Array 1 6117-4828 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBTK01000001.1 Streptococcus thermophilus strain FAM 13496 FAM13496_scf0001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6116 36 100.0 30 .................................... AGAAACGAGAAAAAAGATAAAAAAATTTTA 6050 36 100.0 30 .................................... AACCATCATTTGATGCTGCCATGTAGTTAT 5984 36 100.0 30 .................................... AATAAGGAGGAAACCTCTGTTCTTTCAATC 5918 36 100.0 29 .................................... CTTGCAGAGATGCACATGCAGTTAAATAT 5853 36 100.0 30 .................................... CTTACTATGACATGTTCAAAAAGCAACTTC 5787 36 100.0 30 .................................... ACTGAATAGCCAGTTTCACTAGTGTTATCA 5721 36 100.0 30 .................................... CTATCATCCGTGATATATAATATACATATA 5655 36 100.0 30 .................................... AAATGTCTCTAGCAACGATATTAAGCTATA 5589 36 100.0 30 .................................... ATTCCAGTATTGAAAAGATTAGATGAAGTA 5523 36 100.0 30 .................................... CGTGTCGAATATGACGATAATGACGATGAC 5457 36 100.0 30 .................................... CTCCTCTTAAAAATTATAAAATTTCATAGT 5391 36 100.0 30 .................................... GAAGAGAAGCAAGAGCAAATTGAAAAGATT 5325 36 100.0 30 .................................... TCATATATCGTCATTTGTTCTACTTCATCA 5259 36 100.0 30 .................................... TAATCCAAAGAAACATAAATGCTAATGAGC 5193 36 100.0 30 .................................... TTCATTGTTTGTTTACTCCTAATTTTTCTA 5127 36 100.0 30 .................................... AATGTGCTTAACATTTCTGATTGCGCCTTC 5061 36 100.0 30 .................................... TGCTTTCGTCAAAGGTTGAGTTCGCAATGC 4995 36 100.0 30 .................................... AATAGATAGTGAAACTGATACCGTCACTGT 4929 36 100.0 30 .................................... TGGAAAATAGTTAAAATAAAGAAAGGAAGT 4863 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.7 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAACCTCAGTCAAATTGAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCTTGGTCTGTGAGTCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTACCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 52517-54135 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBTK01000005.1 Streptococcus thermophilus strain FAM 13496 FAM13496_scf0005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 52517 36 100.0 30 .................................... AGAATACAACATTGTCTTAATAGGAGACAC 52583 36 100.0 30 .................................... GAATCATGATTGGTTTATCTGTGGGCTTCA 52649 36 100.0 30 .................................... AAAGAAATTAAAAAAACCTAGCGAAGCACT 52715 36 100.0 30 .................................... TTCGCATAAGACTTCTTCAAACCAAAACAT 52781 36 100.0 29 .................................... GTCCATAGGTATTTCCCTTTAATTAAAGT 52846 36 100.0 30 .................................... TAGAGATGACGACGGACTACCTGGCAAGAA 52912 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 52978 36 100.0 30 .................................... CTTCTTAAAATTGAATAATTCGAAGCACAT 53044 36 100.0 30 .................................... AGGTAACATTGGTTCAACAGCAGTCTAATT 53110 36 100.0 30 .................................... TCGTTACCTTGTCTTTGCAAATCACGCAAA 53176 36 100.0 30 .................................... AATGAAGAAGCCGATTCAAGCTCAAGGGTC 53242 36 100.0 30 .................................... TATTTCTGTCCGATACGAAGTATCAGGGAC 53308 36 100.0 30 .................................... TACGCCCGTTTGGATTGAACATGATAGAGC 53374 36 100.0 30 .................................... GAGCCTACTAATGATTACATTTTGAGGACG 53440 36 100.0 30 .................................... CCAAAGAATGGACCACCTTAATGAGAATAT 53506 36 100.0 30 .................................... TTTCAAAATCTTCGAATAGGCAGTCGAGCA 53572 36 100.0 30 .................................... AAAATGTACAAATTTTCATGCTAGGGAATA 53638 36 100.0 30 .................................... TACAGCTCTTGGTTTCGTCTATCCTTATGT 53704 36 100.0 30 .................................... CGCTAGGGTCTCTGGTGACGCTGAGGTCTC 53770 36 100.0 30 .................................... CCTGACGCATATGGAAATCCTAACGGTCAG 53836 36 100.0 30 .................................... AAAATCATCTAAATACATGTGTGTAACAAG 53902 36 100.0 30 .................................... AAGCACTGGACGACAAATAAATAATTGAAG 53968 36 100.0 30 .................................... GAACAAGAAACTTATGAAGTCGAAAACCGA 54034 36 100.0 30 .................................... CAACCCAGACATGAATGTCATTAGATATGT 54100 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTGAAATGTGAGAAGGGACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAATCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //