Array 1 7280109-7280276 **** Predicted by CRISPRDetect 2.4 *** >NZ_NETK01000001.1 Nannocystis exedens strain DSM 71 utg0, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 7280109 32 100.0 37 ................................ TGAGGCGGAGAGCAGACTCGGTGCCCGGTCGCGCCGA 7280178 32 96.9 35 ..............T................. CGCGGTCGAAGCGACGCGCGCGAAGGGCGAGTCCG 7280245 32 96.9 0 ...........................A.... | ========== ====== ====== ====== ================================ ===================================== ================== 3 32 97.9 36 TGGCGAGCTGTCCCGAGGAGCAGGTCGGTGCT # Left flank : CGAGGACGCGCAGCGGCTCGGCGACACGCCGTACGCGCGGGCGAAGATCCGCGGCGAGGACGAGGTCCGCGCGGCGGCGGCCCGGCTCGGGCTCGAGGCGATCGTCGTCCGGCCCGGGGTGGTCTACGGGCCGGGTCAGCGCCCGGGCATGCTGATCCCGTCGCTGCTGGCGGCCCTGCGCGCCGGCCAGCGGTTCGCCTGCACGCCCGGCGAGCAGACCCGCGACTTCGTCCACGTGGGCGACGTGGGGCGCCTGCTGGCCCGCTGCACGGAGGACGGGGCGCCGGCGGGGGTCTACAACGCGGGCACGGGGGTCGAGTCGGCGGTGGCGATGGTGGTGCGCGCGCTGGCGTGGCGGCTCGGCCGCACGGACCTGGTCGACCTCGGCGCGCTGCCGTACCGCGGCAGCGAGGTGATGCGCTACGTGCTCGACCCGACCCGCGCGAAGGAGCGGCTCGGCTTCGTCGCCCAGGTCGCGCTCGCCGACGGGCTCGAGTCGG # Right flank : TTGAGGTCGAGGCGCGGTGGCTGCGGGCGCGGCTGCAGGAGTTCTCCGACGCCGAGCTGTCGCCCTTATTAAACCTCGGCAGCAGCGACCTGCACTTTCGCACGGTCGTGCAGCCGTGGATCGACCGCGAGGTGTTCGCGCCGCTGCGGGCGCGCGGGGCGGCGATCGTCCACAGCGACCTGAAGACGCTGCCGGGGGTCGACATCGCCGCGGACGCGCTGAGCGAGGAGGGGCTCGCGCGGCTGCAGGCGGTCGGGGCGCGGGCGATCCTGTGCTGCAACATGCTCGAGCACGTGACCGACCGCGCGGCGCTGGCGGGGCGCCTGGCGGCCCTGGTGCCCGCCGGCGGGCTGCTGATCGTCACGGTGCCGTTCAGCTACCCGTACCACCCCGACCCGATCGACACGTACTATCGACCTGCCCCCCAGGACATGTCCCGCGAGCTGTTTCCGGCGCTGCGGCTGGTCCGCGCCGAGATCGTCGACGGGCCGACCTACGCG # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGGCGAGCTGTCCCGAGGAGCAGGTCGGTGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.30,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 9765289-9764227 **** Predicted by CRISPRDetect 2.4 *** >NZ_NETK01000001.1 Nannocystis exedens strain DSM 71 utg0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================== ================== 9765288 36 94.4 37 GG.................................. AGGATGACGCTCGAGTTCGCGGTGCCCGACGCCTTCA 9765215 36 100.0 36 .................................... GCGCGCAGCGGCAACGGCGATCTGTCGGTGATTGCG 9765143 36 97.2 34 ..................C................. GCCGCATCCTCGCCCTCACCGCGCTGGCGCTCGC 9765073 36 100.0 34 .................................... ACGGTCGGGTGCGGGTTCCGGCCGCCCTCGCCCC 9765003 36 100.0 36 .................................... GTCACGCCGGTGACCGCCCTCGGCGACGACGCGTCG 9764931 36 100.0 54 .................................... GACGACGGCCTGTCGTGGCGCCAACGCAACGGCCACGGCGTCGATGCGATCGCC 9764841 36 100.0 38 .................................... GACGACGGCCTGTCGTGGCCCCTGGTCGTCGTGGAGGA 9764767 35 97.2 39 .....-.............................. CCCAACAAGCTGGTGCCCGCCAGTCCGGAATCCGCCGCG 9764693 36 100.0 35 .................................... GTCGAGGCGCCGGTGGTGCGTGTCGGTGCTCACGC 9764622 36 100.0 34 .................................... GCCCACAGCGCCGCGAACACCGGCGCAGCATCGC 9764552 36 100.0 37 .................................... TTGAAGTCCGCCCGGTTTGCCGTCCGGACCCCGCCGA 9764479 36 100.0 36 .................................... AGCGCTGCGGAAACTCGACGCCGCTGTGCGAGCAGC 9764407 36 94.4 37 ......................AA............ CGGGAGGCCCAGGCCAAGGCGCGCTTCAGGCGGTCGC 9764334 36 100.0 35 .................................... TCCATCGACCGCTTCGAGGTGAGGAGCGTGCGCAC 9764263 36 97.2 0 ................................T... | T [9764230] ========== ====== ====== ====== ==================================== ====================================================== ================== 15 36 98.7 37 CTCGCCGCCTCGATCTCGAGGCGGACCCGTTGAAGC # Left flank : GGCGGACCCGTTGAAGCTCGGCCCGGACGCCGAACCTTTGAACTGCCACCTCGCCGCCTCGATCTCGAGGCGGACCCGTTGTTGTCGCCGGTCGCAAACCGCGCGAATTCGCCGATGCACTTCGCCGACATACATCGCCGACACGTTTCGCCGACAAATTTTGCCGACGCATCTCGCCGGCGCATCTCGCCGGCGCATCTCGCCGACGCGTTTCGCCGCGCCTGTTTTCGCCGGCCAGCGCGCGCGCCGAGGCCGGCGCCCCGCGGGGCGCCGGCCTGAGCGATGTGGTGCTGGTTACTCCGCGGCGACGGCGTTGGCGCGCTGCGAGCGGCGAGAGCGGCGGTCCTTGGCCTCTTTGAGGCGATAGGAGTCGCCGGCGATCTCGACGATCTCGGCGTGGTGACAGAGACGATCGACCAGCGTGCCGACGCAGGTGGCATTGGGGAAGATCGCGCTCCATTCGCTAAATGGCCGATTGGTGGTCACGACAGTGGAGACCC # Right flank : GCCGGCCAGAATCCGCGTGAATTCGCCGACGAGACATGCCGTCGGTGTCGCAGCGGCTCGGCGGCTCCTGCCTGATGGGTAAGCCAGCCAACCAAACGGGCCGAGGGTGAACCAGGCCAGCTGGTCCTTGAGTTGAATTCGCGGACGGGAACGGCGCTGCGGGTAGAGAGGTGCTGCCGTCAAGAAAAGGGTGAGCGCTGCGGTGTGTGGCAGCCCGCAGCGCTCGGTGTCGAAGATGACCCTAAGGTCAGGCGATGATCGACGGGTGAAGGTACCGCGGCGATCTCAGGAAGGCAAGTGGATGTCGACGGCGGAGTGGCGACGCCATCGACGACGAGGGGGGATTCCGAGCATTTCTGTGCGGGCGGTGCCGACAGCTCGTCGTGCTGTGCCGCCGGTGTGATCGAGGTGACCTGTACTGTGGGCCAGTTTGTGCCGAGGCGCAGCGGCGGGAGTCACTGCGCCTGGCCGGTCGTCGATACCAACAAATTACCGCTGGG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCCGCCTCGATCTCGAGGCGGACCCGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-13.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 9767395-9765704 **** Predicted by CRISPRDetect 2.4 *** >NZ_NETK01000001.1 Nannocystis exedens strain DSM 71 utg0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 9767394 36 100.0 37 .................................... TCGCCGGGCGGCGCGCAAGAGGAGGGCCAAGTATGAG 9767321 36 100.0 36 .................................... GACTTCAAGAGCACGCAGGCCGAGGTGCTTACCCCG 9767249 36 100.0 37 .................................... TCGAGCGTCTCGCGCGGGCCGAGCAGCCCGAGACGGC 9767176 36 100.0 35 .................................... AGTTGCCCCGCGCCCGCTCCGCGGCCGCGGCTGCC 9767105 36 100.0 35 .................................... ACCTCGTAGCACCGGTACCTGATGACGCGTGGCAC 9767034 36 100.0 35 .................................... GAACACGAGCCCGGCGTCGGGGCTGCCGTCGTAGC 9766963 36 100.0 35 .................................... GTCTCGGCGGCCGCGTTCGGGACGAACACCTTCCC 9766892 36 100.0 35 .................................... TGCAGGCACAGCGAACCCTCGGGCTCCTGCAGGCA 9766821 36 100.0 34 .................................... GGTTCCGTCGCCGCAACCCGGCCTTCGAACTCGG 9766751 36 100.0 37 .................................... AGGCAGGGTAGGACCAGGTTCCCCGCGACGCTGCCGT 9766678 36 100.0 35 .................................... CATCCGCCGACCCGTGGGTCGTCGTCGGCACCACG 9766607 36 100.0 38 .................................... TTCTTTTGGCGGCGCTGGTAGGGCACGCCGTTGTGCTC 9766533 36 100.0 35 .................................... TAGTGCGGCGTCGTGCTTCTCCTCCATCTGGGCGT 9766462 36 100.0 37 .................................... TTTTTGTTCACTTCGACTATTCCGCAGGAAGCGCGGC 9766389 36 100.0 35 .................................... GTGGCGCTGGCCGTACCGCGCGGACAACGTCACGA 9766318 36 100.0 35 .................................... TGTACCAGCGGGGTGTTCGGCGCTGGCTCCGGGAC 9766247 36 100.0 36 .................................... TCAAAACAAGATGTTCAGTGCACGAGTGGTGGTGGC 9766175 36 100.0 39 .................................... GCGAGGTGCTGGTGGCCGAGGACCGCGATGGTCGAAACG 9766100 36 100.0 37 .................................... ACGACTGGCTGGCCCGCGCCTCGCCCGGGAGCCTCGA 9766027 36 100.0 40 .................................... GAAGAGGCCGAGAAGGAGGCGCGAACCGAGGCCGCGCGGG 9765951 36 100.0 35 .................................... TGCATGCCGGCCGGCAGCCGCACCGTGAGGCGCGT 9765880 36 100.0 37 .................................... TGCTCGTAGCCGCAGAGCGCCGGGAGGATGTTGCCGA 9765807 36 100.0 32 .................................... TCGGCCCGGACGCCGAACCTTTGAACTGCCAC 9765739 36 91.7 0 ................................TT.T | ========== ====== ====== ====== ==================================== ======================================== ================== 24 36 99.7 36 CTCGCCGCCTCGATCTCGAGGCGGACCCGTTGAAGC # Left flank : GAGATGTACCGTAGCCTCGCCGACCACTCCTCACGCAAGCTCATCGATCGCCTGATGAAGATCGACCTCCTGGTCATCGACGAGATGGGCTATCTCAACCTGCGGCCCGAGCAGTCCAACATCTTCTTCAAGCTGATGGAGGAGAGGTATGGCAAGCGCTCGACGGTCGTGACCACCAATTTGGACTACGACGACTGGTACGACTTCCTGGGTCACAAGGAGATGGTCGGCGCTCTCCTCGATCGCCTGCGTCACCGCTGCACGACCATCCGCATCACCGGCCCCTCGCTCCGTCGCTCGACCGACACCGCCTGAGCGCCGCCCCCGCGCACCGCCTCCGAGGACAGGACCGCCCCCGCCGCGGCCCTGTCCTTCTCCGTCCGCGCAGACGCCCCCCTTCGGCACGACCGCGCCGCGATCGCCGATCCGCCGAGGGGTCTTTCTCGGCGAGCACCAGGGGGTCTTTCTTCGATAGCGTCGAAGCATCCTGCTCGCCGCCG # Right flank : CGCCGGTCGCAAACCGCGCGAATTCGCCGATGCACTTCGCCGACATACATCGCCGACACGTTTCGCCGACAAATTTTGCCGACGCATCTCGCCGGCGCATCTCGCCGGCGCATCTCGCCGACGCGTTTCGCCGCGCCTGTTTTCGCCGGCCAGCGCGCGCGCCGAGGCCGGCGCCCCGCGGGGCGCCGGCCTGAGCGATGTGGTGCTGGTTACTCCGCGGCGACGGCGTTGGCGCGCTGCGAGCGGCGAGAGCGGCGGTCCTTGGCCTCTTTGAGGCGATAGGAGTCGCCGGCGATCTCGACGATCTCGGCGTGGTGACAGAGACGATCGACCAGCGTGCCGACGCAGGTGGCATTGGGGAAGATCGCGCTCCATTCGCTAAATGGCCGATTGGTGGTCACGACAGTGGAGACCCGGCGCCGCCTCGATCTCGAGGCGGACCCGTTGAAGCAGGATGACGCTCGAGTTCGCGGTGCCCGACGCCTTCACTCGCCGCCTCG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCCGCCTCGATCTCGAGGCGGACCCGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-13.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 9772300-9772916 **** Predicted by CRISPRDetect 2.4 *** >NZ_NETK01000001.1 Nannocystis exedens strain DSM 71 utg0, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 9772300 36 100.0 39 .................................... GCCCGATCAGTTGCCGCCCACTGATCAAAGAAACCGCGA 9772375 36 100.0 37 .................................... TGGTGGCCACCGGCCGAGTCGGCGGGGTGAACATCGC 9772448 36 100.0 37 .................................... CTGGTGTAGCAGCCGCAGGTCGTCGAGCGTGAACGGG 9772521 36 100.0 35 .................................... AGTCGCTCCGCCGCCCGTAGCGACAGCAGTCCGTC 9772592 36 100.0 36 .................................... CTCGGCCTGCGAGGAGGTATACGACGCTCGCGCGCG 9772664 36 100.0 37 .................................... GAGTCGTGCGCCACGGCATGGTGAGCGGTGGCCCATC 9772737 36 100.0 36 .................................... AAGATACCAGGACGAGGGCGGATGGTACCACGACGC 9772809 36 100.0 36 .................................... GGCCGAGCGCCGGGCACACGCCAGCGAGGCCGCGGC 9772881 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 9 36 100.0 37 GCTTCAACGGGTCCGCCTCGAGATCGAGGCGGCGAG # Left flank : CTCGCGGTCGGCGGAATCGCGTGGAGTCTGATCCCCAGGACCTCCGTGATGCGCTTCATCGCCACGTCCGATGGCCTCACCGTCGTGGGTGACGGCGTCCCTCTTCACCACGGCCAGCACTTCGTGGCCGACGACGTCGAAGGGGTGTTCGTGCGGGCCCTCGCGCGATCCGAGCGCCCCGAGGATCGCCGCTTGGAGCTCGTGCTCCTTGAGCGCCATGGTCGGCGCCAATCGCTGCTGCGCGGCCTCGACGACCCCAAGACACTGTCGTGGATCGCTACTCACATCGAGCGGGCGCTCGGGTTCGAGGGAACCCCCGGGCCGCCCAAGAGACTCGGCCCGGGGTCCTCCACCGTACACTAAAGACCTCGACGACGCCTTTCTGCAGGCGCTTGGTCTCGCTATCCAGAATGGACCCCCCGGCCAGGGGGTTCGTTCTGGCGAGCGGAAGGGGGTCATTTTCCGATAGCGCTGAAGAGGATGGCGTCGAGCGCTGCCCC # Right flank : GAGGTCGATCCTCGAGGAGTGCCGCCGCTGGCGTACCGCGCTTCAACCGGTGTTGTCGCCGGCCACGATCCGCAGCGTAGCGCCGGTGTCCGGCGCCGGTGGGTAGCGCCGGTGTCGGACGCCGACGCAAATCGCCGGCGCACAGCGCCGGCGTGGACGTGATGCGGGAGCTGGCTGCGGGCGGTCAGCCTGGGGGTTTTGGCGGACGGCTACGGCGACGGGAGGTGCGTTCGTTGGCTTCCTTGAGGCGCCAGGATTCGCCGGCGATCTCGACGATCTCGACCTTGTGGCAGAGGCGATCGAGGAGGGTGCCGACGCAGGAGGCGCTGTGGAAGACGGCGGCCCACTCGCTGAAGGGCCGATTGGTGGTGATCACGACCGGCGCCTTGGTGTATCGCTGGGAGACGACCTCGAAGAGCAGGTCGGCGTAGCGGTTGCTGTAGGGCAGGTAGCCGAGCTCGTCGACGACGAGCAGCGCGGGCTTGACGTAGCGGTGCAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAACGGGTCCGCCTCGAGATCGAGGCGGCGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-13.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 5 9782433-9776310 **** Predicted by CRISPRDetect 2.4 *** >NZ_NETK01000001.1 Nannocystis exedens strain DSM 71 utg0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 9782432 36 100.0 40 .................................... GAGATCATGGACAGCGCCCAACTGGCGGCCCGGCTCCAGA 9782356 36 100.0 38 .................................... CACGGGCCCGAGCCGTATCGCAGGCGCGCCGTCCAAGG 9782282 36 100.0 35 .................................... GGACCGGACTGGGCCGCGAGGATCTGGACGCTGGT 9782211 36 100.0 35 .................................... ACTCCCGCCCATGTTCGCCCGACACCTCTCCGACC 9782140 36 100.0 38 .................................... TCCGAGCGCCCGGACGCCGAGTCCGCGTCCTCAGTCTC 9782066 36 100.0 39 .................................... TGCCGCTCGCCGGACCACCACGGCCCAGGCATCCCAGGA 9781991 36 100.0 37 .................................... TCTCAACCATGGCGAACCTCCCTCAAGTCCTTCAGCA 9781918 36 100.0 35 .................................... GTCCCGGTCGGCAGCGGCGGGGACGATGGCGAGGA 9781847 36 100.0 36 .................................... GAGATCGCCTCGTCGGACGCGGCGAGGTTTAACTCC 9781775 36 100.0 35 .................................... TCCGGCGACGCCGACCTGTCGAACGTCAACGCGCC 9781704 36 100.0 35 .................................... ACGCTCACCTTCACATCAACCATCACCATCGTCAT 9781633 36 100.0 35 .................................... TACCGGGCCCATACAACCTGTCCCGGAGAGCAGGC 9781562 36 100.0 36 .................................... GGCGGATCCTCGAGCGGTCCGGCAACCGCTTCCACC 9781490 36 100.0 36 .................................... GGCACGCCGGTGCCCTGCGACCGGAAGAACTCCATG 9781418 36 100.0 40 .................................... ATCTTGTTGGGGTCAGGCACCGCGGTGGCGTGGTTGCGCA 9781342 36 100.0 38 .................................... TGGCGCCACGCCGTCGCGGTCGGCCTGCTCCACCCCGA 9781268 36 100.0 40 .................................... CAGCGTTTGCGGCCAGGACGGTGCATGATGGCCAGTGCGT 9781192 36 100.0 37 .................................... CTGGTGCCTGGGCTGGGCCCAACGCGTCGCCGGGCTG 9781119 36 100.0 39 .................................... CAACTGGCCGACGTTGCCCCCACGGGCTCGGCTCTGCCC 9781044 36 100.0 36 .................................... GCAGAGGAGCGGCTCCACGCCCGGGAGCAGGTAGTC 9780972 36 100.0 37 .................................... CCGACGTAGAGGCGTCGCTTCAGAGCCGCCGCAGCAC 9780899 36 100.0 36 .................................... AATCTGGAGCTCGGGATCCCTGTTGAGGACAGCGAC 9780827 36 100.0 34 .................................... TTTCCCGAGCTAAAGTAGGCGACCCGTTGGCCAC 9780757 36 100.0 34 .................................... TTTCCCGAGCTAAAGTAGGCGACCCGTTGGCCAC 9780687 36 100.0 37 .................................... AGACCATGACCCCAAGCGCTCGCGCTTCGAGGTGTTC 9780614 36 100.0 37 .................................... AGCTTCGCGCACGGCCAGGTGATGCCACGGCGGGCGA 9780541 36 100.0 37 .................................... AACTCCCCCCGGACGACGGTGTGCTCGATCGCCCCCA 9780468 36 100.0 35 .................................... AGGGCGCGGTTCGCCACCCGAGGCCGCAAGTCGCG 9780397 36 100.0 36 .................................... CGCCAGTACGTCGAGCGCCTCGCGCCCCTATTCCCC 9780325 36 100.0 34 .................................... TTGTCATGGGCGATCAGCGGCACCGAGTCGTCCG 9780255 36 100.0 34 .................................... ACCATCATGATGCCGTGGGCGACCCGGAAGATGG 9780185 36 100.0 36 .................................... GTCGCCGCCCGGCTGCTTCTTCCCGAGCGGCTGCAG 9780113 36 100.0 37 .................................... AGAGCGGCCGCACATGAGTCACCTCAGCTCGAGGAGC 9780040 36 100.0 37 .................................... TCGTCGTCGACCTTGTTCTTCGAGACGAGCTCCACCG 9779967 36 100.0 36 .................................... GCTGCGCGTATGACTGCATACCGGATACGATAGCAT 9779895 36 100.0 39 .................................... GGCAGCATCAACCAGCTGGGCAACGAACTCGGCATCAAG 9779820 36 100.0 35 .................................... CACGGCTGCGCAGTTCCATGAAGACCCGGCGTTCG 9779749 36 97.2 35 ..........................T......... TTCGGGTCCGAGTCGATCGGCAGCATCGGCGCCGC 9779678 36 100.0 35 .................................... CCGCGCAGCCTCGCGGGCGTCCCTCGCGTCCTCGG 9779607 36 100.0 37 .................................... GGGTTCTCCACGGAGACCGTTCCGGTGAACGTGGTGT 9779534 36 100.0 37 .................................... GGTTCGCGCGGGGCCTTGCCCGACTCACGGAAGCGCT 9779461 36 100.0 37 .................................... GAGGTGTTGCGCATGCGCGTGATGTCGATGGTCGGGG 9779388 36 100.0 40 .................................... CGGACGGTGCCCTCGCCGAGCACCGCGTGCGCGGGCGCGT 9779312 36 100.0 36 .................................... TCTCCTCGCGGCTCTCGCCGCGCTCGCTCTCCCTGC 9779240 36 100.0 38 .................................... GCCGGATGCCCGATCGTCTGGCCGGGCGGGATGCCCTC 9779166 36 100.0 34 .................................... GACAACGCGGCGTCGGGGTCGGTGAGGTCCGACA 9779096 36 100.0 36 .................................... TGCGACGCCGCGTAGGTCTTGACCGCCTTCTCGGCG 9779024 36 100.0 35 .................................... AGCCTGACGGGCGTGATGAACATGATCAACGCCGG 9778953 36 100.0 38 .................................... GCGTCGGTCAAGCCGCGAGCCTTGGTCTCCAGCGTGTT 9778879 36 100.0 36 .................................... AAGTCGCTCCCGGCAGCCAGCATGTGCGAGAGCGCG 9778807 36 100.0 35 .................................... CGGACGTAGCCCTCGACCTCGGCGGCCAGCCGGTC 9778736 36 100.0 37 .................................... CTCGCCGGCACGCTCGAGCTCCTGCGTCGCTGCGACG 9778663 36 100.0 42 .................................... CTCACGTCCGCCGAGGAGTCCGACGCCCGCCGCTTCCTCGAC 9778585 36 100.0 38 .................................... ATCACCTCGGGGCAGTCGCCCAGGATCCACCATCTCAC 9778511 36 100.0 38 .................................... AGGCTTGACGCCAACGCCATCCGGCTTGGGGCGACGCC 9778437 36 100.0 36 .................................... CTGGTCCCTCGAGGATACGTACGTGCATCTCCAGCG 9778365 36 100.0 34 .................................... CGCCGGTGTCGGGCGAGCCCGCCCTCAGTCAGTC 9778295 36 100.0 34 .................................... TCACTCGCCGAGGCGCGCGCAATGGTGATGGACC 9778225 36 100.0 35 .................................... CAGAGGGCGATCGCCTCGTTGCGGGCCCCGCGGAA 9778154 36 100.0 34 .................................... CCAACGCTGCGGTTTTGGCTGTCTTGGGGCGGCG 9778084 36 100.0 38 .................................... GTAGAAGCCACGCGTGTCAGGGCGAAAAGCTCGCAGCT 9778010 36 100.0 37 .................................... AAGCACGAGCGGCGCGGGTGCAGTCGGGTTCGTCGGT 9777937 36 100.0 37 .................................... CTCGCCGACGATGTCGACGGCCAGCGAGGTCCGCCGG 9777864 36 100.0 36 .................................... TGAGCTGTGGCGGGCAGAAGCAGCGCTCGGCAGCGC 9777792 36 100.0 35 .................................... ATCTGATCACGGCGGAGGGAGAGAACTTCCATCGT 9777721 36 100.0 35 .................................... TATCGAGAAAGAACCCTGGTGGTTCACCATCCCGC 9777650 36 100.0 36 .................................... CTGACCTCGTCTCGCCGACCGCCGTGGTCGCTCGCA 9777578 36 100.0 34 .................................... AGCCTGGAGAAGCACGTCCACCTGGACGAGGCCC 9777508 36 100.0 35 .................................... TCATATACTTCCGCGACATCCCCCAATATCCACAC 9777437 36 100.0 37 .................................... GCTGAGAAGACCGACGAGGCCATTGCGGCCGCGCTGG 9777364 36 100.0 38 .................................... TCCAGGTCATGGGGTCCACGGCGTGGGGGTCGCCACCG 9777290 36 100.0 36 .................................... CGTCCTCAGGTCGCACACCAGCTCTTCCAATCGCAG 9777218 36 100.0 36 .................................... TGCAGGCTCCGGACGCGGCTGGCGTAGGCCCGCCAC 9777146 36 100.0 37 .................................... TGTCGCCCGGGAGCCCCTCCGGGGCCGGGCCCACACC 9777073 36 100.0 36 .................................... AGGTCGGAGGCGAGCACGGGCCGGTTGTGTCGGGTG 9777001 36 100.0 36 .................................... AGCCCCGAGGCGATCGAGATCCTCAAGACGCTGCCC 9776929 36 100.0 35 .................................... CCCGCCGCGGCCGCCCACGCCACAGCGGGCGGCAT 9776858 36 100.0 40 .................................... TCCGCCGCCTCGATGCCGCGACGTTTCAACCACGTTGCGA 9776782 36 100.0 33 .................................... CACTCCGCCGCGGTAAACCGGTCGGTGGTCCAA 9776713 36 100.0 37 .................................... TGGCGGCACCCTATGGCTGGCTGTCCCGCGCACCGGC 9776640 36 100.0 41 .................................... CTCGGCCAGGCGGATCACCTGTTCCGGCAGCACCGCTCGCC 9776563 36 100.0 40 .................................... AACGGGTAATCTGGCGTCCCCGGTCGAGCGGTCGTCGTGA 9776487 36 100.0 35 .................................... ACGGGATGCGACGGATCCGCCTCTCGTACTCGCAA 9776416 36 100.0 36 .................................... GGAGTGTCTCAGCGATGAGTTCTCGGTGATGCTGCC 9776344 35 88.9 0 ..........................T-..C..C.. | ========== ====== ====== ====== ==================================== ========================================== ================== 85 36 99.8 36 CTCGCCGCCTCGATCTCGAGGCGGACCCGTTGAAGC # Left flank : GCGTTTCGCTCGCACCAGCTCCTCGCCGTCGAGCTCGGTCAGCATACTGCCGCCCCCGCCCCGGCCCGCCCAGAACCGGGCGGGAGCGCGACGCCCGCCCCGGATGACCGCTCCGGCCGCTTCTCGACCTACCGTCGAGACCTCACCGGCGCCGCCATCGACGCCCACCTGCACGGGGACGTGTGGACCATCGACATCGACGGCCAGGTCCACGCCTTCCGCCCCCACTCTGGGGGCTCGGACGAACCCTGAATCGTCTGCCGGACGGCGGCAAGATCCGTTCCAGCAGACGGCCTCGCTCCGAGAATGCACGCGACCTCCGACCGCGCCGTCCCCGGACCTTCCGTGCAATCCCTCGCAGAACGCCGTCTCCCCGGTCCTCAACGTTCCTTGACAACCCTGATGCAGAACAGGAACCTGGGCACTGAGCCGTCGCTCATGCCGCCGCGTGCATCCTCGACCGATAAGCCAGGCGATCTCGCAACCCTGGCCCCCAGGCC # Right flank : CGGCCGAAATCCGAGGCGCAGCGCCGATGAGGCGTCAACGGTCAGCGGATGAGGATCAAGCAGCGCGTCAAGTTTTCGGCGAACGCTGGCGGGTCGGGTAGAGGGAGCGCGGCCGCCAAAAGGTGAGCGCTGAGAGGTAGCGACTCTCAGCGCTCGGTGTCGTAGCCGGCCGTACCCCAAAGGACAGCCAACAAAGAAGCGACGGCAGGAGGGTACGGCGAGGGCTCGGGGAAGTCCAGCGGAGTGCGTGGCCGGGCACGTGGTCGATCGAGGACGAGAGCCAGCGACTGTTCAACTGCGGGAGGTGCCGGCGGCAGGTTTCGGTGTGCCGGGCCTGCGACCGCGGGCAGCGGTACTGCGGGAAGGACTGCGCGGCCCAGCAGCGGCTTGCGTCGGTGCGGGCGGCGAGGCGGCGTTACGCGCGGAGCATGCACGGCCGGCGGATGCACGCGAGGGCCGAGGCGAGGCGGCGCGCCGAGCGGCGGATGAAGATCGTGATG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGCCGCCTCGATCTCGAGGCGGACCCGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.60,-13.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //