Array 1 427920-430729 **** Predicted by CRISPRDetect 2.4 *** >NZ_DF970691.1 Pediococcus pentosaceus strain LP28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 427920 36 97.2 30 .................................C.. TAATCATTGTTGATAGTTGCTGCACTTACT 427986 36 97.2 30 .................................C.. ACAACGAGCGTTAGAACGTAACGTTAGACG 428052 36 97.2 30 .................................C.. CCGTGAACGTGATAAGAACGGTAATTTTAT 428118 36 97.2 30 .................................C.. TCATTTACCTTGTCTGATACTCTGTGCGTG 428184 36 97.2 30 .................................C.. TAAACCTAAGTACAAAAATCTTGATGATAT 428250 36 97.2 30 .................................C.. CGGCTAACAAGCTAACGTTTAAGCAGTTTG 428316 36 97.2 30 .................................C.. TTTGGCTGGATATTCCAGTAAGTCAATTCA 428382 36 97.2 30 .................................C.. AATTAATTACATAACCTTGTTTAACAAAGT 428448 36 97.2 30 .................................C.. TAACCGCCCAAATTTCCATTACCTTACCTT 428514 36 97.2 30 .................................C.. TCGCTTAAATAGTCAACTCGTTCTGGATTA 428580 36 97.2 30 .................................C.. ACCAAACGATGTAGTAAATTGGACAGATGG 428646 36 100.0 30 .................................... TCCATCTTCCCATACCATTCAAAAAATATC 428712 36 100.0 30 .................................... CGGCCAGGTTGTTTATTAAAAACTGTTCTG 428778 36 100.0 30 .................................... AATTCTTCAGGCGAAAATGACACGACCAAC 428844 36 100.0 30 .................................... CACTTAAGGAACATACTGAGAAGATAAAAG 428910 36 100.0 30 .................................... AATGAATAACCCTAGGGACCAGATAATTTG 428976 36 100.0 30 .................................... ACAAATTATGGTATTTTATATCCTAAGTTC 429042 36 100.0 30 .................................... TATATTTTTTATAAGAAGCACTAAAGGCTT 429108 36 100.0 30 .................................... TGGATTTATTAGTTATTGACGAAAACTATT 429174 36 100.0 30 .................................... ACTTGTCTTAAAACAACACTACCGTTATAT 429240 36 100.0 30 .................................... TAGCCTATTGTATGTGCTATCTGTTTTGTT 429306 36 100.0 30 .................................... GCTGGTTAAGCCTATGAATGATAAACAATA 429372 36 100.0 30 .................................... ACACCTACTGATTAGTGGCGTCGATTTATC 429438 36 100.0 30 .................................... TAAATCTGAGTACGAAGCACTTAGTGAGAT 429504 36 100.0 30 .................................... TAAATTGACGATTAACAGCCATTGTGAAGC 429570 36 100.0 30 .................................... CAAGAATTTAGCTAAATTGGTTAAGGATAT 429636 36 100.0 30 .................................... TTCGGATTTGAAAAATCCAGTCACGCTTGC 429702 36 100.0 30 .................................... AAATAATGCTCTTGCTTTACTACTCTTTAA 429768 36 100.0 30 .................................... ACACATCGTTCTTCTTTGCCACTTGATAGC 429834 36 100.0 30 .................................... TTAGCTACATCTAAAATACCCTCCGTATCG 429900 36 100.0 30 .................................... TACGGAAAACACAGGTATAAAGAGGAGCTT 429966 36 100.0 30 .................................... AGTAGACAATAACAAGGATTATGTAGTGGG 430032 36 100.0 30 .................................... GTTTTTAACCGTAACTAACACTGGACGATG 430098 36 100.0 30 .................................... ACAAGTTCCAGAGTACAAACAGTTCGTTTT 430164 36 100.0 30 .................................... TTTTGGGTTGAATAAAGATGATAACCATGT 430230 36 100.0 30 .................................... TAGAAGACATTTACACCACCTTTGAGGACG 430296 36 100.0 30 .................................... ATAAAAAGCCATGCAATCAGCATGACTTTG 430362 36 100.0 30 .................................... AGATATGACTGAAGAGCAAAAACAGGCTGT 430428 36 97.2 30 .............................T...... AAATTGGCATCTGTTAGCACTGCTAAAGAT 430494 36 100.0 30 .................................... ACGGAATAACCATTTCAGGCTTGTTCTGCT 430560 36 100.0 30 .................................... CTTCGGCGTGAATGACCAGACCTCAATATC 430626 36 100.0 30 .................................... GACGAGGAGGTGAACCAATTTGGATCAGGG 430692 36 86.1 0 ...........G..........G.....AA..T... | CC [430719] ========== ====== ====== ====== ==================================== ============================== ================== 43 36 98.9 30 GTTTCAGAAGAATGTTAAATCAATAAGTTCAAGTAC # Left flank : CAGAATTTAGTTTTAACAAAATATTTGCGCCAAATTGAAAAGTTATTTTTACGGTCTGTTACAGATGAACAGCAAAATAAAATTCATGATGAAATCAATCGTATATTTAACATAGTTTCCGAACAATTATTTTTACTAGATTTACCGATAGAAGTTAACTTTGATTTTGATCTTAAAAAGTTATTTAAATATTGCGGGATTCGATTTGATCCAATTTTAATTAGTAAACCATATGGTATAATTGAAACAATAATTAAAATTCATGAAACTAGTAATCTTGACTCGTGTATAGCGTTAACTAATGTAGCTCATTATTTAACGTCAGTCGAATTTGAAGAACTTAGCCAGTTAGTCAAAGAGACGAATCAAAAAATACTACTAATCGAATTCACAGAAATAGAAGAGCAGAGCTTCTATGGAAATGCTGAATTCTACTACATTGATACTGATTTTATTGATTGGCATAACTGAAACCATTATTTTTTTATGAGAAATTAACG # Right flank : CAAACTGTACCCCGCAACAGTTTAGCCAGCTGTTACAATTTTCCACAACTAGTTCGACAGTCCAAAATAACAAATTAAAAAGAATCATTTTTAGCCACTAATACTTAGTGAAACTAAAATGATTCTTTTTGTTATTTAATTACTAACGGTAAAATAACGACCGAATTCATTAAAATATGAGCAATCATCGAAGTTTGAATACGTCCGGTCTTTTTGTACAACCAGCAGAATAGCAAACCAATGGCCGCATATAGAAAGATGTGACTATCGTTGTGCATAAATGCAAATGCTAGACTAGAAATGATGGCCATGACGGTGAATCCCAGCGTGGAATCAGCTCCAAACATCGCACTGAGGTTACCAAATAAAACTTTTCTAAAAACCAACTCTTCCATGATTGGAGCTCCCACGGTGATCGCTAAAATGAAAAATGGATTGGTTTTAGCCAAAGTCACCAAGGTTGCGGTGTTTTGAGAAGTAGGATTACTTCCAAAAATGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGAATGTTAAATCAATAAGTTCAAGTAC # Alternate repeat : GTTTCAGAAGAATGTTAAATCAATAAGTTCAAGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 594648-594946 **** Predicted by CRISPRDetect 2.4 *** >NZ_DF970691.1 Pediococcus pentosaceus strain LP28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 594648 36 100.0 30 .................................... TACTGGAGACGTTGATGAAAATGAACGTAG 594714 36 100.0 30 .................................... AGAGCAAAGTAAGCGAAAAACAAAAACAAA 594780 36 100.0 30 .................................... CAACTACAGAGAATAGCTCTTTGGAACTCA 594846 36 94.4 29 ...T..........C..................... TTAGCTATCATAACCTAGTGCAGTCAGGT 594911 36 88.9 0 ........G....C................CA.... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.7 30 GTTCGTGAAGTATGTAAAATGACATACCATTGAACC # Left flank : TAGATTGCAGTGGATATCTACAGAGACAGTAAAGCAATATGATGTAATTGTGATTGAGGATTTATCCACTAAGAACATGTTAGAAAATCATCGTTTAGCGAAAGCTATTAGTAAACAAGGGTGGAGAGTCTTCAGAGATATGCTACAATACAAGTGCGATCAATATGGTAAGCAATTGGTCGTAATCAATCCATACAAAACATCTCAAATTTGTCCTAACTGTGGTTATGATGATGGGAAACACTCATTAAATATCCGAGAGTGGATATGTCCAAGCTGTGGAATTACGCATGATAGAGACGTAGCTGGCGCTCAAATGATTTTAAAAAAGGATTAGAAAAACTAAATAAATAAAAAATAGAATCGGCAGGGTCAACTGCCTTGGTAAAGAGTTGTGACCGCTGAACATACCAATATATTATATTGATTTTCAAGTTTGCAATGTTCCCAGAAGGATGTCATTGAACTTCACAACATTAGATTTTGATGATAAAAGGTCG # Right flank : CGAAATAACCTACTATTGAACCCCCATGTTATAGGTGTGAGGGTGTGGGTATGAATAAACAATATTGGCAGAGGAATTATTGAAATTGAGAAAGTTAACTAAAGAAGATATTATAAATTTAGAATCAGGCCTACTGAGTGGAGAATATGAAATATTGGGTAAATATGTAAATACCCCCACTTCAAGCGTTAAGCCGAAGGCTTAGCTAAGTGGGAGTAGTTCAACTAATTAGGTAATAATGAGGGCTGTCGTGTTGCTGTTAGGTTACTTGTGTAGTTGTCTATGTCTGTTAGTATTATTGTTCATATAGCGTCATATGCTATTATATGGACGTATAGCGCACATTAGCATATGTGCATATAACTGTACATACACCACACTAATATTTATATATGCGCTTATATGTGCGTTAGATTGGTTGTGTGTGGTTATTGGTAGGCTTGTGCGGTGTCTATGGTGTGGCTGTTGTTTGCTATGGATCTGTTAGGTTGTAAGATTAT # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTGAAGTATGTAAAATGACATACCATTGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //