Array 1 4011683-4012250 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009769.1 Pectobacterium brasiliense strain BC1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4011683 28 96.4 32 ...........T................ TGTTGCGATTTCGGCGTCAAAAAACCGACCAC 4011743 28 92.9 32 ..........AT................ AGCAGGATACACATAAGGGTCACGGCGGCACG 4011803 28 100.0 32 ............................ AGGATACGCGGCAAGCGGCGTATGGTCAGCCC 4011863 28 100.0 33 ............................ GAGCATATCCTTTCAGATTTGCGGCTTTGGGAA 4011924 28 100.0 32 ............................ TGACTGACGCTAAATCCAACATTTCCTGTTCA 4011984 28 100.0 32 ............................ TACACCTACCAGCTAATGGTAATCCGCACCTG 4012044 28 100.0 32 ............................ AACAAACCAATTAGTGAAGTGATTGCGGAGAT 4012104 28 92.9 32 ...........TG............... GCGCTGCCACCCTTCGGATCGTTGTCGAGAAT 4012164 27 92.9 32 ...........T..-............. TCAACTGTGCACTGGGGATCGGGGCTATTTCA 4012223 28 85.7 0 ...........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.1 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : ATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCATTCGATTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCGATAAATGAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTTATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGTTTTTTCGGGGAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACGG # Right flank : AATAAAACGCAGCAAAAGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCGGTCGGGCTAGAATGTCTGGGGTTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCACTTTCACCAGATGCTGGGAGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGTCAGATTCTGTCGCAGAACAAGAGTG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4020113-4018179 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009769.1 Pectobacterium brasiliense strain BC1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 4020112 28 100.0 32 ............................ ATTGTGAACGGCAGAGGTAAAACGGTCCCGGA 4020052 28 100.0 32 ............................ GATCCGCGTCAGCGGGGCGGGGCGCTGTACTG 4019992 28 100.0 32 ............................ AAGCCAAATTATTTAATGATTGAATGATATTA 4019932 28 100.0 32 ............................ TGTAACCAGCCTCGGATTTCTTTTCTGGCTTC 4019872 28 100.0 32 ............................ GGCATCAACGGTTAACCCATACAACGACAACT 4019812 28 100.0 32 ............................ GCGAAGAAGTCCGGTGAGATTAAAGCGGGTGT 4019752 28 100.0 32 ............................ TTTTTGTACCATAACGCTCTGTGTCGCTGTGA 4019692 28 100.0 32 ............................ GTTACCAGGAACAACCCGTTAATTTTTGGATT 4019632 28 100.0 32 ............................ AGATAGAAAAATTGCTAACGGTCTTTCTTGTG 4019572 28 100.0 32 ............................ CCCAAAATAACCCGTTCGCACCTTTCTTCTTG 4019512 28 100.0 32 ............................ TTGATCCCATGCCGTTAATTATACGGACAATT 4019452 28 100.0 32 ............................ CTGAAGGACGGCCATACGACGCGGGGCGATGC 4019392 28 100.0 32 ............................ TTGTAGCTGTTCCACGCATCGCGGCATTTTTC 4019332 28 100.0 32 ............................ TCAACGAGTATAGCGCCGTAGTTCGTATAAGA 4019272 28 100.0 33 ............................ GAAATGCAGAAGCAGCAGGCGCAGCAGAAGCAA 4019211 28 100.0 32 ............................ TTTCATCGTCCGTGCCTCCGATACCTGCGAAG 4019151 28 100.0 32 ............................ TGACAGCACTCGTCAGTGAGATGTGCTTTAAC 4019091 28 100.0 32 ............................ CGCATCGAGAACGAAACCACGGAACGGGAGAG 4019031 28 100.0 32 ............................ TGAGATGAAACTAATTCCTAGGCCGTTCGTGT 4018971 28 100.0 32 ............................ GTCGAAGCATACGCCCTAAAAAAAGCAACTGA 4018911 28 100.0 32 ............................ GCCCAATCCGAACGATCCCTCACCGCTATTTG 4018851 28 100.0 32 ............................ ATCGGCTGGTTTTGGTTTGATGGATCGCGGTC 4018791 28 100.0 32 ............................ GGGGAATTCATCTTCCAGCTTCATTGTTGCTG 4018731 28 96.4 32 ...........G................ TGTTACCGCTCAGCGCAATAATCAGCGTTATA 4018671 28 100.0 32 ............................ TAAATATGTGGGTTTCTGCTGCGTCAACGTTT 4018611 28 100.0 32 ............................ CTCACGCGTACCCGAAGAAAGAAGTAGGCTGG 4018551 28 96.4 33 ...........C................ ACGTTTTGAACGGCTCCTCTTTGTTTGCGATGA 4018490 28 96.4 11 .............C.............. CTCGACCTGCG Deletion [4018452] 4018451 28 78.6 32 CGG.....G.A.G............... TGATGAGGATCGGCTCGCTAAAATCGGATATG ACTAC [4018435] 4018386 28 96.4 32 ...............A............ AAGCCAAGAGCAACAACTCGCCAATGATCCAC 4018326 28 100.0 32 ............................ GTGGCAGCAAAATTACCAGCCACAGGCTACGC 4018266 28 96.4 32 ...........G................ ATTTCGATCCCCGTTGAAGCGCCGCCGCCACC 4018206 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 33 28 98.2 31 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTCCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTGACATATTCGACACGACCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATAGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAACCAGCCTATCACAAATATTCTGGGAAAATGGTGGCTGCAAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAACAATCAATGAGTTACAGCTAAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CTGTCTTAAGCGCCATTATCTGGCTATTATCGAGGTAACACTATCGTCAGTATTTGATGCGTTATCGTCGTTAAATAACGTGTTTTTGATTCCCCTTTCTCGTAAAATTTTTAAGTAACGGGTTTCTTTGTGTGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATATGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCTGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 4028750-4029196 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009769.1 Pectobacterium brasiliense strain BC1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4028750 28 100.0 32 ............................ CGTAGCGGGAGAAGGCTCTCCCCGTGGGGTAT 4028810 28 100.0 32 ............................ TGAATATGTCATTCAACATCTGCCGCAAATCC 4028870 28 100.0 32 ............................ TGAACGCCAGTGCCGTATTTTAAGTCCGTAAC 4028930 28 100.0 32 ............................ GCATTGGCCATGCACCAGAAGCTGTTACGGAA 4028990 28 96.4 32 ...........C................ ATCAGATAATTTCCTCATCAAACAGCAGTTCA 4029050 28 92.9 32 ...........C.C.............. ATCGAGGACGAGCTTTGCGCGTCCATTGGATA 4029110 28 92.9 32 .......A.........T.......... ATGACTGATTTATTGAGCAAAGAAAGGATGGA 4029170 27 75.0 0 ............GC......-..C.GCG | ========== ====== ====== ====== ============================ ================================ ================== 8 28 94.6 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCTCTATCCACGCTGGAGCAAGCGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGTTCAAGAGCAGCGCTGAACGATTGCGCCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCAGAAGCCGCAGCACGCATTCCCGATACGGTGGAAAAACGCAGCACCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAAATGTTCTTCGTGTTTGTGGAACATGGCCCGTTACAGGATGCACCTATCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGGTTTTCGAGATAAAATGAACATTCTCTTTAACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : GATTATCGGGATGCGTCGCTGCCGCGACGCATTTTTGAGGGCTACTCCCCGTTGAGGGTAACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTAGTGATGGGAATCGTTAGACTGTTGCCGAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAACGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACATGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //