Array 1 612-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCF01000001.1 Pseudoalteromonas ruthenica strain S2898 S2898_S33_L001_R1_001__paired__contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 611 28 100.0 32 ............................ TCAACAAGGGGGCAGAAGCAGTCAGCGACAGT 551 28 100.0 32 ............................ AGGTTGGCAAATTTAAGATTGCTTCTCGAGAA 491 28 100.0 32 ............................ TGCTGGCCTTTCTTACTGTGAACGCTATTTTT 431 28 100.0 32 ............................ CGTTGTCTCGCCCAGGTGCTCGCTAAATGCGT 371 28 100.0 32 ............................ GCGCCAAAAGGTGGCCGCATGATGCAGCCAAT 311 28 100.0 32 ............................ GGTTTCAGAAATCATAGGAAGATTAGTTGATG 251 28 100.0 32 ............................ TTCACCAAGTGCACAAAAGTCTGGTATGGCCA 191 28 100.0 32 ............................ TTCTGCGTGCCGTAGACGATGCCTAGTGCGTT 131 28 100.0 32 ............................ ATCGATAAACAGGTTTTGCGCAAATTGGTGGC 71 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : GTACCAGAAGACGTAACATGGGTGAGTTTTACTCGTCAGCATGTTAAATCACCTGGGCGTATTGATCGTGAGATGCGAGGAAAGGCTGAACGGTGGTCGGCTAAAAGTGGTAAGCCTTTAGTTGAATGCTTAGCAGAGCTAGAAAGCACCAAACCTTCTTCAAAATGTGACTTACCTTTTGTTTATTTACATAGTCAACAAACAAAGCAACGTTCACCAGACACCAATAGTAAATACCCTCTGTTTATTGCGTTAGCAAAAGTTGAAATTGACCAACAAGGAGTTTTCGATTGTTATGGTCTTAGCGCAAAATCAAATGGAGATAGAGAGTTGGGCTGTGTGCCACAGTTCTAACAAATAAAGGATTTTTTCCCCTTTATTTTTGTTCTTTAAAAATTTGCTTAAAATACAGTGTGTTGCAACATCCTGTGAAATTAAGGTGAAACTGGGTTTTTATCTTAATAGCTTGTTGCAACTTACTTTTTTTCATTTACTCTATA # Right flank : ATGTTCGCCCTGATAACGTGCCAGTCACTTCTGCTTCACTGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-3153 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCF01000036.1 Pseudoalteromonas ruthenica strain S2898 S2898_S33_L001_R1_001__paired__contig_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 1 26 92.9 32 --.......................... TTCTGAATCTTTATCTAATCAACGCAATAAGA 59 28 100.0 32 ............................ TTTGAATGTTGAACACTTCGTTTCTGTCTTTG 119 28 100.0 32 ............................ TGCTGCTCGACAATATCCTCATCTGATAATTC 179 28 100.0 32 ............................ TTCTGGAGAAACTAGCCAAAGAGAGGAAAATG 239 28 100.0 32 ............................ TCTCAAACTCTCCAAGAGTGCACAGGTTATGT 299 28 100.0 32 ............................ AGCCAGCAACCGACACCCTCAGACATGATTGC 359 28 100.0 32 ............................ TGACTTAATGATTAACAACACAACGGGCAAGT 419 28 100.0 32 ............................ AGCCTTCGCGCTCGTAGACATCAATGTGACCC 479 28 100.0 32 ............................ AAGATGAAAATAATCACGAAGGCCACGACTCC 539 28 100.0 32 ............................ ATGAAAAAAGTAAACATCTTAAAAAGCAAACT 599 28 100.0 32 ............................ AACGGCGTAAGCTCCAATGCAAAATGACATAA 659 28 100.0 32 ............................ TTGACGGTATTATCGACCAGTTATCAGGTTCC 719 28 100.0 32 ............................ TGTCTATCAACGTTATTCGATAGCCAATTGAC 779 28 100.0 32 ............................ AATAGCCTTACGTGTACGAAGCGACAGCGGCA 839 28 100.0 32 ............................ TGATGACTGTGAGTAATATTTACAAGACTCAC 899 28 100.0 32 ............................ AATGGTATCTCAGCCTTGAATTTACCTCTCGA 959 28 100.0 32 ............................ ACTCAAACGATGTGATAATAGCTTTGCATGTT 1019 28 100.0 32 ............................ TGCAAATAATGCTCTTCTTCACCACTGCGAAG 1079 28 100.0 32 ............................ ACCCCTAGACCCCGAAGAAAACTGCTATGAAA 1139 28 96.4 32 .................T.......... AAAAGGCTGGCGTTATTTCGCTTACGGAGTCG 1199 28 100.0 32 ............................ TGAATATGACATCCCTGTTGTTGTCGGAGAAA 1259 28 100.0 32 ............................ TGTGCGCTGGTCGGTCCCGCAGTTATCGCAGA 1319 28 100.0 33 ............................ AGTCATAACCTTCTTCAAGTAGCAACTGAAACT 1380 28 100.0 32 ............................ TTACTATAGAAATCTGCTTGATTCGGTTTCGG 1440 28 100.0 32 ............................ GTCAGTTTCAGCGAGCGAGTTTTCTTCGCGTG 1500 28 100.0 32 ............................ TGGCTTATATCAGCGAGTATCGCCTCAGCGGC 1560 28 100.0 32 ............................ AGCAAGCAAAGCGGGTATTGCAAGTAAAGCAG 1620 28 100.0 32 ............................ TTATCGTTGCTTTCTGCGCGGGCCTGGTTGAT 1680 28 100.0 32 ............................ TATAAAGAAGCTTACAACGCGGTGCTGTGTGC 1740 28 100.0 32 ............................ ATACTTAGCTCGGGCCGCTTCTGAACCTTCTG 1800 28 100.0 32 ............................ TTTGGAAAAGCAATAAACGTTAATGCAGTGAA 1860 28 100.0 32 ............................ GTCAGCATTCAAATAAACACACTGCAAAGCAA 1920 28 100.0 32 ............................ AAATGCGGGGCAAACTGCAATCAAATTTAGAG 1980 28 100.0 32 ............................ ATCGCACCCCCGTTGAAGTGGTGAACGGCAAG 2040 28 100.0 32 ............................ TCGAACAACTCGCGGATTACATCACGGCCAAG 2100 28 100.0 32 ............................ ACCAAGCGCTTTGCAATAAAGATGATGAGTTT 2160 28 96.4 32 ...T........................ ATAAACGTGTAGTGGTGGCTGCGGCCAATAAA 2220 28 100.0 31 ............................ ATAACACTAGGTCTTGCTTTAAGACGTTTGC 2279 28 100.0 32 ............................ TACTCCCAAGTAATGGCAATAGGCAAGTTAAA 2339 28 100.0 32 ............................ ATCCGGCGGAATCAGCGGTAGCGGGGGCCATG 2399 28 100.0 32 ............................ AAGTTAAGGGCGGTTCGCTGGTGTCTGAGTCG 2459 28 96.4 32 .............T.............. GGTGCGAAATACATCACCGACAGCCTGGGCTA 2519 28 100.0 32 ............................ CGATTCTAATGGCGATGGTGTTTTAGATAATC 2579 28 100.0 32 ............................ TTTGGAGTCGTATGGTCGTATCAGCGCTTTTA 2639 28 100.0 32 ............................ TGGCAAATTCTTTAAACGGCTTTTGCTGAGAT 2699 28 100.0 32 ............................ AAACCGTCAGGCAACGCAAAATAAAGAAGTTA 2759 28 96.4 32 .................T.......... CAATGAGCTATAAAGTTAGAAAGCTTGGTGAT 2819 28 100.0 32 ............................ TATCAATTTGGAGCATGTAAGCGCCGCCGGTG 2879 28 100.0 32 ............................ TTGTCTCGGGTGCGGGCAGGGTCGAAACCAAT 2939 28 100.0 32 ............................ AGCCAAAGGCACGGGGCGCTTCCCCTAGATGA 2999 28 100.0 32 ............................ GTTTAAATTTCTGATGCACGATAACAACGGGC 3059 28 92.9 39 ................AT.......... TTTATAATTTATAATTTGTGAGCCATGATTGTCTCTAAT 3126 28 75.0 0 ...T.....T...T.....C....TC.G | ========== ====== ====== ====== ============================ ======================================= ================== 53 28 99.0 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : | # Right flank : GTGGGTTTGATGTTTTTGAGTTGTGTGTCGTTGAGTGGTTTAACCGTTTTTGCCATATCTACTATTCCCTGAAGGCCTTTAAACTTAAGGCTTTGGCGCAGCGACGTACTACGAGAACGAACACTATGTACTAACTTAGTACATGAAGCAGTACATAAACAACTGAATTTCAAAAAACGTGGGCGTACATTACAGGCATTAAAAAACCCGCTAAGTCTTTATTCTCAGCGGGTTTTAAACGTTTTCGAACTTAATCGAACAGTGAAGTGGTGGAGCTGGGGGGATTTGAACCCCCGTCCGGAAAACCTCGACCATCGGTCCTACATGTTTAGTGTCGTCTTTTGGTTAACCTTTGAGTCTCGGACGCACACGATAAACAAAGGCGAGGCCGCTTAGTTTTAACCCTTCAACCCCGGCCAGGGTTTCCGTAGCGAGTCTGTGTAGGGTGACACTTCAGAACCGGGTCCACAGACATACACCGGAGAAGTGCTAGCGGGCTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //