Array 1 328705-328872 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259221.1 Porphyromonas sp. oral taxon 278 str. W7784 Scaffold1020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 328705 33 100.0 34 ................................. GTGGATGAGAAAACTCGTGCTGAAATTGCTAATA 328772 33 100.0 35 ................................. GAGATGGACGCACGCTTGTCGTAGGAGAGCTCTAC 328840 33 87.9 0 .............................NNNN | ========== ====== ====== ====== ================================= =================================== ================== 3 33 96.0 35 GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Left flank : TAAGCGCCTCCGCCAAGTAGCCCGCATCTGCAAGAACTACGGGCAGCGTGTCCAGGCCTCGGTCTTCGAATGCTTGGTCGATCCAGCACAGCTAGTAAGCCTCCGTCATGAACTCCTCTCGGTGATCGATGATCAAGAGGATAGTCTTCGGATCTACCAGCTAGACAAGCACTACCAACGGCAGATCCACGTCTACGGCAAGGTCACCTCCTTCGAGCTCGAAGGCGAGCTCATCGTCTAGCCCCACCCAAATAAGCCCCGCCCCAGCATCTTCCCCCACTCCCCCGAGGCTCATTCTTCGAAAATCCCCAAGCACCTTCATCTAAGCCTACAGCGAACCCTAAGCGAACAGCGATTTCCTGCATCATCCGCAGAGGCTAGTAATCAGCCACATAACCAAAACTAAAGCAACAAGCGCGCTCCCTCTCTCCCTTTCCATCTCCCCTCTCGCAGATTACGCTTGTTTATCCGCCCTATAATACGCAACTTTGCACCACACT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCCCTCCCGGGGTGCGTGAATTGAAACGTTATCAGTTTGTCACCTAAACAGTCAGTGAGTGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGTTGTGTTGTTGGTTTTCTCACGGCAAAGGTACGCGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGTCGACCTCGACGGGTCTGGCCACAACACCTACCTGTCGCACCCCTCCCGGGGTGCGTGAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCCCTCCCGGGGTGCGTGAATTGAAACGAACTTGGCCTTACGACTATCCGCCACCTTGCTCTGTCGCACCC # Questionable array : NO Score: 8.47 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 328966-329200 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259221.1 Porphyromonas sp. oral taxon 278 str. W7784 Scaffold1020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 328966 33 90.9 33 NNN.............................. GTTATCAGTTTGTCACCTAAACAGTCAGTGAGT 329032 33 100.0 35 ................................. GTTGTGTTGTTGGTTTTCTCACGGCAAAGGTACGC 329100 33 100.0 35 ................................. GTCGACCTCGACGGGTCTGGCCACAACACCTACCT 329168 33 90.9 0 ..............................NNN | ========== ====== ====== ====== ================================= =================================== ================== 4 33 95.4 35 GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Left flank : CCCCAGCATCTTCCCCCACTCCCCCGAGGCTCATTCTTCGAAAATCCCCAAGCACCTTCATCTAAGCCTACAGCGAACCCTAAGCGAACAGCGATTTCCTGCATCATCCGCAGAGGCTAGTAATCAGCCACATAACCAAAACTAAAGCAACAAGCGCGCTCCCTCTCTCCCTTTCCATCTCCCCTCTCGCAGATTACGCTTGTTTATCCGCCCTATAATACGCAACTTTGCACCACACTGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGTGGATGAGAAAACTCGTGCTGAAATTGCTAATAGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGAGATGGACGCACGCTTGTCGTAGGAGAGCTCTACGTCGCACCCCTCCCGGGGTGCGTGAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCCCTCCCGGGGTGCGTGAATTGAAACGAACTTGGCCTTACGACTATCCGCCACCTTGCTCTGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGTTGTAAATATACGGTGTCTCGCAGGGTGCGGTCGTCGCACCCCTCTCCCGGGGTGCGTGAATTGAAACCGTCAGTTCGACTGGGCGGCGGGGGGATGGGATGGCGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGTGGATGAGAAAACTCGTGCTGAAATTGCTAATAGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGATTGACAAGCTCATTACCCGTCATATAGATGCGTCGCACCCCTCCCGGGGTGCGTGAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.63 # Score Detail : 1:0, 2:3, 3:3, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 329295-329600 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259221.1 Porphyromonas sp. oral taxon 278 str. W7784 Scaffold1020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 329295 33 90.9 35 NNN.............................. GAACTTGGCCTTACGACTATCCGCCACCTTGCTCT 329363 33 100.0 34 ................................. GTTGTAAATATACGGTGTCTCGCAGGGTGCGGTC 329430 33 100.0 36 ................................. CGTCAGTTCGACTGGGCGGCGGGGGGATGGGATGGC TC [329442] 329501 33 100.0 34 ................................. GTGGATGAGAAAACTCGTGCTGAAATTGCTAATA 329568 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 5 33 98.2 35 GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Left flank : GAATTGAAACGAGATGGACGCACGCTTGTCGTAGGAGAGCTCTACGTCGCACCCCTCCCGGGGTGCGTGAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCCCTCCCGGGGTGCGTGAATTGAAACGTTATCAGTTTGTCACCTAAACAGTCAGTGAGTGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGTTGTGTTGTTGGTTTTCTCACGGCAAAGGTACGCGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGTCGACCTCGACGGGTCTGGCCACAACACCTACCTGTCGCACCCCTCCCGGGGTGCGTGAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGATTGACAAGCTCATTACCCGTCATATAGATGCGTCGCACCCCTCCCGGGGTGCGTGAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCCTCCCGGGGTGCGTGAATTGAAACTCAGTGTTAGCCTCAGTATTTGCCTTTTGAGCAAGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGTGTCGAGCTTCTTCCTCGGGCGGTGGTCGAGGTACGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGATGATTTCATCACCAGCCGAGGCACCATAATGACGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGTCTGGATGGATACCCCCGAGGAGCTGGAGATATTGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGATAAGTTCATATTCCCTTGCTGATTGATTAGGTG # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,1.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 329760-330131 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259221.1 Porphyromonas sp. oral taxon 278 str. W7784 Scaffold1020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 329760 33 87.9 34 NNNN............................. TCAGTGTTAGCCTCAGTATTTGCCTTTTGAGCAA 329827 33 100.0 36 ................................. GTGTCGAGCTTCTTCCTCGGGCGGTGGTCGAGGTAC 329896 33 100.0 35 ................................. GATGATTTCATCACCAGCCGAGGCACCATAATGAC 329964 33 100.0 35 ................................. GTCTGGATGGATACCCCCGAGGAGCTGGAGATATT 330032 33 100.0 34 ................................. GATAAGTTCATATTCCCTTGCTGATTGATTAGGT 330099 33 87.9 0 .............................NNNN | ========== ====== ====== ====== ================================= ==================================== ================== 6 33 96.0 35 GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCACCCCTCCCGGGGTGCGTGAATTGAAACGAACTTGGCCTTACGACTATCCGCCACCTTGCTCTGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGTTGTAAATATACGGTGTCTCGCAGGGTGCGGTCGTCGCACCCCTCTCCCGGGGTGCGTGAATTGAAACCGTCAGTTCGACTGGGCGGCGGGGGGATGGGATGGCGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGTGGATGAGAAAACTCGTGCTGAAATTGCTAATAGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGATTGACAAGCTCATTACCCGTCATATAGATGCGTCGCACCCCTCCCGGGGTGCGTGAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCCTCCCGGGGTGCGTGAATTGAAACTCTCTAAGCTGAAAGCTAATAAGTGCTCCTCACTGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGTAGATCGGATATGTCCACGCCATGAAAACCATATCGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGCTGATGAGTTATTTCCCCCTACGGCTATCTCTCGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGAATAAGCCAAAAGGCGTAACGGACTAAAATTGTAGTCGCACCCCTCCCGGGGTGCGTGAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCT # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 330291-330459 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259221.1 Porphyromonas sp. oral taxon 278 str. W7784 Scaffold1020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 330291 33 100.0 36 ................................. GTAGATCGGATATGTCCACGCCATGAAAACCATATC 330360 33 100.0 34 ................................. GCTGATGAGTTATTTCCCCCTACGGCTATCTCTC 330427 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 100.0 36 GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Left flank : ACTCAGTGTTAGCCTCAGTATTTGCCTTTTGAGCAAGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGTGTCGAGCTTCTTCCTCGGGCGGTGGTCGAGGTACGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGATGATTTCATCACCAGCCGAGGCACCATAATGACGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGTCTGGATGGATACCCCCGAGGAGCTGGAGATATTGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGATAAGTTCATATTCCCTTGCTGATTGATTAGGTGTCGCACCCCTCCCGGGGTGCGTGAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCCTCCCGGGGTGCGTGAATTGAAACTCTCTAAGCTGAAAGCTAATAAGTGCTCCTCACT # Right flank : CGAATAAGCCAAAAGGCGTAACGGACTAAAATTGTAGTCGCACCCCTCCCGGGGTGCGTGAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCTCCCGGGGTGCGTGAATTGAAACTCTTCGTCCACATATCTTGCCTGTTGCTCTGTGATGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGACAAATCCGCCCGAACGTCGAACAAGATCCAAAAGTCGCACCCCTCCCGGGGGGCGTGAATTGAAACATTGACGGCGGTAGCGCCAACAGCTGGAGCGGGAGGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGAGTACTGCTCAAGCTGGATCGGTTTCTGCTCCTGGTCGCACCCCTCCCGGGGTGCGTGAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 331020-331252 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI259221.1 Porphyromonas sp. oral taxon 278 str. W7784 Scaffold1020, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 331020 33 93.9 34 NN............................... GCTTCAGATATTTCGGTTGTGGTGAGTATGGACC 331087 33 100.0 34 ................................. GAAACCTGCGAAGAGATAAGCTGATTTTGCAAAT 331154 33 100.0 33 ................................. CAGGAGAAACTATGGCATATGACTAATGACCAT 331220 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 4 33 98.5 34 GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Left flank : ATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCCCTCCCGGGGTGCGTGAATTGAAACTCTTCGTCCACATATCTTGCCTGTTGCTCTGTGATGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGACAAATCCGCCCGAACGTCGAACAAGATCCAAAAGTCGCACCCCTCCCGGGGGGCGTGAATTGAAACATTGACGGCGGTAGCGCCAACAGCTGGAGCGGGAGGTCGCACCCCTCCCGGGGTGCGTGAATTGAAACGAGTACTGCTCAAGCTGGATCGGTTTCTGCTCCTGGTCGCACCCCTCCCGGGGTGCGTGAATTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCAAAGACATACGAGTAACCGAGAGGGTCTACAGCAGTCGCACCCCTCCCGGGGTGCGTGAATTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCCCTCCCGGGGTGCGTGAATTGAAACATCACGTGGTGTAGTCCTTATTGTCGCGGATGAAGTCGCACCCCTCCCGGGGTGCGCGAATTGAAATTCGGGAAGGCTACGGAACCGAGCCTCAGTCTGATGGGCCCACTCCCTGGGATACTCAGACTGAAAGAAAAGGAGCGAGAGTACTAAGATTGACAAGGTACCCCAGGGGGGGATGCCTCTAACGCTTTTTACTAAAACTATAGCAAGCCACAATTAAATGCAGAGACTCATTCACCTGCCCTTGGTAGAGGATTTCAGTTAGAGGGTTGAGCAGGCTATTGCACTCTCCTCCTCGAGAGA # Questionable array : NO Score: 8.79 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCCCGGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,1.42 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //