Array 1 700752-698900 **** Predicted by CRISPRDetect 2.4 *** >NC_012622.1 Sulfolobus islandicus Y.G.57.14, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 700751 24 100.0 40 ........................ TATTATGTCATCTAAACTATCAACAGATGGCATTACATTT 700687 24 100.0 46 ........................ TCTTTATAAATAACACGGGCAATTTGTTCATTTTTACATATCTCAA 700617 24 100.0 43 ........................ AAAGTTGTTGAAGGTGCAAGAGAAGAAATTTTAAAGCTAATAG 700550 24 100.0 42 ........................ TGGTAAATGGCTCTGTTAGGACCAGTTATACCGTATTCGCTC 700484 24 100.0 42 ........................ ATTTGTCATATACAAAATATTATGTATATGAGTTTGTCTGTT 700418 24 100.0 43 ........................ ATAATATCTGTCTATAGAAGAAATAAAATCACAAGAAATCTTG 700351 24 100.0 44 ........................ TATGTTGATAGATTCGTTTTAGTAGACGACGGTACTTTTCCTCC 700283 24 100.0 41 ........................ AAAATATTAGCAAATTCATCTTTAACTTGCATGTTTATTTA 700218 24 100.0 43 ........................ CTTAGTAATTTAACATAATTTGACCCATTCACTAAATATACTT 700151 24 100.0 43 ........................ AACATGTTATTTCTTTCTTAATGTCTCTCTCATGCATGCTCTA 700084 24 100.0 43 ........................ AATGCACTGTGTCCATTGGCTAACACTTCAACAAATCCTGTAA 700017 24 100.0 41 ........................ AGTACATATGTTATAATAGTGATAGGAAGTGAAGGAAGTAG 699952 24 100.0 41 ........................ TCTAATGTCAACATAACTTAACACTTGTATCTTGTTTTTAG 699887 24 100.0 38 ........................ AAGGAGAACGGCATCAAAATTGGTCTGTGAAATAGAAA 699825 24 100.0 40 ........................ TATGTTGGGATATATTAGAACTATTAGATCTTGACTATTC 699761 24 100.0 41 ........................ GCTAATGCTTTACCTCCGGCACCAGCAATTATGTCTCCTAC 699696 24 100.0 41 ........................ TTATATTCTGTTGGTATTATAGTGAATCCAGTCTCTATATT 699631 24 100.0 39 ........................ AATATTGCCTACCGTTGTATTCGTTATGTCGATTACTAA 699568 24 100.0 41 ........................ TGTCAACTGGTATACCAAAGTCATCATCAACATTCTTTACA 699503 24 100.0 42 ........................ TCAACAATTCCTGCTAAGATTTCAGTGAAAGTGTTCTTACCT 699437 24 100.0 42 ........................ TTCTACAACATCTTCACAATAATTATCAATACAATCAATTTT 699371 24 100.0 40 ........................ TCAAGGTCTTTCGCAAAAACTACCCACATCCTCTTCATTT 699307 24 100.0 40 ........................ GGAACGACCTTAATAATGGTTTTATTGCCAACTCGTTTTG 699243 24 100.0 40 ........................ CTAACTTCTACAAGTTCATTATCTTTGAATTTAAAACAAC 699179 24 100.0 41 ........................ CATCCTCTGGATTTAAGTGTTGATATTCAATTTCATTTTCG 699114 24 100.0 40 ........................ ATTATTGTAGTGTTTTAGTTTAAAATCTTATCAACTCATA 699050 24 100.0 39 ........................ GTCACTTTTCACTTTACCTTCTTTGAAATTTGTTATTTT 698987 24 100.0 40 ........................ TTAATTGCTGACGATTTAAATAAACTCATTGACGCAATTG 698923 24 95.8 0 .T...................... | ========== ====== ====== ====== ======================== ============================================== ================== 29 24 99.9 41 GCTAATCTACTATAGAATTGAAAG # Left flank : ACTAATTTTAATTTCAATTATTTCCGGGCTAGGATAGCGAAGTCGTAGAGTTTGGATTTTTAAGTTTTCTATAGCAGCTCTAGTTCCTTCCACTATGGGACTAGGAACTACTATAAGTAATTTATCCTCCTTTTGAGCTGAAGTCTCATTAAGAAGTCTTAGAAGATAAGTTTCATTAAATCCCAAAGTTACAAAGTAAGACTTCATCATTATATATGGTAATATCATAAATAAATAACTTTTGATTACTTTCGAAGAACTCCAATTCCAATTTTTATTCCCTACTATTTCCGTTGTTTTCCTTTTTCCTTGTTTCGTTTTGGGTTAGGTTGTTATCCTAAATTCATTATCTTTATGAAGAATTCCTTAAGATCCCGGGAAAACCCGGGAATAGAAAAAAAGAAAAGAAAGAGTAATATAATACTAATGGAAAGAGTAGAGAAGAAAAACTTATAAGAAAGGGAGAAGAAAAGACTAAATAGAGGGTTAAAAAACCCTCA # Right flank : TTAGTGTATATTACCCTTGCAATTACTTCGTCTTCACATATTTGTTAATCTACTATAATAACGCCCTTCAACCTCTCCCTAAGTATATTGTCGGCATCTATTGGTCTCTTCTTGTGGATCTTGTAGAATTTTATGTAGGGAATTTTCAGTCTTTTTCTCGCTATTCTCCAAGCTGTTACGTGAGAATGTCCGGAATGTAATTATCTGAATGAATATATAAATGGAATGATAAATATTAATATTATCAGAAGTATATAACCTGGTTAATCTGGAAAAACTTGATCATGGAAAAATATCAAGTTAAGAAGATTTATTTATCATGCATGGTGATGCTTGAGTGCGTAATGACGTTTCTTAGAGTTGAACTATTCGACGTCCTGGAGGGGTTCTTCGTTGGACGGCTAGGAACATCCTGATGTTGTAGAAGACTCCCAGGACGTGGAGGAAGGCTTCGTTCCTCCACACCGTGGTCCCATAGGGCCTCCAGAACTTGTACAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 706739-708430 **** Predicted by CRISPRDetect 2.4 *** >NC_012622.1 Sulfolobus islandicus Y.G.57.14, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 706739 24 100.0 39 ........................ GCAAACAATTGTAACTGCGATAACGGGTTTGGTGTCGTT 706802 24 100.0 38 ........................ CAATTATTATGAAAATTCTTTAAGCGAAACTGGAAAGC 706864 24 100.0 41 ........................ ACTTTCTGTACTCTGTTATTTATAATCTTATAACAAACGAT 706929 24 100.0 40 ........................ AACGAGGTCGTGGATAGAGCCAAACGAGGTCGTGCTGAGG 706993 24 100.0 40 ........................ TAAACGATGTTGCAACTAGGTACGCCAATAATGTTAAAAT 707057 24 100.0 42 ........................ ATACTTTTTCTAGACGTAAAACAACTCGAGACATTAATTCAA 707123 24 100.0 40 ........................ AGAACTTTTGCAATGCCAGTCTTATGACTTCACTTCTGTA 707187 24 100.0 41 ........................ TCATTATTGATTGTTATATACAATTTATTATTTGATACATA 707252 24 100.0 38 ........................ AGTAGTACGTATAGCGTTGGGAAGAAGCTGAAGAACGA 707314 24 100.0 43 ........................ ACCACCTATCCATATCGTAAACCCAATCGAAGCAGGAATAGGT 707381 24 100.0 41 ........................ ACAGTTACAGAACACACTTATCCTTACCCAAACACAGCTAG 707446 24 100.0 41 ........................ AACGTGCTAGAAAATTACTGAAGACTTGCCCTTACAAAACA 707511 24 100.0 39 ........................ GACTGTATTTCTTCCCATTCCAGATTATAGATGTCTTGT 707574 24 100.0 38 ........................ AGTAGTCCCTCATCTCCAAGCTCACCCGGTCTAGGTGG 707636 24 100.0 38 ........................ AAGGCAAAAGAATACCTAAGACAGTTAAAAGAAGGAAA 707698 24 100.0 40 ........................ TTTATATCCACTTTTGCCATTTTGCCAATCTTTATTGGCT 707762 24 100.0 39 ........................ TTACATATCATGACGTGGTTTTCTTTTGCCTCGACTATT 707825 24 100.0 41 ........................ AACAAACTCTGATTTCTAAATCGTTCCTCAAACTCTGATAT 707890 24 100.0 44 ........................ ATTTTCATATTTTTATTTACATTTTTTGTCTCTCCAGCTATATA 707958 24 100.0 41 ........................ GTAGTATCCTTTCCTTCTAATCGTAGCAACTACACTGGCTC 708023 24 95.8 42 .........A.............. TTTTTCTCAAGTGTTTTTATTCTTTTATTCATAATTATTTTG 708089 24 100.0 37 ........................ TTTGCCATGCTAAAAGTACAGGTGTCTCAACATATTG 708150 24 100.0 41 ........................ ACTGTCCAAAAAGGTATTCAAAAAAGTGATGTAACAATTTA 708215 24 100.0 38 ........................ ACATATGTTATTAATATTGTATCACTTATAGCTCTAAA 708277 24 100.0 40 ........................ CTTAGGTATGCCACTTTTAAGATAGCATTAGCTTTAGTGA 708341 24 100.0 42 ........................ TCTTCAGTTTACCGATATCGGTCAGAGTTTTTATTAACGCCT 708407 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 27 24 99.8 40 GCTAATCTACTATAGAATTGAAAG # Left flank : CAGACATAGACAAGCCTAGATATCTTCTGGGTTTTATTGGAGGCATATGATAATTCCAACCCCTTAGTTCCTCCTCTATAGGGTCAGAAGCCCTATAGGAGTGAAGCCTCCTAACTTGTCTAATTATCTGCGACCTCACGTTATACATTATGCAAAAAGAATCTAAAATGCACGATAATGATCCTTGTAAATTTCTTCCCGGTTTTAGTAAGGATAATCTTAATAAACGACGATTTTCCTCTTGATGAAGAATAATGGAAAATATAGGGAAAGTGTTCTCCCGTATATGATCCTTGTTTTCCTTTTTCCTTGTTTCGTTTTGGGTTAGGTTGTTATCCTAAATTCATTATCTTTATGAAGAATTCCTTAAGATCCCGGGAAAACCCGGGAATAGAAAAAAAGAAAAGAAAGAGTAATATAATACTAATGGAAAGAGTAGAGAAGAAAAACTTATAAGAAAGGGAGAAGAAAAGACTAAATAGAGGGTTAAAAAACCCTCA # Right flank : GAGGGCTCATCTTAAATGGGTAAACACGGAAACATCGTTTGGTGTTATTCAACTCTTTTGAGGGAAGAATCTAGTTGAGCCTATAGCATTTCAAATTACTTGTCATTTAACTTCATCATTATCATTATAATATACAACTTTATTCTAGTGACAATGATACGAAATTTCACCGTATTTAGAGTTAAGATAGTTTTCAACAGATTTTACAAATTGCTTTATAAATCTATTACTAGAGTTAGAGTCTTAAACTCAAATTTTGCCTTATCTATAGAAGATTAATAGAACACATGGGAAAGCGAAAATGGTCTTAAGGAGGCAATCTACGCCTCGCCTTTAACAGACATGAGTTTGGAACTGTAGGAGGAGACTGAAGGTAAATTTTCTGAGCAATCTGAAGTTTGTACATTATCTAAGGACAGAATGCCTGCCTTGTTCTACAATATTATCTATATGATCTGAAGTTCTGTATGCTTGTTCAAATTTTCCTATACTAGCTTCAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAATCTACTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //