Array 1 170186-166918 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVPG01000001.1 Pontibacillus litoralis JSM 072002 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 170185 33 100.0 35 ................................. ATCGCCCTACACACTCGCACCCTTATCAGAATAAC 170117 33 100.0 34 ................................. CCCATCCACCCGTAAGCCCATACCCTACAGTCGT 170050 33 100.0 33 ................................. CTGCTCTATTTTTATTAGGAGGAAAATGAAATG 169984 33 100.0 33 ................................. GTAATTGCGTGCTTTCTCTCGACATTTCTTTTA 169918 33 100.0 37 ................................. ATTATAATAAGGAAGGAAAATGACTATGCGTATTACT 169848 33 100.0 34 ................................. AAAAACGCATTAACCATTTTTGATAGGTAATAAT 169781 33 100.0 35 ................................. TGTTCTTGATTTAATGTAATCAGAGCGCTGTTCGA 169713 33 100.0 35 ................................. CATCTTCTTGACCTCCTTTTTGATTTAGATATCCC 169645 33 100.0 33 ................................. TCCTTTTTTTTGTTTCTTTTGCTCCAGCTTCTC 169579 33 100.0 33 ................................. TTGTGTCACCTCTTCAAAACTATTCCCTTCTAC 169513 33 100.0 37 ................................. CGCGAAGGGTACATATTTTATCGTAAATAACGTAGAT 169443 33 100.0 36 ................................. GGTTTACGTCTGACAATGCCTGTAAACAACACTCTC 169374 33 100.0 33 ................................. TTGTTCTTTGCGCTCTAGCGCTTTTTTATCGCA 169308 33 100.0 35 ................................. ACCTGTAGTTGGTGCGCTCACACCTTTGAATTTTC 169240 33 100.0 35 ................................. ACTTAACCAACGTCTATAATCTGTTATCCAAACCA 169172 33 100.0 34 ................................. CTAAAATTTGTACCGCAAAAATCTGCACCTCTTA 169105 33 100.0 33 ................................. TTCAAGCGGTGTTTTTGATACAATAACCAACCA 169039 33 100.0 33 ................................. TGGTGCACCAATTGCACTAATGTCATAAACCTT 168973 33 100.0 33 ................................. TTAAATCTGCACCTCTTAAATCCGCTCTTCTTA 168907 33 100.0 32 ................................. GATACCCACATGAACCGTCTTCTTTTAGATAC 168842 33 100.0 33 ................................. ACAATCACCTAATAAGGGTAGAGGGTCAATTGC 168776 33 100.0 35 ................................. CTCACCCTCCATCGGCACCGTGATATTTTCGATTG 168708 33 100.0 37 ................................. CCCACGTTAAGAAACGTCGGGGTGGCCGGCTGATACG 168638 33 100.0 36 ................................. TCACACCTGGAAGCACATTATCGTAAAGCGGCGACC 168569 33 100.0 37 ................................. TCGCTCTCTCAAATCAGCTATAGCCAACTCCGCGTTT 168499 33 100.0 35 ................................. TTTAATACGATCCATTTTAAAAACCCCTTTATAAA 168431 33 100.0 36 ................................. AATCGTTAGCCTCCTCGCTCAACTCCGCCACAATCT 168362 33 100.0 36 ................................. TGGAGCTTGAGCGTAAATGGAACAGTCCAGAAATGG 168293 33 100.0 36 ................................. ATTACTCGGTTAATTGTTTGCGCCTGACCCAATACC 168224 33 100.0 34 ................................. ATACTCTTACCTCCAATTATGTATTCATTTATAT 168157 33 100.0 34 ................................. GTTGAGGCGTCGCTTTCTAAGTCGTCTAGAATAA 168090 33 100.0 34 ................................. CGTGCTTAGTTGCTCGACTAACGCCACTTGATCT 168023 33 100.0 33 ................................. TTAGTGTTGTCTTTGAGATTAACACCGTACTTC 167957 33 100.0 34 ................................. CATTTTAGGACTCTCCTTTTAATGCGTTTAACTC 167890 33 100.0 33 ................................. GCAAGATAATGGGGTGATAACATGAGTAAACGA 167824 33 100.0 34 ................................. CGATTTTATCTTCATCAAAATATTTCGTTAAAAA 167757 33 100.0 34 ................................. AACCTTCACAGATTTTAAAGATTCAAATTTAAAT 167690 33 100.0 33 ................................. ATTGAATTTGTTGCAACCTACCTAGTATAAACT 167624 33 100.0 33 ................................. TCCGTTTTCGGAGGATGAGTTTATGAAATTACT 167558 33 100.0 34 ................................. CATTTTAGGACTCTCCTTTTAATTGTTTTATTTC 167491 33 100.0 35 ................................. ACTACCTACAACGAACGTATTATTAACGTTCATCC 167423 33 100.0 35 ................................. ATTTGCATTAACGTTTTCCATCGCTTTATAAATTT 167355 33 100.0 34 ................................. CCCTAATTTTTTAATTAAACCCTCGTAATTTATA 167288 33 100.0 36 ................................. TGGTAACAAAAAAGAAGCTACTAATATAAAGATAGC 167219 33 100.0 34 ................................. CATTTGAAAATAGTAGATACGCTGGGCTAAAGGA 167152 33 100.0 35 ................................. GGTTTTAGAAGTAAACTGGTTTGTGTTGCTCGGTG 167084 33 100.0 34 ................................. AAATCCATCCACACTGAACTCATTTTAGCGAATG 167017 33 100.0 34 ................................. ATTTTAATTCCTCCTGTCATTACGCTGTTACAGC 166950 33 93.9 0 .............................T..G | ========== ====== ====== ====== ================================= ===================================== ================== 49 33 99.9 34 GTCACTCTCTGTATAGGGAGTGTGGATTGAAAT # Left flank : AAGCGAGAACAACATCGTTTCAATCTTTAAAGGATATTGTTCCAGAAATTCAATCATCAGAGCATGTAATGATAGTAATCGGCCCTGAAGGTGGATTTAGTGAGCACGAGGTAGAACAATTACGAGCAGCTCAGTTTACATCTGTTCGGCTAGGTCCTAGAATTTTACGAACAGAGACAGCTTCTTCCTATATATTGGCAGCCATTTCTTACCAATTAGAAGAACTAAGATGATATACCAATGTCAACAAGAGCTTTTCACATGTTACGTAAACATAGTTATGATTCGATCTTGTCGCAAGTCAATGCTGCTCAACATAAATGACTATAATTTTAACACGGTGCGAACCCCAAGCTCACATGAAAGCCTCGGGAGGTTCGCACTCTTTTTTTGCCTCTTTTCATGCAAAATTGGTACATTATTGGTATATTATCCAATGAAGTATTTCCAATAAACACAAAATATAGTATACTAATAATGCGAAAACACTATATTTCGCA # Right flank : GGCACACTGCGATACAATGAACTGTTAAAAGTGTTGACAAACGAAATAAGTCAAAAATAACGAATGAGCATCCTTTAAACGATGTTCATTCGTTTTCTATATTTTAGTAAAGGATAGTCCGTTTAATTAGAAATCTGTGTACTGTGTGATTTCTCTGCTATAAACCCATTTCACTTCCTGCCCTTATATTTGGAAGTTACTTAGATTTTAAACAACAGGATAGCCAAAAGAGTTTACGTTAAATCATGATGTCATAGTGTAGTGTACGTGACGCTCATACCTTTTACACTTCTGCTAAATAGCTAATATTTTCGCTCTATCACGAATGGCTTACTACAATGTTCAGCATAGTGATAATCCTATCGCTCCTATGAAAAATTAATATTAGTTAATTAAGTTAGAAAGAGGGTATAATAATATGATATTATTAATTTTATTGATGATTTTTACCGTGAATCAATTTCATAATTGCTTTGTTCCACAGAATATCGGAATGAGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCTCTGTATAGGGAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.58%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATAGGGAGTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.10,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 110289-108868 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVPG01000003.1 Pontibacillus litoralis JSM 072002 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 110288 32 100.0 33 ................................ TCTTCTTCTGTTACGATACCGTCTGCGTATGCT 110223 32 100.0 33 ................................ TGCTTCATCCGCATCTTTTGATAGTTTTTTTAA 110158 32 100.0 35 ................................ TCCAAATTACTAATTTGAGATATTTTGATTAAATC 110091 32 100.0 35 ................................ TGTGTATCCATATTCCAAATATCCATCATTAAAAA 110024 32 100.0 33 ................................ TTTGTTAAGACAAGGGAAAATTCCGCATCAAAG 109959 32 100.0 32 ................................ AAGCCTTTTTCGAGGAAACCCTCTAAATCTCC 109895 32 100.0 34 ................................ CCATTCGCACTTTCATGCCGTATATATAGTGCGC 109829 32 100.0 33 ................................ AATGACGTTTTGTTTAATGTCAGAAAAATCGAT 109764 32 100.0 36 ................................ TTTGATGCTGTTTCAAAAGAATTCCCGAACCACGAA 109696 32 100.0 35 ................................ TGGTGTGTCGACTAGTAAAAGACGAATGTCTTCTG 109629 32 100.0 34 ................................ TTCCGTAAAGCCAGACTCTGCAACGGATTCAGCG 109563 32 100.0 34 ................................ AACGAGTATAAAAAAGCACTAGAATCGGTTACAG 109497 32 100.0 34 ................................ AACGTACTAAGCGTGCATTGGGTAAGGTCCGTGG 109431 32 100.0 33 ................................ TTTATTGTGTACACTTTATCATGTATATCCAGC 109366 32 100.0 37 ................................ GTGTGCGTAGTCCGAAATAAAGTCGAATACTTTGCGC 109297 32 100.0 33 ................................ CCCTGATCTAGTTGGCACGTTATCTTCATTTAA 109232 32 100.0 35 ................................ ACATTGTGATGGTATATGCATAATGTTTCTAAGTT 109165 32 100.0 34 ................................ AGCGTTTGTTGTGCTTAATCTCTCATTAACTTTT 109099 32 100.0 33 ................................ ATCTGCATCTTTGTAATTGTAAAACCATTGTGA 109034 32 100.0 36 ................................ GTCAGCAGTTAAAAATGTTTCATCCTCAAGCAATTT 108966 32 100.0 35 ................................ TCTTCACGCACTTCCATCTCTTTCAATTCAATAAC 108899 32 96.9 0 ..................A............. | ========== ====== ====== ====== ================================ ===================================== ================== 22 32 99.9 34 GTCGCACTCCTAGTGGGTGCGTGGATTGAAAT # Left flank : GAGTACCCACCATTTCTATGGAAGTAGGTGCTTTGATGTTAGTTATTATTACATATGATGTTAATGTAACAAGTCAAGGTGGAGCAAGAAGGTTGAGGAAAGTATCAAAAGCATGTCAAAATTACGGACAACGCGTTCAAAATTCCGTATTTGAATGTGTATTAGATTCAACACAATTAAAGCAGCTAAAAATACAATTAACAGAGATTATTGATCAAGATAAAGATAGCTTAAGGTTTTATAATCTAGGGAAGAATTACAAAACTAAGGTTGATCATATTGGCGTGAATAATTCATATGACATTGACGAACCTTTGATTTTTTAGTTTAGGTGCGAACCCTAAGCTCACATAAATTCCTAAGGGGGTTCGCACTAATTTTAATGTAAATATGTTGTGTTATGAACGAATATGAACCTCGGTTTTTAACAATACCGTATTTGTTATGTAAATATTGACCACAAAACATCCTTATATAGGAAATTTAGTGGTTATTTTAGC # Right flank : TAGGCTCAGCTAGTTGATTCTACATCATCACACTTGCTTCAATCCCCCCACCTCCTGCATCACTGATGACAAGGAGATGGGGGGATTTTTTACACGCTTTTCTCTTCCATTACGATCGTTTCATAAGTTTCTATTTCGGTGTACATGCCTTTGGACATACGGACAAAAAAGTATGTTCCTAATAAGAACCAGGAGCAACCATGATCCATTCGTAAGGCCAGACGAGCGCTGCTGGAAAACCGGGCATGTATAGTGCGATGAAAAATAGACTTAAGATTAGGGCGGCGTATCCGTATATGGGTGTTCTACCTGCTTTAAATGGTCTTGGCATGTTTGGTTCTTGTTTGCGTAGTCTTATGAAGCTCCAAGCGACTAAGAAGTAGGCGATGACGATTCCTAAGCCACCTGCATTGACAATCCAGACGAGGGCAGATCGGCCTAATAAAGGTGCGAGCATGGATAGTACTCCGATAAATAGTATAGCGTTTGAGGGTGTTTTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCTAGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 118937-121570 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVPG01000003.1 Pontibacillus litoralis JSM 072002 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 118937 32 100.0 36 ................................ CCATCTGTAAGTGGCGGTGGTTCCGGTGGTTCTATT 119005 32 100.0 34 ................................ GTAATAGCAATCCTAATTTTGCGAATTATGTTAG 119071 32 100.0 37 ................................ AACAGGGGAAGGAGACAAACCGATCTCTGATAATATC 119140 32 100.0 34 ................................ TCCATTATCCAAGTCCTCAATAAGCGCTTGCATG 119206 32 100.0 33 ................................ TGTGACAGCTTTGTCACCTACCATTGTATACTT 119271 32 100.0 34 ................................ TTTGCTACGGATCACTACTACATTACGTCATCGA 119337 32 100.0 34 ................................ TGCTTTGGTTCAGCAGGCGTAGGCTCTTCTTTAG 119403 32 100.0 35 ................................ AAAGCTATATGCTCGGCTCCTACCACACCTCTCAC 119470 32 100.0 37 ................................ ATTTCCGCCTTTAGCGACTTGCTTACCCCATTTTTGC 119539 32 100.0 37 ................................ AACTTTTAAACATTGGTCAAAAGGGCATCGTGTAACG 119608 32 100.0 33 ................................ TTGCTTTTTTAGCACGCTCTAACGTGCTAAATG 119673 32 100.0 34 ................................ TTAATCTTATACCATTCATTCCTCATTGTGTTTA 119739 32 100.0 36 ................................ CTTTACTTTTTGGAGCATTTTTATAATTCCAATAGC 119807 32 100.0 33 ................................ GACGCTCTCATTTAAAATGTAATCTAGTTGCAT 119872 32 100.0 33 ................................ CTTGGTTATAGACAACGGCAGTTAACTCCGTTT 119937 32 100.0 35 ................................ CTCTCTATCAAGCACTTATGCCGTGCTTGATTGAA 120004 32 100.0 33 ................................ TTTTGAGTTTTGTTCTAGCTTCTTTTGCGTTCT 120069 32 100.0 34 ................................ CTCTTGAGATTGAGCCAATTCTTGCATTGAGCCG 120135 32 100.0 38 ................................ TTAAGCGATTTTAAAGTAGTTAACATGGAAACTGAACC 120205 32 100.0 33 ................................ AACATCGACACCGCATTCTTTAAATCTTTTAAA 120270 32 100.0 36 ................................ CGTCAGTGTATATAAGCGTTTATCAGTCATATCCTT 120338 32 100.0 34 ................................ GGGTATGTTCTATATATATCCTCAAGTAGTCGGG 120404 32 100.0 33 ................................ TTTTAGGTTGTGATAAATGCCTCTTCTTGTGGC 120469 32 100.0 36 ................................ TATTTCTACGGTAGTGGATTTGACAAACCGTCAATA 120537 32 100.0 35 ................................ GTGCATACTCAACGTCAACATCTTTTGACTTACCT 120604 32 100.0 35 ................................ CACCTCATAGTCTATCCTAGCCAGCTGGCTGTCCC 120671 32 100.0 33 ................................ ATCCATTGTTTTAGCCATTATGATTCCTCCTCA 120736 32 100.0 37 ................................ ACAAATTTTGGCTCCACGTTTACGGAGGCTGGTGAGT 120805 32 100.0 34 ................................ CTTTAATACAAAGAGTTTCCGTAATATCTTTAAC 120871 32 100.0 35 ................................ CCGTAACCAAAGCCGGATTATCAATGTCTTTTTGA 120938 32 100.0 36 ................................ CTGCCGTACATATCCCTACGGACAAACTAACGGGGG 121006 32 100.0 34 ................................ AACGTGTGAAACATTTTTAAAAAAAGAACAAAAA 121072 32 100.0 34 ................................ TGCAATATAAAACGTAAATTTACGCCCTTCTCGC 121138 32 100.0 38 ................................ CTCGATCCGTGGGTCAGCGATATTTTTAGCTGCGTTAA 121208 32 100.0 35 ................................ TAATGTAGTATCAAGTCTTGCATACGGCGCAAAAC 121275 32 100.0 34 ................................ ATGGCACCGCGAGCATATTTCCAGCCCGCGGTAA 121341 32 100.0 33 ................................ ACAGCTTCGCTATGGGACTTGTCGTTTGATAAC 121406 32 100.0 34 ................................ TTCGACCCATGGCTCTCCTTCGAATGTTTTGCCG 121472 32 100.0 34 ................................ ATCTAGTGTGGTTTCGAAAGTCTTAGAACCTAAC 121538 32 96.9 0 ..............................T. | A [121565] ========== ====== ====== ====== ================================ ====================================== ================== 40 32 99.9 35 GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Left flank : CTTCCAACAAATGCTCTTTTACCGTCTGTATTTCTTGATCACTTTGGCGAATATGTGCAATGTATTCCAATTGTCAAACCTCCCTAAAGAAGCTATACTAAAAACAAATCAATATACCTAAATATAACTGTTTTAAAAACTATCTCCACTATAACAATTATACTATTTAATAGGTAAAAAGTATTGATGAACAGAATATTTTTACAAAGTTTACAAAAGGCATAGCTTGTTGTATAAATCATTCTCTTAAGACTACTGTATCAAAAATGGTGCACATATTTTTGTACACCCCCTAATTAAATTTATTAACAATGTAAAAACACTTTTTGAAGTGCGAATCCGAAGCTCACATGAAATCGCTAGAAGGTTCGCACCTGTTTTATCATAGTTTTAATACTAGATATCATGTATAATAGTAAATAAACACCAAATGAACCAACTTACTTGCGATTAATAATAGGATATTTTGTTTTTTCTAGGGAAAACCTATATTTTTCGCT # Right flank : TTCACCTATACCTCATATATAACCAAAACTATTACCGCCCCCATATGAGAGCATAAAGGAATTTATGTTCAATCATGTTTACAAATGGTAAGTCAGCAGTAAACATGCACACCCAAAAAGCCCTAACCAAAAAAGTTAGGGCTCTCGCTTAGTTACATTAAATATTCAATCCTTCTCTATTTCCTTTACTCGCCCAACTATACCACCTTCAAGCATTACTTTAATGCCGTGCGGATGCTGTGAGGAGTTCGTCAATATTCTAGAAACAACGCCTTCTGTTAATTTACCGGTTCGTTGATCTTGCTTTTGTACGACCTTCACGTTCATGCCTGGCTTGATATTTTCTCGTTTTGTTCCTGTCAATTTCAGTGCTCCTTTAAGTAGTATGTTATTTTCATTCACCATAACATAGCTCGCTTTTTTATCATCTACTAATATGGAAAAGGGGAAAAATTATTCTCTCATTATAGCATTGAAGCCGTAAGATTATAAGTCACTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //