Array 1 124529-123951 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOPK01000003.1 Escherichia coli strain MOD1-EC6878 MOD1-EC6878_3_length_342798_cov_35.9108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124528 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 124467 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 124406 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 124345 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 124284 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 124223 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 124162 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 124101 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 124040 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 123979 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 141584-140030 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOPK01000003.1 Escherichia coli strain MOD1-EC6878 MOD1-EC6878_3_length_342798_cov_35.9108, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 141583 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 141522 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 141461 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 141400 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 141339 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 141278 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 141217 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 141156 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 141095 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 141034 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 140973 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 140912 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 140851 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 140790 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 140729 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 140668 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 140607 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 140546 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 140485 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 140424 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 140363 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 140302 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 140241 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 140180 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 140119 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 140058 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //