Array 1 65564-63900 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALIQ010000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain KUFSE-CM180 Sal180_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65563 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 65502 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 65441 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 65380 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 65313 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 65252 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 65191 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 65130 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 65069 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 65008 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64947 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64886 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64825 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64764 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64703 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 64642 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64581 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64520 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64459 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64356 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64295 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64234 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64173 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 64112 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64051 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63990 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63929 29 96.6 0 A............................ | A [63902] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82948-81822 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALIQ010000006.1 Salmonella enterica subsp. enterica serovar Heidelberg strain KUFSE-CM180 Sal180_contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82947 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 82886 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 82825 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 82764 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 82703 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82642 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82581 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 82520 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 82459 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82398 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82337 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82276 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 82215 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 82154 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 82093 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 82032 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81971 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81910 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81849 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //