Array 1 193827-191250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIPRI010000004.1 Leclercia adecarboxylata strain 33MP1 NODE_4_length_368924_cov_7.452176, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 193826 29 100.0 32 ............................. CATCCACGCGCGCTGCCGTAATCTCGGAAGTA 193765 29 100.0 32 ............................. CCCTGGGGCAGTGTCTCAGCACCGGCACCGCC 193704 29 100.0 32 ............................. CAATGCTGAACGCGGGGAATACTGAACGCAGT 193643 29 100.0 32 ............................. CTATCGATGAGTATATTTTTGAAAATATCGGC 193582 29 100.0 33 ............................. TGATCAGTCCCCGCGAGCACTTTGCCGGTGTTG 193520 29 100.0 32 ............................. AATCGGTCATTCTGTATCCTGCATAAAAAAAC 193459 29 100.0 32 ............................. CCATTAACTGGCTTGTCTCTTCATCTGTGGCA 193398 29 100.0 32 ............................. GGTAATGTTTCTGCCATGTTCAGGGGCTGAAG 193337 29 100.0 32 ............................. GGGCTGCAACAACTGGCACAACGGATGTCAGC 193276 29 100.0 32 ............................. AATTTCGGCTCCGAACTTGGACTGCTGGCACA 193215 29 100.0 32 ............................. CATTTAGATTCTGCCGATACATCATCACGATA 193154 29 100.0 32 ............................. CGTACCGTCAGGCTTTATTGAATATAACCAGA 193093 29 100.0 32 ............................. GGCCGTATTCAACGCAAATAACCAGGGCGATC 193032 29 100.0 32 ............................. TGCCTACCCAGCTAGGGCAGGCCGCAGGACTA 192971 29 100.0 32 ............................. GGTGAGGGCGTGGAAACCGCCGCTAATAACGT 192910 29 100.0 32 ............................. CGTGAGGCCGGGTTTATCCAGTGCGGCAGCGA 192849 29 100.0 32 ............................. CCATAATCACGCCCCCAGATATTCGGCTTGCA 192788 29 100.0 33 ............................. GTCTTTAGTCGTGCCGACATAGAACGTGTCGCA 192726 29 100.0 32 ............................. AGGCTATTCAGGATGACGATGCTGATTTTGTA 192665 29 100.0 33 ............................. CGGGACTGTCGGGCGATTCTCTCCGCAACGTGC 192603 29 100.0 32 ............................. CACAATTAAGATTTAATCACGTGCTAACAGTG 192542 29 100.0 32 ............................. GCGGCGCAAAACCTTTCAGCCGGGCGCTAAAA 192481 29 100.0 32 ............................. TTGGAAATCCAATCAGCGATGGATTCTTTAAC 192420 29 100.0 32 ............................. GACGTCAGAAAGTTTGAACAGGCGCTGGACTG 192359 29 82.8 10 ................GT.....TC...C ACAAACAGAT CA,T [192336,192339] Deletion [192321] 192317 29 100.0 32 ............................. GCGCAGATTGGGAGTTTGACCAGCGACCAGAT 192256 29 100.0 32 ............................. CCCGGCAGCTAAACCCGAACACCAATACCGAC 192195 29 100.0 32 ............................. AAAAAACAATCCAGTGCTTTATTCAATAACGC 192134 29 100.0 32 ............................. CTCACCTCTATCGCTATAGTAGAAACATTGAA 192073 29 100.0 32 ............................. GTCGCTGGGTATGGTTTATTTTGCCAGTGGCT 192012 29 100.0 32 ............................. CGATCCCGGATATTGCGGCAGGGAAAAAATTT 191951 29 100.0 33 ............................. CCGCAGCGCAAACAATCCGGTAAAAACGCACGC 191889 29 100.0 32 ............................. CGCAACCACAGCCGCTTCGCAGATATATGCGA 191828 29 100.0 33 ............................. AGGCCAGTAGACCCGCAGACAATCGCCAGCCGC 191766 29 100.0 32 ............................. AATACCGACCGCCCCGGATTTACCAGGATGAT 191705 29 100.0 32 ............................. CGCAAAGAAATTCATCCGAGCCGTAGCGCTCT 191644 29 100.0 32 ............................. TTCAAACAATTAGCCGGTGCCGTTCGCAAATT 191583 29 96.6 32 ............T................ CATCCATTAGCATTATTACAGGGATAAAATAA 191522 29 96.6 32 ............T................ AAGAATTATACTGATAACTCTTCACGTCAAAC 191461 29 96.6 32 ............T................ GATATCGCGCGGTGGGACGCGCGGCAGCGGGA 191400 29 96.6 32 ....................T........ GTATACGCCAGCGCCAGCACCGGAACCATTAC 191339 29 93.1 32 .................A..........A TGGGATAGTGTGGCGCGGCCTGATACAACGTA 191278 29 75.9 0 ..C.......AC.T...A.......C..A | ========== ====== ====== ====== ============================= ================================= ================== 43 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTCTGGCTGCCGGTGAGATTGAGCCGCCAAAGCCTGCGCCAGATATGTTGCCCCCCGCAATTCCTGAGCCTCAACCGCTGGGGGATAGTGGCTATCGGGGGCGCGGCTGATGAGTATGGTCGTTGTGGTCACAGAAAATGTACCGCCGCGTTTGCGGGGAAGGCTTGCCATCTGGTTATTGGAGATCCGGGCTGGGGTATATGTTGGTGATGTCTCTAAACGCGTGCGGGAGATGATCTGGCAGCAAATCATCCAGTTGGGTGGGATTGGAAATATCGTTATGGCCTGGGCGACAAACACGGAATCAGGTTTTGAGTTTCAAACCTGGGGGGAAAACAGACGCATGCCGGTAGATTTGGATGGGCTGAGGTTGGTTTCCTTTATTCCTGTTGAAACTCAATAAGTTGAAAGCTCTTTAATAATATGGAAATGTTGGATTAAGGTTGGTAGGTTGTTGGTTGCTGAAAATTTCTATTAAAAACAGCAAGATAAGATTAGT # Right flank : CGACTAATCTTACTCCGTATAAAAATAAACAGAAAAATGCCCAGGCACCGTTTGGGTGATGCACTTTATCAGGCTTTTTTCCCCGCTTTCGCCAGTTCCTTCACCAGTGGCAGCATAATGCGCACCACGTCCCGGCTGCGGTGTTCAATCCGCTGCGGGAGGGCCTCGTCGATATGCTGCAGATTATCCAGCCTGACGTTATGCCAGCTCGATCCCTGTGGGAAGGCTTTTGATTTTGCCCGCTGCTGATAACCGTCTTTCTTACCTAATGACCAGTTGGTGGCCTCAACATACAGCACCGGGATCCCGGCTTTATCGAAAACTTCACCGTCATTACAGCATCCGGTGCCTTTCGGGTACGCGGCGTTCCCCCCCGGGTTGGTCGCGGCAAAAATCCCGTGGGCGCGGGCAATCGCCAGCGCGCGGTCGCGGGTCAATTTACGCACCGGGGCAGGGGTGGTTTTTCCGCTGTTAAAATAGAGCTTATCGCCCACGATTAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //