Array 1 8582-7959 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZN010000078.1 Clostridium botulinum C/D strain IZSVe-TV_4863_2_13 NODE_78_length_8729_cov_24.0105_ID_12960, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 8581 29 100.0 37 ............................. GTTTAAATTTAATAAAAATTCTGGTTGTGTAAAGGTA 8515 29 100.0 36 ............................. TAAAACAGTTGGAATGACAATCGTTACTTCCGCTAT 8450 29 100.0 36 ............................. GCTCAGGGTCAACTCAGCAAGTTGCTAGAAGGTGCA 8385 29 100.0 36 ............................. AATTACTTTTAATAATAACGGTGATATAAAAGACAG 8320 29 100.0 40 ............................. CTAACCATTCTGGTCCCAAATCTAACATTGATTTAGATAC 8251 29 100.0 37 ............................. CAAAATTATTATCACCTATTTCTATAACACCTTCTGA 8185 29 100.0 38 ............................. TTTATTACCACTTAATGCTATTCTTACTTTATCTCCAA 8118 29 100.0 37 ............................. TGAACTTGAATAAGTAAGAATGTACTAGATGCTACAA 8052 29 100.0 36 ............................. CTTATTAGTTGTTTTAAATGCTTTAACGTGTACCAC 7987 29 96.6 0 T............................ | ========== ====== ====== ====== ============================= ======================================== ================== 10 29 99.7 37 CTTTATAACTAACATAGTTCTATTAATAC # Left flank : CAAAATCAGGTACTTCAAAATTTCTCATTTAGATTCCTCCTAAATTCTTATAAGTATATTATTCCAAACTAACCAATTTTCCATACAAAAAAGATGTAGGTTAATTTGTTTTTACACAAATCAACCTACATCCCCAAGTTTTATACA # Right flank : CCCATTTTCCTTCTATTATCTTCATAATACTATATAACTTCATATCCTTTATAACCTTTTTAACATAAAATCACTAAATTTTGCAGTGAGCCATTTTTTATAGTAAATCTATACAAACGTTGATATAAGTAGTTTACAAGCTTGTTTTAATTATTTAGCAAAAACACTACTAGAGGTTCACTGCAAAATCAATACATTATAGTTACATAGTTTCTTTTAAATATTCTAAATATCCATCAAAAGCATTCTTTACACTACCTATTACAACATCATCACAATCCTTAAATGCTTCTTCAAGATCCTCTTTCACATTTTCAAAGTTTTTATTTAAAATTCTATTACTAACGCCTATCCAAATCTTACTATTTCTAAAATTATCATATTCCTCAATTACTTCCTCAAGACCTTTTATATTTACTCCATCTTTATTTATCAATCCTTGAAATACATTATTTCCCCATTTGTATTCACCCAATATAACAACTTTAGGCATAGTATCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTATAACTAACATAGTTCTATTAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 109-470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZN010000050.1 Clostridium botulinum C/D strain IZSVe-TV_4863_2_13 NODE_50_length_21709_cov_30.0359_ID_12904, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 109 29 100.0 39 ............................. CTTACTTATCTTCTAATTCTATAATTCCCATTAATGCAT 177 29 100.0 38 ............................. TGACATTGCTCCTATCTGGATAATATTATTCTATATAT 244 29 100.0 38 ............................. CACGGACACAATAATTCTACATCTATATAATATATTTC 311 29 100.0 36 ............................. TATTGGGAAATGGCTAATTCGCTATTTCCCATGAAA 376 29 100.0 37 ............................. TATCTAGATTGTGTAGGAGTTCGTACTCTTGGATATG 442 29 89.7 0 .........................T.GT | ========== ====== ====== ====== ============================= ======================================= ================== 6 29 98.3 38 GTATTAATAGAACTATGTTAGTTATAAAG # Left flank : AAATATTACTAGAAAGGTGAATTTCCAGTAATATTTTCTGATACTAATTAGAAGTACACAAATCTATCTATATTCTCTAAAACTTTAATATTTAACATTTTAATTTCCG # Right flank : TAATCGGTGACAGGGTGGTGTACATATGAGAATTATAACTTGGAATTGTAATGGTGCTTTTAGAAGAAAATCAGCACCAGACACTTGTCAAAATATTGTTCTTCGTTTCGCCATATTTCGGGCGGTGCCTGGCACCGAGAAGATATAATATAATTAGATCATGTTGATATTATTATAGAATTAGATAGGAGAGTTTATGATATGAATTATGAAAATAGTGAGCAAATTGAACAAATACCTGTTTTAATCCAGAAATTATATTCAATAGTAAATGAACTAGAAACATCTTTTAAAGGTAGAAAATTTACTCTTGATGGACATTTAGTTGGAAGCATAGGGGAGGTATTGGTGTCTTATTATTATGATTTAGAATTATTGCCTAATTCAACAAAAACACATGATGCTAAGACAAAGGATAATAAATTAGTTCAAATAAAAGCCACTCAAGGCAAATCTATAGGAATTAGTAGCAAACCTAATTATCTTATTGTTATTAAAAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 3422-5295 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZN010000050.1 Clostridium botulinum C/D strain IZSVe-TV_4863_2_13 NODE_50_length_21709_cov_30.0359_ID_12904, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 3422 29 100.0 38 ............................. ATACTTCTCTGTAAATCTCCATTTACAAGTGCTATAGA 3489 29 100.0 38 ............................. AATTTAACTGCATTTTCTAAAATGCTTATTCCTTCTAT 3556 29 100.0 36 ............................. TTAGGTACTTGAAGTTTATATATTTTTATTTTTTTC 3621 29 100.0 38 ............................. CTTCAGATTTTCCATCTATGCATATACTAACGTGCTTG 3688 29 100.0 36 ............................. TTTCCATATTGCTTAGATAAATAAACTCTTTCATCT 3753 29 100.0 35 ............................. TGTTGGCAGCTGCTAATTTATACTCACGTCTGAAT 3817 29 100.0 37 ............................. TTAAAAAGAGTATTAAATTCATCTTCAAAATAAAACC 3883 29 100.0 36 ............................. TATATGAGAAAACTTGTAAGTGGTGAATATATGTTG 3948 29 100.0 38 ............................. CTTAAATTACCATGCTCAATCAAACTCATGGTTGCTTG 4015 29 100.0 36 ............................. TTTCAGCAATCTTCTAAAATTAAGCAATCTTTTAAC 4080 29 100.0 36 ............................. ACATTGTTTTAATTTTGTGTCACTCTATTATAATCT 4145 29 100.0 40 ............................. CCAATTGAGCGAATATCACTCTTAGGATAGTTCAGTATTG 4214 29 100.0 37 ............................. GGTCAAGGAAAGACTTATAACATGACACGTCTTGCAC 4280 29 100.0 36 ............................. TGAAATAATCTTTAGCCATACCAGCTATCATCTTGC 4345 29 100.0 36 ............................. AACTAATCGATTGATACGGATGTGTTATTTTTTTGT 4410 29 100.0 37 ............................. TATGGAACTAAATCGGAAGGTAGTCAAAAATATATAG 4476 29 100.0 37 ............................. GCCTACGAAAGTAAAAAAGATGAAGCAAAAGAAATTA 4542 29 100.0 37 ............................. CCAGAGACTATTGACTTTATTTGTTCCAAGTAATCTG 4608 29 100.0 37 ............................. AAAGATAGAGTATTCAGACCAATACCACTTCCTTGAA 4674 29 100.0 37 ............................. GTTGAAATAGCATTTGGATTTGTAGCAGCTAAATCAC 4740 29 100.0 36 ............................. TATTTAACAGAGGAAGAACAACATTTTTTAAACTAT 4805 29 100.0 37 ............................. TCTTTTAAATCTAATTTTCTATCTACTACTATAATCC 4871 29 100.0 38 ............................. TAAATTTAAATGTTTAACTAAAAAATTATTCAATGCGG 4938 29 100.0 37 ............................. GCAACACTAGCTAATAATAAAGACTTTAAAACTGCAT 5004 29 100.0 36 ............................. GAAAAAAATACAAACTTATAGGTGATAAGCTTCAAA 5069 29 100.0 37 ............................. GGTATAGAAACTGTTTTAAAGATCAAAAAAGCCCTCA 5135 29 100.0 38 ............................. GACTATTGAAATAACTTAGAGGCTCTGTATCAAGCTGA 5202 29 100.0 36 ............................. CCAGAAATGAAATTGTTACATTTATCAATTAAAGAA 5267 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ======================================== ================== 29 29 99.9 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : ATCAATATAAGAAACAAATAAATGATATAATTAACAATATTAGAGTTGGATATTACAATGAAAATGCTTGTGAGGAAATGTTGAGTAATGATAACTCTGTTCAAATGATACCTGTTAGTTTGCTAAGTGAATATATTAAATCGAGAGAAGAAAAACGATATATAGAAGGTAATGAGTTGTTTGTGAATTCAAAAAAATATTTATCAGAATATAATAAAAATCTTAGAATTTATATAACAGATCGTGTTTATGATATTAGAGGACTAGTTGAAAAAGAAATAGATATAGATAATCAAATGGTTTAATAATTTTATTTGCAGTGAACCTTCAGTAGTGTTTTTTGTATTTTTTGAAAAAGTGCTTTAAGTATATATATATCAACGATTGTAAAGAGTTATTGCAAAAAATAGCTCACTGCAAAATTGTATGATTTCTTTTCAAATTTTAAGTGTAAAATATGGAGTTGTATAGTAAAACAAAGATATTAAAAGAAAAATGGG # Right flank : TCATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATAATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAGTTTGTTTATTTTTTCCATATTAATTTTAATAGATTTTATGATTATAGGGAGTGATATTCCAGTTAACATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 6407-6962 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZN010000050.1 Clostridium botulinum C/D strain IZSVe-TV_4863_2_13 NODE_50_length_21709_cov_30.0359_ID_12904, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 6407 30 100.0 35 .............................. TCAGCTTTATTTTCCACCTCGGTTATCTTTTTGCC 6472 30 100.0 36 .............................. AAGCCTTGTTTAATTAGTTCAACCACTCTTGCTTTA 6538 30 100.0 36 .............................. CAACAAAAAAAATGCACTAAAAAATGCACTACTGAA 6604 30 100.0 36 .............................. ATGAATTATAGAGTTTAGTATAATCACTATCAGATG 6670 30 100.0 37 .............................. AAGATAGTACTTTTATAAACTGCTTTAGATAATTTTA 6737 30 100.0 36 .............................. CCGATAACAAATATTTTCGGTGAAAACGGAAGCGGA 6803 30 100.0 36 .............................. GCCATTTCCATTAGGTCTAAAATTTCACCTTTATGA 6869 30 96.7 34 ...............T.............. CAAAAGCTAGATGCTATAGGCAAAAAGTTTGAAA 6933 30 96.7 0 ...................C.......... | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 99.3 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AACATTTGTTAGTTTCATTTGGCTTATGTTGTTAATAGACGAGCTTACATATAGCTATCATATATACTGTAGAATAAGTGAAATTATAGGACTTACTTCACAAATATATATTTTAATAAAATATATCAAAAAGGTATATATAATATAAAATATATGGTGTAATTTATATTATGTATAAAATGAGGTATATTAATTTTCGTATTATTAGTTTGTATGCTTATAGGAAGTAGTGTTCTTGTTTTATTTAATCCTTTTAGAAAATTTATAAGTATTTTTTTTGGATTTATTTCGTTACTTTTTTCTTTATCCCAAACAAATAAAAAATAAGCCATAGTAAAGAAAAATCTTTACTATGGCTTATTTTAATTAAACGAAAATTATAATCACAACAATATGATTTTCTTAATAGAAATAAACATTCACTCAGTTTTAGTTTCACATTAATTGTGAATTCGACAAGTGCCTGGCACCAATTACTATTACGTGTTTGCGTTCAATTG # Right flank : TTTGAATGTGATTTCTATTAATCCCAACCAAGTATTTCTTTTCTAAATCACTCTAATATTATCCCAAACAAATATAAAATAAGCCATAGTAAAGAAAAATCTTTACCATGGCTTATTTTAATCAGTGTTAGTTTCACATTAATTGTGAGGATAAAAAAATGTATAGCCTATATGCATGACTATAAAAAAACTAAAAAACATAATTACATTTAAAAGTGCAAGTAATATTCCTAGTTTCCAATTATATTTAATTAACGTAATTAAAGAAAAAATAAATCCTATAGGACTAACTAAAACTGAAAGCATCCATAAAGGAGTGAGAATGGAACAGAAAGTGGGTATCCATCCTACAATACTTATCAATATACATGAAATTGAAACTATTTTACAAATTTTAAAAAATGTATCATTTGATATTTTAAACATAATTTTCCTCCTAAACTTAATAGTTATTAAGTTTCTTTTGAAAATAATAACTTTTTTCCGAATTAATGTAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 20925-18557 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZN010000031.1 Clostridium botulinum C/D strain IZSVe-TV_4863_2_13 NODE_31_length_33116_cov_71.0045_ID_12866, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 20924 29 100.0 38 ............................. TAACTTGCAACTGCACCTATTTGTTTAGCTGTTACTCC 20857 29 100.0 35 ............................. GCAAAGTGATTTACTGCTGCTACTGCAGCATAAAA 20793 29 100.0 38 ............................. TTTTCTATAAGTACTTGTTCTATTACATCTAATCTTTT 20726 29 100.0 38 ............................. GTAATTTAACACGTTCATTACATCACCTTTTATATCTC 20659 29 100.0 38 ............................. CCAATAAAATCACAATTTAAGCATAGATTTTTGTTTGA 20592 29 100.0 35 ............................. TCGGGACAGGTATTGTTAAGTGATCTTGTAAATGG 20528 29 100.0 37 ............................. ATAGCTCCATCACCTAGCTGGATGCAAGAAAGGCTAT 20462 29 100.0 36 ............................. ATGGTTGGGCTATTTGTTTAGTGCTTACAATTGGAG 20397 29 100.0 37 ............................. TTTGTACTTTTCGATTATGTAATCTACATCTTCCCTA 20331 29 100.0 37 ............................. CATTTTCATGTTATTTTGATGGTCAATAAAAGTTATT 20265 29 100.0 37 ............................. GGTTAAATTATTAACTTTTTCATATTATTTGCTCTTT 20199 29 100.0 36 ............................. TGTTTTCTAATATACTAAGAATTTTTATTAATTCGC 20134 29 100.0 36 ............................. TGAGTGATGTTGTACGTTACACATACGATATCAACA 20069 29 100.0 36 ............................. ATTGTATAAAAGAACAGAGTCTTAGAAAAAACAATA 20004 29 100.0 35 ............................. TTATGGTTAAAGTTCTGTTCTTTTGCATTATATAC 19940 29 100.0 36 ............................. TATTAACATTAAATGATCTTGTTTCTGTTGCTGAAC 19875 29 100.0 38 ............................. TCATGTGGAATTACTTTTATATCATTATCTTGAATAAC 19808 29 100.0 36 ............................. ATGGAGATTAACTCTGCATATATATCGAATACTTTC 19743 29 100.0 37 ............................. GTTACTATGTATGGATTAAATATAAACTTAAATATAC 19677 29 100.0 35 ............................. AATGAATCTACTATTGTTTCTGCTGTTTTTTTCCC 19613 29 100.0 37 ............................. TTTGAACCATATCGTTAAAGTTTTTAATTACTGTTTT 19547 29 100.0 37 ............................. TGAGTTAATACGAGCAAATTTTAAAAGTGTCCCTCCC 19481 29 100.0 36 ............................. TATCTCATCCTCCATTAATAAATAATTTTTAATATT 19416 29 100.0 36 ............................. ATAGTAATAAGAAATAAATTAATAGAAATGGTTTTA 19351 29 100.0 36 ............................. TTTCTTCTAATTGATTAATGTGTTCATACATTTCTT 19286 29 100.0 36 ............................. TCGTTGTCACCTTACGGTAACAAGCGATATTTGAAT 19221 29 100.0 38 ............................. GAATTGGAAGGAACAGAAAAGCAAATAGCTTGGGCTAA 19154 29 100.0 36 ............................. AAAGTAATTACTACTCCTTTATCTATTTCCTTTTCT 19089 29 100.0 36 ............................. GATGGAAGAGATTTATTCAAGAAAGATATAATTAAA 19024 29 100.0 37 ............................. TATCAAGTATTTTAAAATCTAATGTACTATACTTTCC 18958 29 100.0 36 ............................. GTCATACTTGATACAATTTCATTTAAACCGCTTGGG 18893 29 100.0 36 ............................. ATGTCGAGGTTTATGATTATCAACATGATATTGTTC 18828 29 100.0 36 ............................. GATGAATTTTTGGATTTAAGAGTAGCAGAAGAAGGA 18763 29 100.0 36 ............................. AGGAACAAGACAAGTTGCTTCACAGTACTAAATAAA 18698 29 100.0 36 ............................. CTTGTTTTTTGCAACTTATCTTCAGACTTATCATTA 18633 29 96.6 20 ............................G AAAAAAATAGGTAATGGTAT Deletion [18585] 18584 28 82.8 0 ........TT......T.....-.....A | ========== ====== ====== ====== ============================= ====================================== ================== 37 29 99.4 36 GTATTAATAAAACTATATTAGTTATAAAC # Left flank : TATAATGAATATAAGGGACAAATACAGTTTATAATTGACAGCATTAGAGTGGGGTATTACAATCAAAATGCTTCAGAAGAAATGTTAAGTGATAACAATACAGTACAAGTATTGCCAAATAGTTTATTAAGTAAATTTGCTGAATTAAGAGAAGAAAAAAGATATGTAGAGGCTAATGAATTATTCGTAAATGCCAAAAAATATATAGCTAAATATGATAATAACTTTAAAATTTATACAACAGATTATGTTTATGATTTTAAGGGATTAATCATAGGAGAGATGGATATAAATAATCAAATGTTATAACAATTTTGCAGTAAACCTCTGGTAGTGTTTTGGGCAAATTTTTAAAATTATATTATAACGTAGTTATATCAATGGTTATAGAGATTTAATATGAAAAATCGCTTACTGCAAAACTTAATGGTTTTGTATTTAAAGTAGGATGAAATATATGGATTTGTATAGTATAATGAAGATGATGAGAGAAAAATGGG # Right flank : TCTGAATAAAGTTTATATAAATTGTCAAATATATAAGTATTCGGTTTCATTAGTTTGAAATAAAAAAAATTTTTAATGAAAGGAATACTTATGGATTTTAATTTAGAAAAATTTAAAACACAAGGTATTAAAGTAAACTATTATTATGTATGTAAAAGAAAACTTTGGTTGTTTTCAAAAGGAATAGCTTTAGAATCTAGTAATGATAGAGTAATGAGTGGTAAAATTATTCATGAAAACTCTTATAATAGGAAAAAGAATAAGGAAGTTTTGATAGATAATCTATTAAGATTAGATATTATGGACAAGGATTATGTAAGAGAAGTAAAGATAACAAGTAAAATGCCATTACCTGATAGAATGCAACTTCTATATTATCTTTTTTATTTAAAAAATATGGGTATAAATAAAAAAGGATCTATTAATTATGTAAAAGAAAAACAGACAGAAGAAATAGAACTAACCGATTCTATGGAAGAAAAAATTAAAAATACATTAAT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAAAACTATATTAGTTATAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 23928-23176 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAMZN010000031.1 Clostridium botulinum C/D strain IZSVe-TV_4863_2_13 NODE_31_length_33116_cov_71.0045_ID_12866, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 23927 29 100.0 36 ............................. GAACAATTTGAAGGGGAAACATATTATATAGATATT 23862 29 100.0 37 ............................. CAACCAATAAAAGATACTGTTGCAAAAATATTAGTTG 23796 29 100.0 36 ............................. AAGAGAGAAATTCGAGTATTGCCAAAATCAAAATTA 23731 29 100.0 36 ............................. ATTATTTATTTGGATAATCGTGGTCACAAAATAATA 23666 29 100.0 36 ............................. ATTGTACTTTGATACTAAAAAAATAAATTTTGGAAT 23601 29 100.0 38 ............................. AAAATTAATTGTCTTAGGTAAGCTATTAAACTCTTTTA 23534 29 100.0 38 ............................. TCTTTATCTCGATATCTAAAACAACTAGAAGATGCAAA 23467 29 96.6 38 ........G.................... TTAAATACAGGAAATCTTACAGATATACCACCATTTTG 23400 29 100.0 38 ............................. GGATTAGCTGTATGCATATTTGTAAAAATTTTTGGTGT 23333 29 100.0 35 ............................. GGCTCTAACAATTGCGTCATTGCAGTATATCCAGC 23269 29 100.0 37 ............................. CTTAATGTAACACACTTAATATTTAAATCTTTAGCTA 23203 28 96.6 0 ........................-.... | ========== ====== ====== ====== ============================= ====================================== ================== 12 29 99.4 37 GTATTAATCAAACTATATTAGTTATAAAT # Left flank : AGATACTATGCCTAAAGTTGTTATATTGGGAGAATATAAATGGGGAAATAACGTATTTCAAGGATTAATAAATAAAGATGGAGTAAATATAGAGGGGCTTAAAGAAGTATTAGAAGAATATAACCATTGGAGAAATAGTAAAATATGGATAGGTGTTAGTAATAGAATATTAAATGAAGAATTTGAAACTGTAAAAGAAGATCTTGAAAAAGAATTTGGAAATTATGATGATATTGTAATAGGAAGTGTTAAAAACGCTTTTGATGGATATTTAGAATACTTAAAAGAAACTATGAAATAAGACTATATAATTTTGCAGTGAACCTCAGGTAATGTTTTTGGTAATTTTTTTAAATTTTATTGTAACCTAGTTGTATCAACGATTAGAGCAATTTATTGCAAAGAATCGTTCACTGCAAAATTGCAGGATTTATGTAGAATTTTTAGATGAAATATATGGATTTGTATAGTATAATGAAGATGATGAGAGAAAAATGAGG # Right flank : TTACAATTTATAAATTTATAAAAAGAAAGGTAATAAAGTATATGAATGACTTAAATAATAAATTAAAACAATATAAAGCAAAATCGGATGACACTACTATATTTAAACACAATAAAGATTTACTTGTGGCTTTAGAACAAGTATTAAATATACATAAAATATCAGAAGAATTGAAATCTTCACTAAGAAAATGTATAAACTATCACGACATTGGAAAAGTCACTGATGATTTTCAAAATAACATAGAATGTAAGCACAGAAAAATTAGACATGAGATACTATCAGCATCGGTAAAAAATTTAAATGAAAGTGAGAAATTAAGTATATTATTACATCATAAAGTTTTAGATAAATTAGCTCAATTTATTAATAATATATATTATGAAGATACTTTAAATGAAGTAAAAAATAAATTGAATATAGAAGTGGAAGATATAACATCATACTTAAAGAAAATATGTAGGGGTGGTAGAGAAAATCATAAAAAACTACATGACAAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATCAAACTATATTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:86.21%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [86.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //