Array 1 163676-161145 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNG01000040.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015019 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 163675 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 163614 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 163553 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 163492 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 163431 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 163370 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 163309 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 163248 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 163187 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 163126 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 163065 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 163004 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 162943 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 162882 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 162821 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 162760 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 162699 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 162638 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 162577 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 162516 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 162455 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 162394 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 162333 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 162272 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 162211 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCT 162150 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 162089 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 162028 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 161967 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 161906 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 161845 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 161784 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 161723 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 161662 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 161601 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 161540 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 161479 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 161418 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 161357 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 161296 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161235 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161174 29 93.1 0 A...........T................ | A [161147] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182531-180183 **** Predicted by CRISPRDetect 2.4 *** >NZ_MWNG01000040.1 Salmonella enterica subsp. enterica serovar Weltevreden strain CNGD2015019 scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 182530 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 182469 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 182408 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 182347 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 182286 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 182225 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 182164 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 182103 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 182042 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 181981 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 181920 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 181859 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 181798 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 181737 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 181676 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 181615 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181554 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181493 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181432 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181371 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181310 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 181249 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 181188 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 181127 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 181066 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 181005 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 180943 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 180882 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 180821 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 180760 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 180699 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 180637 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 180576 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 180515 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 180454 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 180393 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 180332 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 180271 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 180210 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 39 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //