Array 1 8366-7858 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPZ010000009.1 Pseudomonas cichorii strain LCDW04 Scaffold9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8365 28 96.4 32 .................T.......... TCGGTCATGATCCCCGAAGCGACGTAGTTGAT 8305 28 96.4 32 .................T.......... AAGCGCTTGGGGACCGCATTCAAGGCCATGGC 8245 28 96.4 32 .................T.......... GCCGCAAGCTCGCCGCGCTGGCCAGCCTCTTC 8185 28 96.4 32 .................T.......... CGGATGCGCTGACAGAAACCCTTGAACTCATC 8125 28 100.0 32 ............................ CGCAGATTCAACGCCCTACCCGTTCAGCGAGC 8065 28 100.0 32 ............................ CACCAGCGGCGGTCCTGGTCTTCAAGGGGTAT 8005 28 100.0 32 ............................ TGCTGGCCGGTAAGCATGCTCGGGCGTGTGAG 7945 28 100.0 32 ............................ ATCTTGAAAGTCCATGCCGAATGTGTCGTCGG 7885 28 71.4 0 ...........CA.......T.C.ATTC | ========== ====== ====== ====== ============================ ================================ ================== 9 28 95.2 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACCTTGTTGACCAATGATATGCGCATCCCTATACTTCGCCGCCATTGAGCCCTGATGGCGGAATTGGTAGACGCGGCGGATTCAAAATCCGTTTTCGAAAGGAGTGGGAGTTCGAGTCTCCCTCGGGGCACCAAACAGCAAGACACCCAAGCGGTTGCAGAGCTTGGGTTTAAAAGAAACCGGCCAGTTGAGCCGGTTTTTTTGTGCCTGGGTTTTGGTGATTATCCGGCCTGATTGCCGGGCCTGCGAATTCATTCGCGAGGCGGTGTTCCAGACAATACATATCCTTTGAATGTACCGGCCTATCGCGACTGAAGTCGCTCCTACAGGTCCGGCGCCAAACCACGCCTTAACGCACCCTCTTTTCGACCCTCTTTTTTCAGACTCCGTCGCCCCCCCTTTAAAATCAATAACTTACGAAAACCACAAAAAAGAGGGTAAAACGGCCTCAGGTAGGTGGTTTCTCTTTAAAAACGGAGAGTTATTAGGCAAGGTGTCTA # Right flank : CACTTCACAACTTTCAAATCCTACGTTCAGCCCACACTCGACCTACAACCACTTGCTCCTGATTACCCTACCCAAGCTGAACTTCCTCATTTAACCAACCCGGCCCTCAGACTACGCTTCCTGCCGTTCGCTACCAATTCAGCGACCGGGTTTGGCGACCCGACAAAGCTAAATCTCTCCCCATCGTGATGCCGGCGCTTTATCCTGTCGGCTCATCGCGTTATGGCGGTTGTGTGCGGGAGGCCTTCGGGCCTGCCGGGCTTGGAGATGGCTACCGGTTCGCCAACCCACACACAACTGCCACCCATTGTTTGGCGACAATTCGGGCAGTTCCATCAGCCATATCCGATGAATGAAAACCATGCAAAATTTCAGCAACAACCTTCCCTGCACATCCTCCTTCCAAGCCACCCTCTTCCTGCGCCACAGCCGCATGCTCCGCGCCATCTTCACCGAATCCCAAGCCTGGTTCTGTCTCTCAGACCTTGCTCGCCTGATGG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : CTTCACTGCCGTGTAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15163-15551 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIGPZ010000014.1 Pseudomonas cichorii strain LCDW04 Scaffold14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 15163 28 100.0 32 ............................ TGCAGGCGAGTGATGCGACTGTCGGAGTAGTT 15223 28 100.0 32 ............................ GCTCAGGTTTTCAGTTGTGGTTATGCGGCACG 15283 28 100.0 32 ............................ CATCAGCCACGAGCGGAATGCCTCTGGCTTGA 15343 28 100.0 33 ............................ TACGACGACTACGAGAAGTGCCTGGAGCGCAAT 15404 28 100.0 32 ............................ ATTTCAGCCTGTAGCGGTTGAGCGCTGCGACG 15464 28 100.0 32 ............................ TACCTTCCCCAACGGACGCAAGATGATTACCA 15524 27 75.0 0 ..........-.A.......TGA...TT | C [15539] ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.4 32 CTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : CCCCTCGAAATGCGCATGCAGCGTCTCGATACCGGTATCGCGGTCCTGAGCAAGATTGATCCAGTTGCTCTGAGTCATGGCAGGCTTATGGGCAAACAAGGGGATAGAGAAGCGTGTTATCGCGCATGGGGGATGGGAAGTCTAGAAGGTTTGTGCAGGATGCCTTCAAGGCCTTTCGCGAATGAGTTGGCTTGTGTGGGAGCGACTTCAGTCGCGAAAGCAGTGCTTCAAGCGATATATCTCTATCGGATGTACTCCCGTGGGAGGGGGCTTGCCCGCGACAATGCAAGGGACAATATCTACCGATGCGTGCCCGTATCTACAGCGAGCAATAGACGCACAAAAACATTTTCCGAAATGCTGATTCTGACCCTCTTTTTTTCACCCAATATGCGCCCCTTTAAAATCAATCACTTACATATCTGATGAAAAAAAGGGGTAAAACGGCTGCTGGCGCATATTTTTCTTTGAAAACGGAAGGTTATCGAGGAGAGTGTCTA # Right flank : TGTTCGCCATCGCTCACCCCATTTTGAGTATTTCTGAGCTGCCTATACGGCAGTGAAGAAGCGTGGCGCGGAAACTGGAGCTGGCCTATCTTTCTGAGCTGCCTATACGGCAGTGAAGAGGGTCAGGATCGCCAGCTCATCGACACGGTTTTTCTGAGCTGCCTATACGGCAGTGAAGTAGACACTCTGCTCGATAACCCTCCGTTTTCAAAGAAAAATATGCGCCAACAGCCGTTTTAACCCTTTTTTTATCGAGCTTTGTAAGTCATTGATTTTTAAAGGACGAATCTGAGGCGAAAAAAGAGGGTCAAGAAAGGGTTCATTCCTGTCCGCCGTATACAGGTGCTCACCCGCAGCAAGACAGCGCCGTACTTTTTGATATGTCGTCGCCAGCGACATGACCTCATAACATGTCGCTAGAAACCGGAAATTGCGACATGACGGCTTGGAAAAGCTCCATTTCCTGACATATTTTGTCTGAAGGATGTCGCGGCCAAGGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //