Array 1 72491-76364 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYTY01000001.1 Nitrincola alkalisediminis strain JCM 19317 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 72491 29 100.0 32 ............................. TTGAGCTTTCACCCAAGCTATTACGTGACCAT 72552 29 100.0 32 ............................. CGAAATAACTTTCCAAAAAAAGGTATAGGTAT 72613 29 100.0 32 ............................. AAACCGATGCCGTAGCCTGTCGCAAATAACAG 72674 29 100.0 32 ............................. GTAGAAGAAGTGCCAGAACAACCAATGCAAGA 72735 29 100.0 32 ............................. GTTTATGTTGGCACATCATCACCACGTAGATA 72796 29 100.0 32 ............................. CGTTTCGGCAACAAGATCTAACACAGAGATCA 72857 29 100.0 32 ............................. TCAACTCGCTTTTTTCCTTTCTATGTTTGAAA 72918 29 100.0 32 ............................. CGCCTTCAGCTCTGCTATATGCCGCTTGAATG 72979 29 100.0 32 ............................. TTGTGCTCCGTCAAATGGAGCTAAGAGAGAAG 73040 29 100.0 32 ............................. CTCTGCCGCTGCAAGTTGAGTTGACAGCCCCA 73101 29 100.0 32 ............................. TGCATGGGTATCAATTCAGGATACGTTGCCAA 73162 29 100.0 32 ............................. TACCGGAGCAATTCAAATCAGCTTGAGAAACA 73223 29 100.0 32 ............................. GAATCGGAACAAATTTCAGTTTGCGAGTATCA 73284 29 100.0 32 ............................. GTCTTGAACTGGACGTGAACAGGGTTCCGTTT 73345 29 100.0 32 ............................. TTGAAGACTTTGAAATCAATGGGATGGCTCTT 73406 29 100.0 32 ............................. TCTAGTAAATTATTGAAAAAATGGTTGCACTA 73467 29 100.0 32 ............................. GGCCAGTTCTAACACGGAGTCGGCGAGAGACA 73528 29 100.0 32 ............................. CCGCGCACACAGATCGACCATGTGATCGGGGA 73589 29 100.0 32 ............................. AGGAGCAGCTAGCCGTCTATTACGACATGGTG 73650 29 100.0 32 ............................. CAGACATCGGAGACGCTTTTGTGCATAGGCTC 73711 29 100.0 32 ............................. TCCGACATGCGTTGTCGGATACGTTCTCCAAT 73772 29 100.0 32 ............................. CGTTATTAGATGGCAGATTATTTCAGCGTCGA 73833 29 100.0 32 ............................. CCGTTATTTTTGGCGAGTATGATGCGGGTATT 73894 29 100.0 32 ............................. GCGGTAAAATGCCAGTAGACACTGGCTTTCTG 73955 29 100.0 32 ............................. CACAAACAACGGTACACAGCCATCCGCACCGT 74016 29 100.0 32 ............................. GTGAAGAACGCTCCATTCCACGCAGCCCGGAC 74077 29 100.0 32 ............................. CCTGACTCAATACCTGGTACAGCTCTTTGTTT 74138 29 100.0 32 ............................. GATCGGTATGTAGTGATGCGTGACTTTGACGG 74199 29 96.6 32 ............................T TTCTTCTAATTGTAAATGTTCAATAACCGAAA 74260 29 100.0 32 ............................. CGATATTTTACTGCAGCAGCAGGACGTTCGGA 74321 29 100.0 32 ............................. ACTTATCATAACGCCAAACAGTTTGATCACAC 74382 29 100.0 32 ............................. ACCTTGATTATAAACCCCAGCGTTTTGCTCGG 74443 29 100.0 32 ............................. GCGATTCAAAATATTCATATATGGCCCTGACT 74504 29 100.0 32 ............................. TTCGTCAAAAACCCAGCCCAAACCAACTAGTA 74565 29 100.0 32 ............................. GGACATATGAGCAATCAGTAATTGCACCATCG 74626 29 100.0 32 ............................. CAGGTTCTGTCAACGCTGCGCGCGCGCATTCA 74687 29 100.0 32 ............................. TACATTGAAACTTATGAGCACATACCTGACTT 74748 29 100.0 32 ............................. GCAATTCCAAAGGCTTCTGGTGAGAAACCTCC 74809 29 100.0 32 ............................. GCAGCCCTGCAGCGTGCAGAATGGGAGCGAAC 74870 29 100.0 32 ............................. ACCCCTGGCCGACACTCTGCGAGCGATTAACG 74931 29 100.0 32 ............................. CGCTTTCCTTTTCTTGCCTTAAGAAAGGCAGA 74992 29 100.0 32 ............................. CAACACCCCTTCTCTTTGCCGATCTAGATACC 75053 29 100.0 32 ............................. CCTGGATCAATGCCTAGCGGTATTTGACGGAC 75114 29 100.0 32 ............................. CTTGCATATCATAGATTTTTTTCAAATAGTCG 75175 29 100.0 32 ............................. CTAAAAAACGCGAAGGCGACCAATCGTGAGCG 75236 29 100.0 32 ............................. TGACATTAGCGGTGCAAGACTTGGCCGGTATT 75297 29 100.0 32 ............................. TTAAAGGAGGCTATCGCCTCCTGCGCTATCCA 75358 29 100.0 32 ............................. GAGTTACCAGTTCAGAATCAACCAACGAGATA 75419 29 100.0 32 ............................. CTCCAATTCCTCATTGCATAATATTTGATTTG 75480 29 100.0 32 ............................. CCATCTAATAAACTCAATTAGGTCTTCGTATA 75541 29 100.0 32 ............................. ACAAACTGTACTGTAGATGGGAATGTAATAAT 75602 29 100.0 32 ............................. AGCGCACAACGAAGAGTTGCAACGCTATAATC 75663 29 100.0 32 ............................. TCATGAATCTCACCCGTTTCCATATCCATGAT 75724 29 100.0 32 ............................. CGGACTCGAACCGCTGACCCCCGAGATTGCAA 75785 29 100.0 32 ............................. TTGCACTTTATCTAAGCACTCCGCTGTATCAT 75846 29 100.0 32 ............................. AAATGAGTTCATAAGAGAGGCGATCCATGAGT 75907 29 100.0 32 ............................. TTCCCTAAAAATAAAAATAAATATTAAATATT 75968 29 100.0 32 ............................. CTGTTATGGATTCAGCCCCGCCAGGTGTTGGA 76029 29 100.0 32 ............................. CGTCTAGGTAGATCGCCAGACATAGCCGACGC 76090 29 100.0 32 ............................. TCCTAAGGATTTTGCTGCGAACGCGATGATGG 76151 29 100.0 32 ............................. TTCGGCATCTCTGCAATGACCTATCCACTGGA 76212 29 100.0 32 ............................. TTTTACAGTTATCGCATACGTGCCAACGTTTA 76273 29 100.0 32 ............................. CCTGCAATAGAGCTGGTTTTCTAGTTTTTAGC 76334 29 86.2 0 ....................C.....ATT | C,C [76353,76358] ========== ====== ====== ====== ============================= ================================ ================== 64 29 99.7 32 CTGTTCCCCGTAGGCACGGGGATTAACCG # Left flank : AGAGGTTTTGGCAGCAGGTGAGATCACACCACCTGAGCCTTATTCAGATGCGCAACCACCAGCGTTACCTGAGCCACTTTCAATCGGTGATGCGGGACATAGGAGTGGTTGAATATGAGTATGTGCATGATTGTGACCGAAGCGGTGCCACCTAGATTGAGAGGTCGTTTAGCGATATGGCTGCTGGAAATCAGGGCGGGTGTCTATGTCGGCGATGTGAGTAAACGAATCAGAGAAATGCTCTGGGAGCAGGTATCTGTTATGGCAGAAGACGGTAATGTGGTGATGGCTTGGGCAACTAATACAGAGTCTGGATTTGACTTTGTAACCTATGGTCAGAGCCGACGAGAACCAATTGATTTTGATGGTTTAAGGCTGGTCACATTCTTACCATTGCAAAATGAAAATTAGAGCCTAATAACGCTCTTTAACAATATGGAATATTTGGTAGAAAAATGCATATGCTTTTTTCTTCATTAAATCAACTATATACTTTTAGT # Right flank : TGATTTCTGCAAGTTAAAAAACGCACAAGGGCGATAGAAGAAGCTCAAAGTATGAGTCAGTGATAGCAATGGGCATAGACACCATACTAGTGAATTTTATAATCTAGGTGCTGTGTAGAATCTATGCAGGGGGAAGGCCCCCGAGGGCTATCCAATGACCTTGCTGATGGTATACAGGCGCAGCGACTATGCTGCACACCGCAAGCTTTTATCCAGAACAGTCTATATTAGCTTCCTCTCAACCTTCATCCGAATACACACAGACATTCCAATCGGCCGCTAATCCATCTTCAGCTAAACAATAGCGCTCAAAAAAACCGCTGATCTCATCGCGTTGGCAGTGGGTTTCGAAGCTTTGCATGTCTTGCCAGATTTCATGGAAAACGATGGGAAAGCTTGTGCCTTCTGCAAATGGGCTTTGGATGTGTTTCGTGACAATGTATTGAATGCAACCATCTTCCCTGAGGGTGTTGGGTTCCAGAGATTGTAAAACTTTGAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGTAGGCACGGGGATTAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 349025-351309 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYTY01000001.1 Nitrincola alkalisediminis strain JCM 19317 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 349025 32 100.0 35 ................................ TCTTTCATTGCGCGGTGCTTGCCGTGAAACACCGT 349092 32 100.0 34 ................................ ATCAGCTAACAGTACACGGATCGGACGTGATGCA 349158 32 100.0 36 ................................ AACAAGGCGCGATTGGCTGAGAAAACCTTTCAGGCC 349226 32 100.0 37 ................................ ATCTTGATTTACTGAATTAGAAGTTACTAAATACTCA 349295 32 100.0 36 ................................ CGTGGTTCTCAGCAAATTTATGATGCTGCCAACGGA 349363 32 100.0 35 ................................ AAGCCATGACTTGGGCGGTCGATCAGGAGTTGCCC 349430 32 100.0 33 ................................ GGTACAGCTCCTGTGCATCTAACTAGCGATCCG 349495 32 100.0 36 ................................ ACAGCAGATTTGGGATGACTGGGTAAGGCAGCGCAA 349563 32 100.0 34 ................................ CTACTGATGAGGTGACAAAGTACAGCGATGCCCC 349629 32 100.0 34 ................................ AGTTCAACTCGCTTTGCACCTGCCGCAATCATGC 349695 32 100.0 33 ................................ AATGAGTTTCATCTTTTCGTGCCTTTGATTCTC 349760 32 100.0 34 ................................ TCGCGCATGATCTTTGTCTGGATTTAACGCCAGT 349826 32 100.0 35 ................................ TGTGTGGCCTGTTCAGCCCTGTAAACTCAGAGCAG 349893 32 100.0 35 ................................ GATGTGATTGACAATAGTCACGGGCATCACTTACT 349960 32 100.0 34 ................................ CAGATCCCGCAAACCCTACCTGACGCACTGCGCC 350026 32 100.0 34 ................................ ATCGGTAGAATCATCTTCAGAAAGATTGCTGTGA 350092 32 100.0 34 ................................ ATTGGATTGTTTGTGATCGCGTCATTTTCTGAAA 350158 32 100.0 33 ................................ TTGCTTACGTTGCAAGCGTAAGGGTGGCGGCGG 350223 32 100.0 34 ................................ CGTTAACAGGGTCCGAGAAATAACTTAAATAGCC 350289 32 100.0 34 ................................ ATTTCTAAGCTAAATTTATCAACGGCTAGGTCGT 350355 32 100.0 34 ................................ ATTTCTAAGCTAAATTTATCAACGGCTAGGTCGT 350421 32 100.0 33 ................................ AATTAATCCTGTATTTTTCACGATCCTGAGCGC 350486 32 100.0 35 ................................ ATACCTCTGGAAGGCTATCACGTAAACACTACCGA 350553 32 100.0 34 ................................ TGGGCGTCGCCGTTGAATAATCGCTCGGCTGCCC 350619 32 100.0 33 ................................ ATCGGCGGCTGGTGTTTCGGTTGAGCAAACGGC 350684 32 100.0 33 ................................ CAGACATGCGCAATCTGAGAAACCCTTGGAACG 350749 32 100.0 37 ................................ TGCCAATGAGTTGCTCAGCCATTGCGCGACTAAGCTC 350818 32 100.0 34 ................................ AGATGTTGCGTATCCACACGTTACATATTGTGAA 350884 32 100.0 34 ................................ ATAAAAACCTCTTGTTGAATGTAAATTATACAGA 350950 32 100.0 33 ................................ TGTGCAGATTGAACGAAGGGCAGTGGCTCAACA 351015 32 100.0 35 ................................ ATTTTTGCCTTGCTGCTTATTGCCGTAATAAGCCG 351082 32 100.0 33 ................................ CAGCCGCCGCTCCCGTGGCGATACCCGCGACCG 351147 32 100.0 34 ................................ TGTCTCGCGAGGAATCCGAGGGCGTGGTGAACGG 351213 32 100.0 33 ................................ TCCGGTCGTACGTACGGCGGGGAAGCCTTGGCT 351278 32 96.9 0 ....................A........... | ========== ====== ====== ====== ================================ ===================================== ================== 35 32 99.9 34 GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Left flank : TGGCTCGATAAAACATTTAAAGGAGTTCAAAATGTTGGTGTTGGTTACGTATGATGTATCCTTTGATGATCCAAATGGACCAGCAAGGCTTAGAAGGATTGCCAAAATATGCGAAGACTTCGGTACGCGAGTCCAATACTCTGTTTTTGAGTGTGATTTAGAGCCTGATCAGTGGGTGAGACTAAAAGCTCGACTACTGGATACTTACGATGAAGCAGTGGATAGTTTGCGTTTTTATATGCTTGGTAAAAACTGGCGTAGAAAAATCGAACATCATGGTGCGAAGGCTGCTCTTGATTTGTTTAAGTCCCCCTTAATTATTTAAGCGCTAACCTCTAGTTCTCATAAATTAGCCGCTAGGTTAGCGTTTAGTTAATTATATGATATTTATGTGTTTTTTAGACCTTCTGTGTTTTGTTAATCAACTTAATTAGAGCTTCACTGGTGTTAGCGTAAATATCCGCTATAGGATATGATTTACGTGTCTTTGAGAGAAGGCA # Right flank : CCAGGCATTACCATCAGGATCAGTTTCGTTGTCAAAGTGTTCTCGAGTCCGCTCATGCAAGTACTCGGCAATCTCTGACATCATAGGTCGAGTGTTTTTAACCGCCTTGAAAAGCCTTTCCAATGCCGCTTGAACTTCTATGTCGTCGCAGTCGACGCGGATACTGCTATTTGATCCGGTCATGATTAGCTCCTATACTTCTAATTGCTGCAGGTCTATAGCACTCCGAGGTGCGCCCAAAGAGCCTGCGCGGGGTGGAACGGCGGGGCGATCCACCCTCACTATTCCTCTCGTCTGTATAGCAAAATCCCTTCCCGCTGACTTTCCATGTACGCTTCACGATTAAGCAAAACCTGCCCTTTGTTCACTCGCTTGGGCGTAAAGGCTGTATTACCTGACCACGCGCCCTGACCAAAAAGCACAACAAGCCCCGTACTTTTAGTGTGGGGAAGGATAGCGCTGGGAGGCGGCAGCCTCCCTTAATGTGGTCGGGTTTGCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTCACGCAGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //