Array 1 8648-10934 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSWN01000012.1 Escherichia coli strain IM36c NODE_12_length_74895_cov_1.552803, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8648 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 8709 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 8770 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 8831 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 8892 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 8953 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 9014 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 9075 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 9136 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 9197 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 9258 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 9320 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 9381 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 9442 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 9503 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 9564 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 9625 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 9686 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 9747 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 9808 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 9869 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 9930 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 9991 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 10052 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 10113 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 10174 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 10235 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 10296 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 10357 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 10418 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 10479 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 10540 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 10601 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 10662 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 10723 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 10784 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 10845 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 10906 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17098-16947 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSWN01000093.1 Escherichia coli strain IM36c NODE_93_length_18251_cov_1.708784, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17097 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 17036 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 16975 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 3 29 98.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //