Array 1 852221-852968 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015566.1 Pasteurella multocida strain USDA-ARS-USMARC-60712 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 852221 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 852281 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 852341 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 852401 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 852461 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 852521 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 852581 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 852641 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 852701 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 852761 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 852821 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 852881 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 852941 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.4 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2078370-2075461 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP015566.1 Pasteurella multocida strain USDA-ARS-USMARC-60712 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2078369 28 100.0 32 ............................ GTGCTGCCACTTGGCTCGGCAGACGGCAAGTT 2078309 28 100.0 32 ............................ ACTGGTAGCGCGCCAATACTCTGTATTTTTCT 2078249 28 100.0 32 ............................ TCCATAAGGTCGCTTGTCGCAACCATTATTCT 2078189 28 100.0 32 ............................ TTATCCGTCACCTTCACCATGTCGTAATGCAC 2078129 28 100.0 32 ............................ GTCGGAGCTTAGGACGGGGGAGAGTATCGTGT 2078069 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 2078009 28 100.0 32 ............................ ATGACTGCCGCGCTTGATAATTGCAACAGCAA 2077949 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 2077889 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 2077829 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 2077769 28 100.0 32 ............................ AACAGCTCACCTTGGGGAACCACCTGAAAAAC 2077709 28 100.0 32 ............................ ATATCCTCACCGCTATAATGTGGTAAATCTAA 2077649 28 100.0 32 ............................ ACTACGGGAAATACCCAAATATCCTGCGGATT 2077589 28 100.0 32 ............................ ATATCCTCTACTGTTAATTAGTTGATTATTTA 2077529 28 100.0 32 ............................ GCGACCAATCAGGGACACTCGTATCACAGAAG 2077469 28 100.0 32 ............................ TGTTAGCTCACCGAAGCTACCCAGTGCACCAT 2077409 28 100.0 32 ............................ ACTACAAGCCAGCGACGACAGTTATAATTTTA 2077349 28 100.0 32 ............................ AAATTAATAAAATTGTTGTGCGATTGCGTGAG 2077289 28 100.0 32 ............................ ATTACCCCTACAAAACGCATAACATTGTTAAA 2077229 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 2077168 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 2077108 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 2077048 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 2076988 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 2076928 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 2076868 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 2076808 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 2076748 28 100.0 32 ............................ GATCGATATGTTTTTAAATACAGTTTGCGGAA 2076688 28 100.0 33 ............................ TTGATAGCCGTGAAAGCTACGATCACCTTTTTT 2076627 28 100.0 32 ............................ TTGTCACAAACGACATCTTTTGTCTCAACGGT 2076567 28 100.0 32 ............................ ACCCGCACTTGCTGTTTTATTCGCCCAGTTAA 2076507 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 2076447 28 100.0 32 ............................ TTTTTTACATCTGCCATTGCGCTTTCAAATTT 2076387 28 100.0 32 ............................ ACTTCCGCGAATTTCGTTAAAAAACGACCGCA 2076327 28 100.0 32 ............................ GCAACAAACGGTTATTACGAAGAAGAGATGGA 2076267 28 100.0 32 ............................ TTTGACAGCAGTCGAAGACGAAAGCGGCGATC 2076207 28 100.0 32 ............................ GAGCGTTATCGACCGTCGATGACAAAAGACAG 2076147 28 100.0 32 ............................ AATGATAGTTACTAACATTAAGCCGATTGCAC 2076087 28 100.0 32 ............................ TTGCCACACAATCGGTCGAGTGAGTTCATTTG 2076027 28 100.0 32 ............................ AGCTGATCAAAAGTTAAATTCTTGTCATCTTC 2075967 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 2075907 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 2075847 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 2075787 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 2075727 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 2075667 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 2075607 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 2075547 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 2075487 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 49 28 99.3 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //