Array 1 620-224 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAX01000199.1 Nocardiopsis halotolerans DSM 44410 contig_199, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 619 30 96.7 31 ...........A.................. CCCTAGGAGAGGGACATGGCGGACAACGTCA 558 30 100.0 31 .............................. CGTCGGCGAGGAGAGCGGCGGTGGGGCGCTG 497 30 93.3 30 ............................GG CCACAGGCTGGCGACCGAGGTCTCGGGGTC 436 30 86.7 31 .C..............T.......AT.... CCGCGATCACCGACATCCGGGGCACCCTCAG 375 30 83.3 32 ...........A....T........T..GC TGCCCCGTACCCACAAGGGGAAGACCGCCAAC 313 29 93.3 31 ...G-......................... CGTAACCGTCCGGGATATCGCGGCCCGGGTC 253 30 80.0 0 .........G...............TTGTC | ========== ====== ====== ====== ============================== ================================ ================== 7 30 90.5 31 GTGCTCCCCACGCACGCGGGGATGGCCCCA # Left flank : CCGCCGCGCACGGGGGCCGGTGGCCCGCCGTGGTGGCGGTGTTCCCGCCGGAGGTGCCGGTGTCGCGTCCGCAGGTGTACACGGCGCTGACCCGGGCCACACGGCACGTGTCGCTGGTGGACGCGACCGGTGGCGGCTTGGCGACGGGCGTGCGGGAGAACGCGGCGAAGGAGCGGACGACCCGCCTGGCGAGGGTCCTTCGGGAGGGGTAGGACCGTAGGTCAGGAAC # Right flank : CCACAGGCGGAGGCGGGGGCTTGGTGACGGGTGAGAAGGCCCGTCAGACTGGATTTGGGGGCGCGTGACACGCTCACGAGCGGCTCGGACGCCCCCGAAATCGAGCCTAGTCAGCCCGCCACGCCCCGCACCAGCGGTACTTCTCCCCTGTGGACAACCATCCGTCTCACCCCATGCGGGGACGGCCCCTCATGTCCCCGCGGTCTCGGACGGCTCCTCCAGCA # Questionable array : NO Score: 3.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGCGGGGATGGCCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12242-11197 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAX01000071.1 Nocardiopsis halotolerans DSM 44410 contig_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 12241 30 96.7 31 .............................C ACGGAAGCGTCGGTCACCTCGACGCTGTCCC 12180 30 96.7 31 .............................G CCAGTACGTGGGGTTGTGGTATAGGCGTTTC 12119 30 96.7 31 .............................C CGTCGGCGGTCGAGGCGCGCGCCGCCCGAGA 12058 30 96.7 31 .............................G CTCTGGTTGACGCCCCGCGTTGAAACCAGCG 11997 30 96.7 31 .............................T CCGCAAGGAGGCCGGGACGCTGCCCGCGACC 11936 30 96.7 31 .............................G CCGGGGCGCACTGTCAGAGGCCGCGCCCCGG 11875 30 100.0 31 .............................. GCGACCAGCACGGTGACCCCTGGTCGGCCGT 11814 30 100.0 31 .............................. GCGACCAGCACGGTGACCCCTGGTCGGCCGT 11753 30 100.0 31 .............................. GCGACCAGCACGGTGACCCCTGGTCGGCCGT 11692 30 100.0 31 .............................. GCGACCAGCACGGTGACCCCTGGTCGGCCGT 11631 30 100.0 31 .............................. GAATTCCAATCAGGGCGAGATAGGAAAAGGC 11570 30 66.7 5 .............C...AC.AGGTACA... AGCTT GATAG [11555] Deletion [11536] 11530 30 96.7 31 .............................G CTGGCCCCAGTACGACTGGACGGTGACCATC 11469 30 96.7 31 .............................C CACCCTGAACATGCTCGGGCCCGGAGCGCCC 11408 30 100.0 31 .............................. GCGACCAGCACGGTGACCCCTGGTCGGCCGT 11347 30 96.7 30 .............................C CTCGGGGTGGACCGGGAACCGGTGCGACCA 11287 30 96.7 31 .............................C GCGACAACCTCGTGGTGATCTGCGGCCCTCG 11226 30 96.7 0 ..........................T... | ========== ====== ====== ====== ============================== =============================== ================== 18 30 96.1 29 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : CCGGGGCGAGCTGCTGGAGTCGGGTTACAGCTACGCCGACGAGGTGGTCTGGTGACGGTCGTCGTCCTCACGAACTGCCCCGCCGGTCTGCGTGGGTTCCTGACCCGGTGGCTCATGGAGATATCGGCGGGGGTGTTCATCGGTAACCCGTCGCGCCGGATCAGGGAGGCGCTGTGGGCGGAGGTGAAGGAGTACGCGGGTAACGGGCGGGCGCTGCTGGCGTACAGCGACGGCTCGGAACAGGGGTTCACGTTCGAGACCTTCGAACACCACTGGGAGCCGGTGGACCATGAGGGGCTGACCCTCATGCATCGCCCCAGGAAGGTCGTTGAGGAGAACAGGCGCCCGCCGAAGAAGGGGTGGAGCAAAGCCTCGAAGAGGCGGCGCTTCGGTGGTAGGTGAGTGGTTTGGCTTCTTTGGGGGTTTTGGGGCTCGTGTCCGTCTTTGAAGAAGTTGGAAAAGTGGCTGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : ACGTCGAGGGCGTCGCCGGCATGTTCGAGGGGTGCTCCCCGCGCGCGGGGTGGTTGCCCACAGGGATGGATCAGAGGTTGGCGGTGGGCACCGGGCCAGGTCACACTGGATTCGGGGGCACATGATGCGCTTATGGGCGACGAAGAAGCCCCCGAATTCGAGCCTAAGCGGCCCGGTCCTCACCCCACCAGCTACATCTTTCTCCTGTGGGTGATTCCGGTCCCGCGCACGCAGGAGTGATTCGTTTCTACCCGTGAAGTTCATGGGGCTTCCGGGAGGCGTGTGATGCCCGGTGGTGTCGGGTAGGGGCTGGCCAAACGTCTAACAGGGAGGAGGCCGGACATGAGCGTTCCGGAGGAGTCCAGGCCCAAGACCTCGGACACTGACCAGGTCGTGAACGCTGACCACAGCGACGACGCCCGGGGCCCAGACACCCGGGAGGAGCTGGAGGCCGAACTCCAGGACAGGATGGAGGAGGAGAACCTCACCCGCGAGGACTT # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.13, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23868-23044 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAX01000090.1 Nocardiopsis halotolerans DSM 44410 contig_90, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 23867 30 96.7 31 .............................G CTCTTCACTCGTTTGGGTGGCCAACCATCCC 23806 30 100.0 31 .............................. CCGGCACCCGCGCCCTGGCCGACCGGCTGAC 23745 30 96.7 31 .............................T CTGTTGCCCTGTGTTCCTAGGCGCTCCTCTC 23684 30 100.0 31 .............................. CGAACGGGAACGCGGTGAACATGTCGACCTG 23623 30 96.7 31 .............................G CGCCCCGTAGGTCCTCCCACGGGGCGCGTTC 23562 30 96.7 31 .............................T CGGCGCGCCTTGGTGATGGCCACGGCCCCTC 23501 30 100.0 31 .............................. AGGGCTGAATACCGCTGAGGTTGTCCAGTGC 23440 30 96.7 31 .............................G GCCTTCACAGTCGGGCTCTCGGGCAGCTCTC 23379 30 96.7 31 .............................T GACCGGCTTTTTCATCTCGGTTTCAGGGGCC 23318 30 100.0 31 .............................. TGGCCCGGTAGTCGTCGCTCATCATGTCCTT 23257 30 96.7 32 .............................G ACACCAACAAGCTCTGGCACGAAACCTCCCGG 23195 30 100.0 31 .............................. GCGCCGGGGAGCGACTTGGGGGGAGAGGACT 23134 30 96.7 31 .............................T GCCGCCCCCACGAACGGCGCCTGTTCCGCCT 23073 30 93.3 0 ............................GG | ========== ====== ====== ====== ============================== ================================ ================== 14 30 97.6 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : ATGACGCATCCTATCCCTGACCCGCGTCCCTCCAGTGACCCGCTGTACCGAGTTCCGCCTCCGTTGCCCCGGCGCCGCCCGCTCGTCGGTCCATTCTGCCCGACCTGCGAGCACCCCTCCTGCCGCAGGCGCCGCGCTCAGCTGTTGCCCCGGCTCGGCGGTCACCTGGCTGAGTACCAGCGCGAACACGCTCTTGCTGCTGCTTTCCAGCGCCGCAATCCGCGCCTGGTGATCTGGTACGGGGAGAACACTGGTTCGTACTGGGTGGCTTCCTCCACTGGCCTGGCCGAGGTGCCCGACATCGGAACCCTTGCCCGCCTCCTGGATCCGGCACCCGTCCCGGTCGGCTGATCCACTACCGGTAGGGGCGCGGTGTGTGCCTCTACCGGTACTCTGCGGCCATGGTCTTCTGGAGGCTGAGCGTGCTGTCCGGTTTGTCTGTTTCTCAGGAAGTTGGAGAAAAGGCTGCTTGCCGCTGGTAAGTTCGCAGGTCGTTGACT # Right flank : CCGCAGCCAAACCCGTTGCAGTAAGGGCGATCCGTTCTGAAAAGCCCGCCCCTGGCGCGAACCCGGTGCGGGCGGCAGGTATCCCACCCCTTTGGCATCACACGCCATACGGAGTGCACCCGCCTCCCGAAGCACCACGGAAACGAACAGGAGACCCTCATGGAGCTCTCTCCCAACCACTCCCCCCTGTCACGGCGCGGCTTCGCCCACCTCGCCGTACTCGGGCTGGCCGCCGGGGCCGGTGTGCTCGGCTCCACTCCTGCCGCCGCCGCCAGCGACGGGCAGGTCTACTACGACCGCGCCAACCGTCTGGCTGGCCAGGACCCGGTCCTGCGGGCGATCGCCTCAGCTCTGCACCCCGACGTCGAGTTCCCCGGGGAACTTCCCGCCCCGCCCCCCACCAGGCTCTTCGACGACCTGGCCGTCCTCAGCGTGGGCTTCGTCCACGCCATGGCCCTGTTCACCTACGAGGGGATCGTCCTCTTCGACGCCCTGCGCTC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6812-6110 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAX01000072.1 Nocardiopsis halotolerans DSM 44410 contig_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 6811 30 96.7 31 .............................A TGGACGGGGAGAACTGGGTGATGTATTGACT 6750 30 90.0 31 .........................A..GG TGACGGGCAAGATCAACCCCATCTACGAGAG 6689 30 93.3 31 .........................A...C GGAAGGACTGGGTGAGGGTGAGTTCCACATC 6628 30 96.7 31 .............................G GGACGGGTGACAACTCCCGGTGGAACCCCGG 6567 30 96.7 31 .............................G CATCCACGGCCGCCTGAATCTTGGCGCTGAA 6506 30 100.0 31 .............................. ACGAGAAGGGGCAGTCCACCCGGGCCGCCGC 6445 30 96.7 31 .............................A TGGACGGGGAGAACTGGGTGATGTACGAATC 6384 30 96.7 31 .............................G CGGACCGGAACCCGGCCGAGGCGCGCACGAA 6323 30 96.7 31 .............................C CGACCGGTCGGCGGCCTACGATCTCACCGAC 6262 30 100.0 32 .............................. GTCCGCATGCCCGGTAAGCCCAAGCGCCCCCG 6200 30 100.0 31 .............................. TTGCAACCGGGTCCCTTGACGGGCGAGAACG 6139 30 93.3 0 ..........T................T.. | ========== ====== ====== ====== ============================== ================================ ================== 12 30 96.4 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : GTCAACGACAGCAGCCGGAAGCGGCTCAAGGTCGGGGACCTCCTGCGTTTCAAATGTCGCGGCGAGGAGGTTCTGACACGGATCACCCGCCTGATCCGGTACACCGACTTCGAGGACATGTTCGACCACGAGCCGGTTTCCTCTGTGAACCCGACTGCGACCCGGGAAGACCAGCTCCGTAACATCCGGGAGATCTACCCGCCCGAGCGCGAGGCCCTGGGCGTGGTTGCCATCGGTATCGAACTGGTAGCCCCACCCCCTTGAGGGTTGACTGCGTCACTGCTGTGGTCCGCATGACCTCAACTCGATGACCTTGCTGAGATTACTTGGTTCAGGGGGCTGCCGTGGAGATCCCCTGTAGGCAAGGGTGCAATGTGCGTTCCTGCCGATACTCTGCGGCCATGGTCTTCCGTGGGCTACATGCGCTGCCCGTTTTGTCTGTTTCTCAGGAAGTTGGAGAAACGGACGCTTGCCGCTGGTAAGTTCGCAGGTCGTTGACC # Right flank : CGTCAATACGGAGAGTCAGTGCCTGGCGGTAGTGTTCTCCGTACGCGGGGATGGTCCTGGTTGGAGGCTCGGCCTGGGATAAGTCTGAGTTTCACTCGATCAGCTTGTCAAAGACGAAGAATGCCCCGCCGAGGGTAGTGAGGGCCAGAGCAAGCGCAGCAGCTGGATGATCACCAGCGATCCAGCGGAGGACACCGATGGTGGCTCCAGCGAGCAGAGCAAGGAGAAAGATGAAGGCAGTGCGGGCCTTGACGCGGCTGTTCGGGGCCTCGTGGCTCGTGTTGTGGGGGGTCATGGATGCCTGGCGCTCGCTCTCTGGGACTGAGGAAGTTCGTCTGTAAAGTTTGTACGCACGTAGTGGTTGTTTTGATTTGGTTGGCCTGTGTGGAGCGTACCGTGGAAGCGTCGTCCGTGGGATGCTTTCGTGTGTTCCTCGCATGAGCGGGGATGGTCCCCACTAGGTGCGGACAGACAAGTGCTCCCAGCGTATGCCGGGATTT # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11400-10821 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAX01000072.1 Nocardiopsis halotolerans DSM 44410 contig_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 11399 30 100.0 31 .............................. CCGGGGGCTCCCCGAACATGAGCGAGTCAAG 11338 30 100.0 31 .............................. CCGGGGGCTCCCCGAACATGAGCGAGTCAAG 11277 30 100.0 31 .............................. GGTCTGGCGCGAGTGGGAGCGCGACACGAAG 11216 30 96.7 31 .............................C ACCAGGACGTGACCCCGAGGAGCCGCGCGAG 11155 30 96.7 31 .............................T CCCAGCGCCCCTCCTGCTCCCACACGGCCAG 11094 30 100.0 31 .............................. CCGGGGGCTCCCCGAACATGAGCGAGTCAAG 11033 30 93.3 31 ............................AC AGATGGTGTTCTTCTGGCGCGGGAAGCGCCA 10972 30 96.7 31 .............................A CGGTCGACTTCATGCTCCGCATCGTGTGGGG 10911 30 100.0 31 .............................. GCTTCGGCTCCAAGCAGGCCGGGCAGGTCGC 10850 30 90.0 0 ..........................TT.T | ========== ====== ====== ====== ============================== =============================== ================== 10 30 97.3 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CGAGCCGGAACGTGCCGAAGAGGTGGCGGCGTACCTGCGGAACTACGCGTGTCGCCAGCTCACGGTGGTGCTCACGCCCCGGTTGATGCAGTTGAGGCGGATGGTCATCGGTGAGGTCGCGCGGTTCCCCGAACTGGCGCGGGTGCTGTACGAGTGCGGGCCGCAGAGGGCGATTTCCGCACTGGCCGAGAGCTTCGCCCGGCTTGCCGACCGGGGTCTGCTCTCGCTGGAGGATCCCCTGCGGGCGGCGTCGCACTTCAACTGGTTGGTGATGTCGGAACCGGTGAACCGGGCTATGTTGCTGGGAGACGAGGCGATTCCGAGCGTCGAGGAGTTGTGCGCGCACGCGGATGAAGGTGTGAGGGTGTTCCTGGCGGCGTACGGAGTTGAGGGTGGTTAGAGGGTTTATGGGGTGTTTGGGGTCTGTGGTGCTGGTGTCTGTTTCTCAGGAAGTTGGAGAAACGGACGCTTGCCGCTGGTAAGTTCGCAGGTCGTTGACG # Right flank : CGTTAAGGACGTGCGGAGCCTTTTGCCTTCTCCTCGCCCAAACTTCCACGTTCGGTTCGGACATGGACCCAACTTGGGCCTGAGGGGTCTCGCAGCCACACCCGGTGCTCGCCGGTGATGTCGACAGTGAGCCCGTACTCGGTCAGGTCGGGACTCCCCTGAGCCCGCCACCATTCTCGGGCGGTGATGATCCGCTCACCGAGTCGATCCGGGCCGCCCTGCTCGACACGCCCGTCCGCGTACAGCCGTGCCCACGAAGGGGAGTCCACGGCCGAAAGCCACACACAGCTCCGCTCCTTACCGGGGAGGGGCTGGAAACCCATGGCGGTACCGGGATTCATCAAGGCCAGTTGCGGACCGGCGCCGTCCAACACCAGGTCGCGTGCGTCTCCAGTCAGGGTCCAGGTCCGATCGGCGATCGCGTCATGGTCAGGCGGTGCACCCCTTCGGCCCCTCTGGTCGCGCAGGCTCATGAAGTCGGCGTTACCAACAAACCGCCC # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 23492-22976 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAX01000072.1 Nocardiopsis halotolerans DSM 44410 contig_72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23491 29 96.6 32 ...T......................... AACGCCCCGGGGACGGCCGGGGCTTCCGCTAG 23430 29 96.6 32 ...T......................... TCCTCGAGGAGCTCCCTACACGCGCGAGGAGG 23369 29 96.6 32 ...........A................. CGCTCCCCCCGGTCGAGGAGGAGCACGACCAG 23308 29 96.6 32 ...........A................. GACCCGAGCTTGGGGCCGAACTTGGCCAACGC 23247 29 96.6 32 ...........A................. CGCCCGTCCCCCTCCCTGCTTTGGTGGTCGGG 23186 29 100.0 32 ............................. ACGATGTACACGGACGGGCGGCCGATCTTCGT 23125 29 100.0 31 ............................. CCCGCCTTCAGCAGGAAGGGCGATCGGAACG 23065 29 100.0 31 ............................. CCCGAGGGCGGCCCCGTGCGGGGGCCGGGGC 23005 29 89.7 0 ..........................GAT | T [22979] ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.0 32 GTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : TCTGGCGCGGTACGTCGCCGCGTTCGAGGCCTATGACATCCCGGCGATCACCGAGTTGTTCACCGCCGACGCGGTGTTCGAGATGCCGCCCTTCACCAGTTGGGTGCGCGGTGCCGAGCACATCGGTCGCCTGATCGCCACCCACTGCCCGGCCAGCGGGGCGGGCGACATGGCGATGGTGCCGACCGGGGCCAACGGGCAGCCAGCGTTCGCGCTGTACATGCGTGGTGGTGACGGCGTCCACCGGGCGTTCGGGATCCAGGTCCTGGAGCTGGCGCCCGGGGGAGCGGGGGTCGCCCACACGGTGATGTTCTTCGACACTACGCTCTTCCGGCACTTCGGGATGCCCGCTGTTCTGCCCCCGCGCCGCTGATGCGGTGGGTGTTGTGTGGCCCTGTGGGAAGTTTCAGGTGTTCTGGGGGATAAGGGGTTGGGTGTCTGTATTTCGAGAAGTTGGAAAAACGGCCACTTGCCGCTGGTAAGTTTGCTGGTCAGTGACT # Right flank : CGGGCGGGTCCGGCCCGGCAGCCCTAATCAACCCTGACCACGTACTTGCCCTGCACACCGCCCACCTCCAACGCACGGTGCGCCACCGCCGTTTCACGCAGCGAGAAGACAGTGTCCACCGACGGGCTCAGCTTTCCCTCGACCACGTGGCGAGCGAGGTCGTCGAGATCCTCTCGTCTGGGGTCGCCGCTGAAGAAGCGCACCCGGCCGTGTCCGTGGACCGCGCTGGCCATGACGTAGCCGAGTGACGCAGCGGGCCGCGCCAGGTCGAAGGCGATGGTGACCATGCGCCCGCCGGGGTTCAGCAGGTTCCGGAAGGCCCGCAGGTCGGTCCCCACGGTGTCCAGGACCACGTCGAAGCGGCCCAGCTCCCCCGGAGGGACGGACCGGTGGTCAACGGCCTTGTGAGCGCCGAGACCGCGGACGAAATCGAGGTTGGCGGCGCGGGCGAGGGCCGTTACCTCGGCTCCGTACGCCCGTCCGAGCTGCACGGCGGCGTT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : TCCCCGCACACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //