Array 1 103095-104709 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABFF01000007.1 Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537 gcontig_1106390373080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 103095 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 103156 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 103217 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 103278 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 103339 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 103400 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 103461 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 103522 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 103583 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 103644 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 103705 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 103766 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 103827 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 103888 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 103949 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 104010 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 104071 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 104132 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 104193 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 104255 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 104316 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 104377 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 104438 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 104499 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 104560 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 104621 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 104682 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121217-123686 **** Predicted by CRISPRDetect 2.4 *** >NZ_ABFF01000007.1 Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537 gcontig_1106390373080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121217 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 121278 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 121339 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 121400 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 121461 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 121522 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 121583 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 121644 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 121705 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 121766 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 121827 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 121888 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 121949 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 122010 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 122071 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 122132 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 122193 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 122254 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 122315 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 122376 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 122437 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 122498 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 122559 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 122620 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 122681 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 122742 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 122803 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 122864 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 122925 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 122986 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 123047 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 123108 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 123169 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 123230 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 123291 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 123352 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 123413 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 123474 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 123535 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 123596 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 123657 29 93.1 0 A...........T................ | A [123683] ========== ====== ====== ====== ============================= ================================ ================== 41 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //