Array 1 109947-110180 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEGQ01000011.1 Bacillus pumilus strain DE0094 NODE_11_length_129572_cov_27.517449, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 109947 32 96.9 33 .............A.................. CGAACAAGCCTACTAGATAAAGGTGTCCGCTAG 110012 32 100.0 35 ................................ ACGTATGGTCAATTCAATTTGATAGAGCGGATCCG 110079 32 90.6 35 ...A........T......T............ AATGCCGTTGTTATGTTTTGGCGATCAGCAACCAT 110146 32 81.2 0 ..........C..G.....TT..A.......A | A,TT [110165,110172] ========== ====== ====== ====== ================================ =================================== ================== 4 32 92.2 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : CCTGAGACGGTAGGAGAAGCATTCAAAGTGGATGTGATGACACCACATCATTCAGACTACAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTTCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAAGCAGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGCGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGTCATTTCGTAAGACTAAGTGCGAATGTGAGGTGAACATAAAGTCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACTTAATTCCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : AACAATAGCAGCATCATACATCGTAATTGATATGAGTATCTAAATAAAGTCTATCGTGAGTAGGTACCTTGAAAGGAATATTGACAAATGCACTTCATATAAGTGTGAAAATCATAACTCTCGCATCTGATCCAGTAGTCATGTATTTAGTGAATTCAAAGTTGTTGCTGGAATAAGTATGATGAACAAGTTTCAATAGATTTAAATAAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCATTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATCGATGCCTTATCACATCTGCAACTTTGATATGTAGTCGCACTCTACATGAGTGCGTGGATTGAA # Questionable array : NO Score: 6.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 110584-110819 **** Predicted by CRISPRDetect 2.4 *** >NZ_VEGQ01000011.1 Bacillus pumilus strain DE0094 NODE_11_length_129572_cov_27.517449, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 110584 32 100.0 34 ................................ CGATGCCTTATCACATCTGCAACTTTGATATGTA 110650 32 100.0 36 ................................ CGCGATCACCTAACGTGATACGTTGCTGTGCTGTGG 110718 32 100.0 37 ................................ ACATCAAGCGTCAGCTGATAAGTTCGAGCAAGGTCAC 110787 32 90.6 0 ...................GA......A.... | T [110816] ========== ====== ====== ====== ================================ ===================================== ================== 4 32 97.7 36 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ACTCTACTTGAGTGTGTGGATTGAAATAATGCCGTTGTTATGTTTTGGCGATCAGCAACCATGTCGCACTCTCCAGGAGTGATTTGAATTTTGAAAAACAATAGCAGCATCATACATCGTAATTGATATGAGTATCTAAATAAAGTCTATCGTGAGTAGGTACCTTGAAAGGAATATTGACAAATGCACTTCATATAAGTGTGAAAATCATAACTCTCGCATCTGATCCAGTAGTCATGTATTTAGTGAATTCAAAGTTGTTGCTGGAATAAGTATGATGAACAAGTTTCAATAGATTTAAATAAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCATTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTGCGAAAACATAACTCTGCCTCCTGCCTCAGTAGTCATGAATCTAATTGAATTCAATTGTTGCTGAAATATAAAGAAGTATGATTAACAAGTTTCAATAGATTTCATACTAAGAAAAAGTCGGTGCGAATGTGAGGAGAACATAAAATCCCTGAAACATTCGCACCGTTTCATTCAATAAAATGAGAAAAAGTGTAAATTATTTAGAAGGGAAAACAAAATTCTATATAGAAACTTGGGTTTTGACGATCATTCCCTAAAAAATGTTATAATTGGGGCGGAAATCGCAGTCGCACTCTACATGAGTGTGTGGATTGAAATACGATGATGTTGTGGACGTCGGATGTAAGGCGGTGTGGCACTTTATATGAGTGCGTGGATTGAAATTTGTAAAACTTAGCATTGAATTTTGTGGCTGCCCATGCACTCTACATGAGTGCATGGATTGAAAGAAGTAAGATCATTAAAACAAACAGAATGAATTGCAGTCGCACTTTACA # Questionable array : NO Score: 8.75 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //