Array 1 108436-106772 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOK01000119.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 92-0138 SEEH0138_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 108435 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 108374 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 108313 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 108252 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 108185 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 108124 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 108063 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 108002 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 107941 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107880 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107819 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107758 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107697 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107636 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 107575 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 107514 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107453 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107392 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107331 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 107228 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 107167 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 107106 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107045 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 106984 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106923 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106862 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106801 29 96.6 0 A............................ | A [106774] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125820-124694 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMOK01000119.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 92-0138 SEEH0138_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125819 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125758 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125697 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125636 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 125575 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125514 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125453 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 125392 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 125331 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125270 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125209 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125148 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 125087 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 125026 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124965 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124904 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124843 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124782 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124721 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //