTGGATCTTTCGCGCTCTTGTATAGATTCGTTGTTTGGCGATGGAATAGATTAGCTTAACAATTGTACAGTATGGTAAAAATAGGTTCGCGATTATTATGTCTAGAAAGCTTAATAAAGTATTTTATAATACATTATTTTCAGTCCTATCAAGCCGCT # Right flank : TGTCTAAAATTTTGTTCCTGAAACGGAGATACTTTTCAAAAGTTATGATACTCTAATATATGAGAAATGACTAATCGATAGGAATTGATTGCTCGGAACAATAATTTCTAAGTTTTGTGAGAGCTCCCACAATTTTAAAAAATTGGAATGTTTTGTATATCAAACACTACAGGTTTTTATTTAACATAAATTCGAAATAATAGAAATTAGGAAAAATCTATTCTAAAAATAGGAGTTCCTTTTTATTTTTACGGACCAAAGTTTCTCTTTCGGAGAATATCTGGTTTGGTAAATTCTACCATGAAAATTGAGTATTCGTGGTGGTAGTTCCCACAAATTAAGTCTTTTTGTGAATGTATAGGTTTTAAATGCATTTTAACGTGAGTTCGACGTCATAAAATCGGGGTGAATCCTGAGTCGTAGACCGCGCTTTCCGCTATAGTTAATAAATTGTATAAAAAAACATAATATGATATTTCGTCTTAAGTTACAATTGATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTCTTCTTTAAGAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 78550-79377 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSSS01000085.1 Leptospira sp. ZV016 ZV016_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 78550 37 100.0 33 ..................................... CCTTGCTTGATGATCTGCAATCGTATTCTCTTT 78620 37 100.0 35 ..................................... TCATAAGCATGTCGATAATGAGAACTGTGATAACT 78692 37 100.0 34 ..................................... TAACAAAGAAGGTTGGATGAGTATTGTTAATAAG 78763 37 100.0 34 ..................................... AACTGTTCTTCTCGCACTTTTTACCTCTTTTTAA 78834 37 100.0 35 ..................................... TAATTGTTTCACTTTCTTCCCTTATTTAAATAATC 78906 37 100.0 36 ..................................... GAGTGCCTCGTAGGTATAGAGTGCTTCATTTAACGG 78979 37 100.0 34 ..................................... TTGACTAATAAGAATTTTGACGATTTCTTAAATT 79050 37 97.3 37 ..........................A.......... TAACCCTTCTCCAGTAATGCAGTATTCAGATTCTCCT 79124 37 100.0 34 ..................................... AGCCATGTGTCCGACGATTGCGTTTGGAATCCCG 79195 37 100.0 34 ..................................... AAAAACGAATCGTTTCGATTGCGGAAGAAAACAA 79266 37 100.0 38 ..................................... TCTGGGAACCCTGGACGCGTGATCGTACCCGGAAGTAT 79341 37 94.6 0 ........................G.A.......... | ========== ====== ====== ====== ===================================== ====================================== ================== 12 37 99.3 35 GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Left flank : TGAGTTCGGCTGAGTAAATATTTTTATAAAAGTATGAGTTCCTACAATTTTAAAAATTGTTTGTAATATCTTGATTTGTGAGAGTTCCCACATCACTTTACTGACAAACCTAAATTTTGTAATAGTTCCCACATTTAAGGAATCGATCTGTAAAGTTCAAATTCCAACTTTTTAGAATCATAAGTTCCTTACGCCAAACTCACGTTATATTACAATGATTCAAAACCAAATATTACGTCTCTTTAGATATTTAAGAATAGTTTATTTTTGTTATATTATTGACCTTTAAAATCCGATTATTCTATAATAAAACGCTTTTGCGAACCCGTTTCTCCCGATTTTACACGGGACTTTCGCACCAAACGTATACACGTCGTTTGGCGATTGAATGGTTTTGCTTAACGTTTATTCAGTATGGCACATACAGATTCGCAATTATTATGTCTAGAAAATGCTATTAACCTTTTTCTTATACATCTTTGCGGGGCTTTTGAGCCGCT # Right flank : CTAAATGCGTCAGCACTGACGCATTTAGTTGGTCTGCTTCTTCCTTTATTTACAAAGAAAGAAACAAAAAAGAAATATGATTCATTCCTTTAACGTGAATTCGATGTAATCAATGTAAAAACAATTGAGGCGAGAACTCAGTGTTTCATAGACAGGTCTTTGTTTAGATCACGCTCTAAACTCAAACCCTCAGGAATATTTTTTATATCCGATTTGTAAAAACAGTTTAATTTTTTAATTGTCAATTACTTGTGAGATTGAACATTCTAAATTTCAAATGAAAGTATGGCATTTCCCACAAATCATTGAGATTCACTACTTTTTCGCCGCTATAAATTTTTGTATGAGTGCTACATTCCATTTTTGTAAAAAACGAACCTTTATAAAATTACAAATTCTAGTTACGCACATTCCACATAACGACCTTTTATCTCTAAGTTAAGTATCATTTCAAATGACTTTCAATTTAAACATAAAATATTATTTTTCCTCCATCGGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTTCCTTTGTTCGCAAAGGAAGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.40,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //