Array 1 39147-43197 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAIOD010000015.1 Dorea longicatena strain MSK.10.16 NODE_15_length_77087_cov_346.667, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 39147 30 100.0 37 .............................. AAGAGATACTAACAAAAATGGATATGCTTTCAGCAAC 39214 30 100.0 34 .............................. TCCTTTGGTTGCAGTGACGGTACACTGTCTATTA 39278 30 100.0 33 .............................. TATTCTTGCAAGACCTACACAGCCACCTAAATA 39341 30 100.0 37 .............................. TGCATTTTGCAATATGTGTCGAAATCTTCCTTCCTTC 39408 30 100.0 34 .............................. AAAAGAATTACTCGATATATTTAAGTTTTACAAT 39472 30 100.0 36 .............................. ATGTTTCTCTGTGTTGTGCAACAACAATCTGAAATC 39538 30 100.0 35 .............................. CAGGCAGACACCATAAACGTTCCAACGTCTGTTGC 39603 30 100.0 34 .............................. TTCCCTTCTATAATCATTCCATTTCCATCATACC 39667 30 100.0 34 .............................. TTGTTTACACGTCTTGCAAAACCAACGGACACAG 39731 30 100.0 35 .............................. ACATTTCCAACTCTTCTGTCTACGCCAGACGATAA 39796 30 100.0 36 .............................. TATTGTCAGTGCCGGATTCTATCCCAAACCTTTTTT 39862 30 100.0 35 .............................. GAGGAAACGCTTGTCGGAAGTATTACAAGCGGAAA 39927 30 100.0 34 .............................. TAATGGAAAAGAATACAAAGATGCTTATGTAATG 39991 30 100.0 36 .............................. ATCTGTTCTATACGGTTGTCCTGTTTTTCTTTTGGT 40057 30 100.0 35 .............................. CATACTTACGATACCGATGAAATGTCAAAACTGAT 40122 30 100.0 34 .............................. GCTACAGAGGATTTGCGGAATGAGACACCGATGG 40186 30 100.0 35 .............................. GCATTAGCAATGTCAAATTCTACAGTCTTTTGGTC 40251 30 100.0 37 .............................. ACAAGGCTGAATCCGGGGCGAATATGGCAGTAACATC 40318 30 100.0 35 .............................. CTGAGGAAGTATTAGGTTCTCAGTGTGCGGATAAG 40383 30 100.0 34 .............................. GATTACAGAGCCGTGTTAGATATTCTTTGTGCTA 40447 30 100.0 34 .............................. TCCCGGAAGAAGCGGAAAAGGTAAAAGCTGTATT 40511 30 100.0 36 .............................. CAGAATCCTAAAAAATTCAACAAGAATCCTAAAAGG 40577 30 100.0 35 .............................. ACGCATAAAACATCAAAAAGTGATTTTGCCGTATT 40642 30 100.0 34 .............................. GACGAATTTACTATTGCTAACAATCCAGACATTC 40706 30 100.0 34 .............................. GCATTAATGCAAGTTTCGCATAGCCGAACCCCTG 40770 30 100.0 34 .............................. GACGAATTTACTATTGCTAACAATCCAGACATTC 40834 30 100.0 34 .............................. GCATTAATGCAAGTTTCGCATAGCCGAACCCCTG 40898 30 100.0 34 .............................. GACGAATTTACTATTGCTAACAATCCAGACATTC 40962 30 100.0 36 .............................. CAAGAGATACAGCAGAAGAATGCGAAGAAGAGTTTG 41028 30 100.0 35 .............................. TAGCTTCGTTTCCGCTTCATAGAATCCCCCTTCCC 41093 30 100.0 33 .............................. ACTGTCCGATCAGATATCCGGCTGTGAAATCCA 41156 30 100.0 35 .............................. GCCCGTACCACATCATGCAGTCCGGGAGATATTCT 41221 30 100.0 35 .............................. TCCTGTCAACAGCATTTCTGACAGCCTGTGTGTAT 41286 30 100.0 34 .............................. CTTCCATCGTATGTGTGGGTTCGACCGCCATAGG 41350 30 100.0 34 .............................. TCATATAAATTCATCTCGTCAAAAGCTCCGTTTG 41414 30 100.0 34 .............................. CCGCATTTATAAGGTCTACATTACTGCTGGCACT 41478 30 100.0 36 .............................. TATCAAGGTATGGCATATTCCATTTATCACAGATTT 41544 30 100.0 35 .............................. TGGTTCATAGTTCTCCTTTCCGTGATTCACACATT 41609 30 100.0 36 .............................. TATCAAGGTATGGCATATTCCATTTATCACAGATTT 41675 30 100.0 36 .............................. TTTCCATCCATCTCCATACCAAGACCGACTTTCACC 41741 30 100.0 36 .............................. CCGGCCAGACCATCCTCTTTGATGTTTGCATCATGC 41807 30 100.0 35 .............................. ATGATAATATCATCTTGGTTCTTCGCTTCGCTATA 41872 30 100.0 35 .............................. GAATACTACCGACGCGGCGATCCTGGCCCTGATCG 41937 30 100.0 37 .............................. CCCTTAGCGGTCTGTAATTTAACAGCTAGTTTTCCAA 42004 30 100.0 35 .............................. GACACAGGGAACGCTGTTGGAAGTCCCTGCATCCA 42069 30 100.0 34 .............................. AATCAAAAACGTTATTCTCCCATCTATTCAAATT 42133 30 100.0 36 .............................. GATGTGAGGTTGCTCGTAAATATTATGACGAGCAGT 42199 30 100.0 35 .............................. AACGGTATATCTTAGGACTGTGGTGTGTGGCCGAG 42264 30 100.0 35 .............................. TCCTGTCAACAGCATTTCTGACGGCTTGCGTGTAT 42329 30 100.0 33 .............................. CCGCTACTGATTTTATATGTATGAAAATTTTCT 42392 30 100.0 33 .............................. AGATTACAGGGAATAATGAACTGCAAAAGAGAT 42455 30 100.0 34 .............................. AAACAAGCGGCATTATAACCTCCATGCGCTAACT 42519 30 100.0 35 .............................. TTGCTTCCGCCTGTCCGGTCATGATTCCCAGATCA 42584 30 100.0 36 .............................. AAGGTTAGTTGATAAGATTTTAAAGAAATCGAAATT 42650 30 100.0 34 .............................. CACTATCAAGATATAATTTGTTTTCCTCTATTTG 42714 30 100.0 35 .............................. TATTATCGACTCCGCAAATATTACAAACCATTTTC 42779 30 100.0 36 .............................. AGCTTGAGCAGTCTCGGAGGAACAATTACCGGAACA 42845 30 100.0 34 .............................. CGTAAGAAAACAATTATAAAAAGACTTGCTAATG 42909 30 100.0 36 .............................. TAAAAGCAAATAAGACGCTACGCCGCTACTGCAAGA 42975 30 100.0 35 .............................. CGGCCTGATCTTTAAAAAGTCCGAGGCTGAGACCT 43040 30 100.0 36 .............................. AAGTGTGCGCTTATGAAAGAATCAAAGCCACTAACA 43106 30 100.0 33 .............................. ATATTCGGTGGTTGGTATTTTTATACGCATTTT 43169 29 90.0 0 ......................-.GT.... | ========== ====== ====== ====== ============================== ===================================== ================== 63 30 99.8 35 GATAAACAGTAACATGAGATGTATTGAAAT # Left flank : TCCGTTTTCATTGAAAGAAGGGATGTAATGAAAAGTAAGAAGCAGTTGAATTATAATTACGCATTCTTGTTTTATGATGTTGGTGAAAAAAGAGTACAAAAAGTGTTCAAGGTATGCAAGAAATATTTGACACATTTTCAAAAATCAGTTTTTCGAGGTGAAATGACTCCTTCGAAGTTTATTGAATTGCGTAGAGAATTGAATAAAGTTATTAATAAGGACGAGGATTTTGTATGTATCATAAAGTTAATGAATGATAATGTATTTGGTGAAGAAATATTAGGAAATGGAGAAAAAGATACAGGAGAGACGTTGATAATATAAATATTTTACCAGGTGTTATTTAAAGAAAATAAAAAAATTAGTTGTAAAATAAGGGAATATGTGTGATTATTATTTATAAAATAAAAATAGAGTATCGCCTGGTAAAAAGCTAGGAAAAGCTTGAAGATAGGGGATTTTAGATCCTCAGAAAAATGTAAAATGGCGTTAACTCGTTA # Right flank : TGATAAAATAAATATGTACATTTAGTGGAAAATAAAAATGTACAATCAAGGTTAGCATGCTATTGTATTCATGGAGGTGTTATCCATGAACGAAGCATTAAAGACTCAGCTCAAAATTCTCAAATTGAGTGATATAAAACCAAACTTTTCAGAACTTGCACGGTTTTATGATCTGGATCGCAGAACTGTCAAAAAGTATTATGACGGATATGAAGGCAAAGCTGCTCACAGAGATAAATCAAGCAAACTGGATAAACATTATGATCTCATCAAACAGAAACTTTCTATCAGAGGTGCGAATGTCCGCGCTGTGTATGAGTTCATTCTTTCTGAGAGGGATCCAAATATCGGTATCTTTGCTGATAGATAATAATATAAGATGTATTAAAATCGACGGAATAGATATAGAACGGGCGATTTGAGAACAGATAAACAGAAATCAAGGATATTTTGAAAATAGTTGTTAAGTAATATCGGAAACTAAAAAATAAAATATAAGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACAGTAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA //