Array 1 84246-83749 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEIT010000003.1 Streptococcus suis strain ID30190 NODE_3_length_84387_cov_44.087301, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 84245 36 100.0 30 .................................... CAATGACGATCTGAGCAACATCTGCCTGCT 84179 36 100.0 30 .................................... TCACGAATTGAGCCAGTGCCAACAGCACCA 84113 36 100.0 30 .................................... TAGTAACAAATAAAGAAGTAAAAGAGGAAA 84047 36 100.0 29 .................................... GGATTATTGAGTGGGTTAACATCTGCAGG 83982 36 97.2 30 A................................... AACATCAATGTATTTCTTTTCGACCTTGTC 83916 36 100.0 30 .................................... CACTTCCTTACGCTACTAATTTTCAGTTAA 83850 36 100.0 30 .................................... CTTCTGGTAGTTATCCCCATAACATTTGTA 83784 35 83.3 0 .......................T..T.-....TCA | T [83760] ========== ====== ====== ====== ==================================== ============================== ================== 8 36 97.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : GAAAAATAGGGATAAAAAACCTCCTTTTTGTGCGCCCTAAATACAAAAACTATTCCCGTTTTGTCATGAACTGCTCAGACGAGAATAGTTTCTTTAGCTGCTTAAATGCTTAACTTAATGACATTGGGTTGCCATTGAGAC # Right flank : TAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGTGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTTCAAACCCTAGGAGCCTTCAAGTTGCCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 801-189 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEIT010000075.1 Streptococcus suis strain ID30190 NODE_75_length_9458_cov_3.207802, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 800 32 100.0 34 ................................ TGCTCAATAGCTCTTTTAATCAAAACTTGAACCA 734 32 100.0 34 ................................ CAAATTCTTTTGAGATGATAGCCATCTCATAATC 668 32 100.0 33 ................................ ATAATCGTTGCGATTTATTTTTTTAAGCGGGAG 603 32 100.0 34 ................................ ACATAGCCGTAGCACTCTGTTTGATATGTGCAAA 537 32 100.0 34 ................................ TTCAAATATTACCTCCAAATTCTTGAAAGATATC 471 32 100.0 34 ................................ TATGTTTTCGGCAGGTAAAGAAGTTATGTACATT 405 32 100.0 34 ................................ AAAATCATCGATTGACAGAGAACACTGGTCAAGC 339 32 96.9 23 ......................A......... AACGTACCTGCTCGGACGGACCG Deletion [285] 284 32 81.2 32 .......T..T....A....AC..G....... TGGACGGCACTATGGGAACACCTGGCACATCG 220 32 68.8 0 ....T..T..TTG..TA.A...A.G....... | ========== ====== ====== ====== ================================ ================================== ================== 10 32 94.7 33 GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Left flank : GCAAAAGCTATTCGAGGCGAGTTGGATAGCTATCCTCCATTTATGATATAGGAGCTATATTATGATGATATTAGTGACCTATGATGTCAATACAGAGACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTTTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATTCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTTCTTCTGTTATAGATTATCTATGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTATATCTGTAGAAACTTTATTTTTTACAAAACAGTGTCAAAAGGCACT # Right flank : TTGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGATAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGC # Questionable array : NO Score: 8.94 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //