Array 1 106839-106138 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTBF01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain EWV9 isolate EWV9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106838 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106777 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106716 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106655 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 106594 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 106533 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 106472 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106411 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106350 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106289 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106228 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106167 29 96.6 0 A............................ | A [106140] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 124402-122971 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTBF01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain EWV9 isolate EWV9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 124401 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 124340 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 124279 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 124218 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 124157 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 124096 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 124035 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 123974 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 123913 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 123852 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 123791 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 123730 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 123669 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 123608 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 123547 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 123486 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 123425 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 123364 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 123303 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 123242 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 123181 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 123120 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 123059 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 122998 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 130682-130043 **** Predicted by CRISPRDetect 2.4 *** >NZ_CTBF01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium str. DT104 strain EWV9 isolate EWV9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 130681 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 130620 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 130559 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 130498 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 130437 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 130376 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 130315 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 130254 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 130193 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 130132 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 130071 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCCAGCGGNNNNNNNNNNNAATATTATATGTAATACTTTCAATATATTTATTTCATGTATGTTCCAGAAAAAACAAAAAAGCGGTCTTTTTTGAATATTAAACTGGCGTGCATGCTACTCGTTTTTCCGTAAAAGTGAAATAATTTATTTTTTTTTGAAAGGGAAGGCTCTTTGGGTGGGGTGCTTATAGTGTTTGCATGATTTTTTTACTTAATTGATGTTATTTATAACGTCTGGTGCAAATATCTGTTTTTTTAATAAATTAGTTATATGATTATTATATTGTTGTGTATCGATTAATAATTTTAAAGTTATACGGGAAAGGTAGCATTCAACACCTGTTAACAATATATTTTATTATATAGGCGTTGTCGTAGTGTCTCTGTGCGTGAATGGTTAAGAATAATACGTTACAATTGTCGCTGGTATTTACAACCGATTAAAAACCATGACAACT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //