Array 1 3032662-3031913 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009706.1 Hafnia alvei FB1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3032661 28 100.0 32 ............................ GACAGACAGATCATTAAGTGCGGTAACTTCAC 3032601 28 100.0 32 ............................ AGCGCCAATGCGGTAGCTTGCTGAGACTGGCT 3032541 28 100.0 32 ............................ GCATGGGTATTTGGATTCAGGGGCGTTTCTGA 3032481 28 100.0 32 ............................ CTTCGGGGATTCCGTTCATTTCTAGCAATGGC 3032421 28 100.0 32 ............................ ACTGTGACTTCTTTACGCCTAGTGGGAAGAGA 3032361 28 100.0 32 ............................ TCAACCTCCATCACTTAGCATTGGTTAAGTAG 3032301 28 100.0 32 ............................ GGTTGGAATCGGATCATGGCATGCCACATATG 3032241 28 100.0 32 ............................ AAATCAAATTGCGTAGGGTTGTCGCAGCATCT 3032181 28 100.0 32 ............................ ATACGAACAAACCGTATGAGCTCGGGTCTTTG 3032121 28 100.0 32 ............................ GAGGGGGCTTGACCGCGCAAAAAGTCGCTAAT 3032061 28 100.0 32 ............................ ATCAGGACCTTGTGTTTTGCAGCAAGGCTTTT 3032001 28 100.0 32 ............................ ATCAGGTACCACCGGTTCCATGCTATTACCCC 3031941 28 92.9 0 .....................A..A... | T [3031921] ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCTTGGGTGCCGTAGTGGGAACGCTACTGGCGCTTGCTTCTGCACGAAGCGAATGGCCGATGGTAAGCTCCATGTTCCTGTGTATCTTTGCTGCCATGATGCTGTTCCTGTATGCCTCTAGACCTGCTAAGGCCAGCAACCGTATCGATCCTGCCTAAGCGCTTTGGCTCCCCGCAGATAAAAATAGGCGGGGAGGCCATTAGCAATCGCCGCTCTTTATTTGGCATATGCAACAGACATATGTTTGCCTGTTCGCAGAGCGCTAGCAATGCAGGGCTCAGATGAGCTGAAAGCGTTAATCTGCCCCCATCTTTCCTGTGTGATCCGAACGCCACTCTCTAGCGATTCCCCTAAATACGATAAGCTTCCACTAACCTTTTTTTGCCTATTTATAACCATTTGATTTTATGTGAAATTTTATCACGAAGATAAAAAAGGGTAATGCAGTGAAAAATGAGTTACAGATCTGATTATTCGAAGCTTTATACGAATATTCTACA # Right flank : CAAAACGGCATTTCTGCATACTTTTCTATTAATACCCATCATCGTAAACGTCTGTCATACAAATAAAAGCAAACGCTTTCCTAAATTATAAATCCCCATGAAAACATAACCATGCTAACTATATTTTCTGTGCCATTTTGTGGTGGGCTTTTCATTTCGTTAACAGTATTTTTTACCAAAACAGATAGAAACCCTTAAAAACAAAGAAAACATTAAAACTATTAATTATTAACCTATCAATTAATATTGTTTTAAAACAAATGATTAGCTAATTTCTTTGATCGAGATTCAGGGAGTTATTGTATTTCTTATGTAAATTGAAAAATACGACAAAGTAATTAAAATGAAACAAAAATGGTTGTGGTAATAAAGAGAAAAGTATACATATAACCGCAGCAGCAGAAGTTCCTCCCATCGTGGTATTTGTGTAGAAAAAATGGGGTAGTGCCAGATTGATCGTTGTTTCTGTCGTTTTTACTTCGGTGTTACCGAAATGTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3106339-3105712 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009706.1 Hafnia alvei FB1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3106338 28 100.0 32 ............................ ACAAACGGCTGGCCTTTAGCTTGGCGTATCGC 3106278 28 100.0 32 ............................ GCTGACTAAAGGCAACGGTAAAAATCCATATA 3106218 28 100.0 32 ............................ CACGTCTGTGAGTGCGATGTAGGGCATTCTAG 3106158 28 100.0 32 ............................ AAACTTCAATCCAGCAGAAGCCACAAAAAAGC 3106098 28 100.0 32 ............................ GAATCTGACCCGCTGCCGCGCGTGACTTCATG 3106038 28 100.0 32 ............................ TTTTACGAACCGTTTCTACAACTGCTGAAGTC 3105978 28 100.0 32 ............................ ATCGAAGCATGGTGCGGTCGGGTATGGACGTT 3105918 28 100.0 32 ............................ AGCAACGAGATCGTTTTTCGCGATTTCAAGCT 3105858 28 100.0 32 ............................ GTATCCATGCCAATCTAGAGGATGTGTGAGTG 3105798 28 100.0 31 ............................ GTGTTGCGCACACGCTGTGCCAGTTCGCGAA 3105739 28 78.6 0 ...C.................CA.A.TT | ========== ====== ====== ====== ============================ ================================ ================== 11 28 98.1 32 GTTAACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCAGAAAAAGTGGCCTACCGAACGGTTAGTCGCGTGCAGGTAAAAAGCAGCGCGGAGAGGCTACGGCGCAGATCGGTGAAAAAAGGTTGGCTCACCGAAGAACAGGCTCGTCTGCAAATTCTCGATGCCAATGAACAGAGAACCTCGTTACCTTTTATCGTGCTTAAAAGTTTGTCTACTGAGCAAATGTTCCATCTGTTTATTCGTCTGGGCGAACTGCAAACGCAGCCAACGACGGGAAAATTTAGCAGCTATGGATTAAGCGCAACGGCAACGATACCGTGGTTTTAGTTTGTCATCCGCGTTGATATCCCCGTGCTCATCAACGGCGGGGATATGTTTTATCTAACGATCGAACAAATCTAACGAACCCTTTTTTTGAAGGTATATCTAAGTTGTTGATTTTGAATACCAGCAACTAATGCGCAGAAAAAAGGGTCAAACCCACTCAAAGTGAATTAATGGTTTGATAGGAAAAGGTTTTTGGCTGATTTTCAACA # Right flank : ATCATCTGCCCCATTTTCACTATACTTATTTCAGCGCTGCACCTTTGTTGCAGTATTTGAGTTAACTTTTGCTGAGGTAAGGGGCTAATTTGATTTGGTTTGAGCAAGGTCTTTATTTGCGGGTTGAGGAGTTGGAGAATGGGCCACGGCCTTTGCCGCTGCGTAGCGGGTTTAGTCGTGAAATAGCCTATCGGGCGCTAGGCGTGTTTAATCCCTCTGAATCATCGGATGCTTACTACATATTATCTAACGATCGTGATGAAATATGGTTTATCTGCAATCGACACCTACGGACGGTTGCGCTTTTACCTGACACTACCGATTTCAGGCGTCCTATTGTCTATTGAGTATGGGCGCGAGTGTTCCAACTGCTGTATTTGAATGAAAAACCATCGCCCTAGACGCCATCCTATTCCCGACGTATAAATATTCTCAGGCGTATAACGAATTAACCAACGTGTGAGGAGTTATTTGATGACAGCATTAGCCGTGGTTTTTCA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3115576-3114888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009706.1 Hafnia alvei FB1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3115575 28 100.0 32 ............................ GTCCAGTCGGCAATCTGTTGCAACAGCACCGG 3115515 28 100.0 32 ............................ AAGAACTAGGCCGGCAGGCGGTCGCATCAATG 3115455 28 100.0 32 ............................ GCCAGCAATAGCAACTGATAACAGCGCAATAA 3115395 28 100.0 32 ............................ TACTGACATTTAAGCGGGGTATAAGTCGCCAT 3115335 28 100.0 32 ............................ GTTGCACATCCTGTAAGCGCAGCGGCAAGCAA 3115275 28 100.0 32 ............................ TAGAAAAAACTTATCACTCACTGATAGTTGAA 3115215 28 100.0 32 ............................ AATCATTCTCTCACCACGCCACGACGCGCGAT 3115155 28 100.0 32 ............................ ACTCAAATCTCCCCCAGCTTGCAGCATCAAAC 3115095 28 100.0 32 ............................ TGGTACGGGCTTAACAACTTGGAATGAAGTGG 3115035 28 100.0 32 ............................ ACATTATGAAAAGCTGGGTTTTGTGCGCTCAG 3114975 28 100.0 32 ............................ CAAGGGCGCGAAAACGTTATCGAGTTAACCGC 3114915 28 92.9 0 .....................C..C... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTGACTTTCACTGGCAAAGTGCGCAACCACAATCTTGGTGATAACGTTAGCGCGTTAACCTTAGAGCACTATCCTGGGATGACGGAAAAAGCGTTAAATGAAATTGTGGCAGAAGCCCGCTCGCGCTGGCCTCTACAGCGTATTTCGCTGATCCACCGCATTGGCGCCATGTATCCCGGAGATGAAATTGTATTCGTTGGAGTGACCAGCGCACATCGCAGCATGGCCTTTGATGCCGCCGAGTTCATTATGGACTACCTCAAAACCCGCGCGCCGTTCTGGAAACGAGAAGCCACCGAGCAGGGCGACCGCTGGGTCGACGCCCGCGACAGTGACCAACAAGCGGCAAAACGCTGGTAAGTTCTTTCAACCCTTTTTTCTGCCCTCACGATAACTCATTGATTTTTCACTCCTCCAATGAACCGTAAGAAAAAAGGGTTAAATTCCCCAAAATGAGCTACCGATCTGATTAATCGACGCTTTCTGCGAATATCCTACA # Right flank : CTCACCATGGTTTGTGTTTAATTTTATTCGCTATGTATCAACCTTAAGCCGTTAAGCTGGTTATATTCCAAAATTAAGAATTACTGCATCGCTAAGTGTGATTTAAGTTAAATTTCCCTAATGTGTTGGGTGGTATTTTTGCATTGTCTCCAACGATGGAATAACGATGTGAACAGCAATGATTTCTCTCCCTCTGATCTGAAAACTATTCTGCATTCAAAACGCTCAAATATTTATTACCTCCAATATTGCCGAGTATTAGTTAACGGCGGTCGAGTGGAATATGTGACGGATGAAGGGCGCGAATCACTGTATTGGAATATTCCCATCGCGAATACCACCGTGGTTATGTTGGGCACCGGAACCTCGGTCACTCAGGCCGCAATGCGAGAGTTTGCCCGTGCAGGCGTATTGGTTGGTTTTTGCGGCGGAGGGGGAACCCCCTTATTTGCGGCGAATGAGGTTGAGGTAGATGTCTCGTGGTTAGCTCCGCAAAGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //