Array 1 75476-75149 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVJP01000171.1 Serratia marcescens strain 374_SMAR 726_75478_1336324_432_,...,416+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 75475 28 100.0 32 ............................ GTTTTCGCCTGTGGCCGCTCAACCGGTGATTA 75415 28 100.0 32 ............................ AGTGCGGCCGTCAGCGTTTCGCTGCCGGTGCG 75355 28 100.0 32 ............................ AACAAGGCCGCCGCCGTTCCTGAAAATACCAC 75295 28 100.0 32 ............................ TGATGAGCGGGGCGGCGCATCCATCGCGCAGT 75235 28 96.4 32 .................T.......... AACTTCGGCGGCGCGCGCATCACCGGCAAAAT 75175 27 85.7 0 .............C.A....T..-.... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GG # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACTGGGAAGCAAATACCCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCCTCAGCGCCGTTGAGCGATCTCCTACCTGGCAGTGAAACGCCAGCGTCAGTTCCCCTTTGCCGCGTAGCGCCTTGGCGCCTTTGCCGGCCTGGTGTTCTGCCATGCGGCGCGCCACGTCAGTGGTGATGCCGGTGTACAGCATGCCGCTCGGCAAACGCAGCATATAGAGGTGCCAAACTGGAGTTGTCATCGTTCTTCCGAATTAGATAAGGCCACAGTCTGTCGCTAGAGTGCGGCATCTTGCTTTTAATTAATTGACTTTAAAATATAAATTCATAGAAAGTAAACGTCTTGAGTCGGAAAGGTACTGGCTTTCTTATCATCAACTTGCCCACGTTACTCGTTCAAACATCTACTGCCGTACAGGCAGCTTAGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1092-4 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVJP01000017.1 Serratia marcescens strain 374_SMAR 92_11199_208142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1091 28 100.0 32 ............................ TATCAGGCAAATCTGACGGCACGCTGCCCGGA 1031 28 100.0 32 ............................ CAGCCGCCCATCTCTTTAAGGGCAAGCAGGGA 971 28 100.0 32 ............................ TAGCCGTCCGCCCCTTCTTCGCACATCGCGTC 911 28 100.0 32 ............................ CGGATAGTTGCCGCCGGTGATGTGCAAGAGAT 851 28 100.0 32 ............................ AGGCAATCATAGACATACCGAACGGCCAGCGT 791 28 100.0 32 ............................ TGAACCAGGCGTATCGAGAAACAGGCGAACAG 731 28 100.0 32 ............................ TGTAAGTGGCGGTTACAAGTTGGCAAGTGGCT 671 28 100.0 12 ............................ CACATCGCCCGC Deletion [632] 631 28 96.4 32 T........................... ACGGTATGCGGCTGACGTTCGGCGAGGCATAC 571 28 100.0 32 ............................ AAACACATGCTGCGGCTGCGCCGGGAAAATAT 511 28 100.0 32 ............................ TGCTCGAACTAAACGGAAAGATACCCGCGACA 451 28 100.0 32 ............................ AGGAATCGGCGGCAGGTTTTCAAGTCGGCGAA 391 28 100.0 32 ............................ AAACAGCTTGCTGTGCCGTGTTACTCGCGACT 331 28 100.0 32 ............................ GACACTGGGCCGTCGTTCCAGAGCATGAAATC 271 28 100.0 32 ............................ CGTCTCCGCCGTCTGATATTGAACCGTAAGGC 211 28 100.0 32 ............................ TACTCGACTAGTCGCCCGCGTGCGGTCGCCAA 151 28 100.0 32 ............................ TGGCTGAAATATCTCATAGCTTGCGCCGGCCA 91 28 100.0 32 ............................ GTTGACGAACACCCAGCGCGGCAACTGCTGGC 31 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 99.8 31 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GATGCGCTGACGGCGCTGGGGGAATTCGACTGGCTCAAAGGACTGCGGGACTATACCGACCTATCGCTCATCCAGGCCGTGCCTGCTGAGGCGGTATTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTAGAGCGTATACGCCGCCGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTCATTGCCTTTTATTGCCTTGAAAAGTCTCTCCACCGGACAACATTTTCGCTTGTTCGTGAAACAGGGCCAATTACAGGAAAAACCAACGCCGGGCGTTTTCAGTTTTTATGGGTTGAGTGCGTCCGCTACGGTACCTTGGTTTTAACCCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAAGTATTTGCCTGTTGTTCTTTAATAATCAGATCGTTAGTGATTTTTTTGTTCT # Right flank : AGTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10906-9915 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVJP01000017.1 Serratia marcescens strain 374_SMAR 92_11199_208142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10905 28 100.0 32 ............................ GTTTGATAACCGAAATAGCCACCTAATACGGT 10845 28 100.0 32 ............................ TCTGCGTGTGGAATACACCAGCGTGATGGCAC 10785 28 100.0 32 ............................ TATGTCGATCGTTTGGTGTACGCGCAATGACG 10725 28 100.0 32 ............................ GGCCATCTTCATCAATACGCCTTCCATGCAGA 10665 28 100.0 32 ............................ CTAGTGGGGCGGTCACTTAAAGATCTGCATGT 10605 28 100.0 32 ............................ TCAACAAGCCGGACTGGGCTAGGTAGATATCT 10545 28 100.0 32 ............................ GTCCGGGGTGGTCTTGTCCGCTTCTTTCTTCT 10485 28 100.0 32 ............................ GGAGAGTGGGGATGGTCACGATACCAGACGAT 10425 28 100.0 32 ............................ AGCGAATGCTACGGAAACTCTAAGCTATGATT 10365 28 100.0 32 ............................ ATGCTGCGCAGAACGGCCAGGCTATCGCTACG 10305 28 100.0 32 ............................ ATAGCGCAATCCTTCACGCGATTAGCGTATGC 10245 28 96.4 32 .........................C.. TGAACCTCACGCGCGCGTGCGTACTGTTGCAT 10185 28 100.0 32 ............................ AGCACACCGGCAACCCAGGGGGCATAGTCCGG 10125 28 100.0 32 ............................ CATGAATCCGCTCTGCTGGCCGATGTTTCAAC 10065 28 100.0 32 ............................ AGAACAGTGAGCTTACACAGGAAGCCGTTGAA 10005 28 100.0 32 ............................ ACAACGCCCCCGTCCAATTATCTCGGGCAGAT 9945 28 96.4 0 ....................A....... | G,A,A [9918,9922,9924] ========== ====== ====== ====== ============================ ================================ ================== 17 28 99.6 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTGAACAATTCAGTTCATCTGTCGTGTCTATGCGTCGCAATGAGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCCTAAAATGTAGAAATGTCACCTTATTCTATTCTTGGTTGCCGAACCCTTTTTTGAATGCCATTCTTAATTGATTGATTTAAAATAATATTTTTAAACACTTTAAAAAAGGCTTTTTGGACGGGTATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAGTATTCAAC # Right flank : AAGTAATATGTATTTGGCTCATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTGTCCGATTGATGGATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTGATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATGCCCTCTCTTCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGATGAAGGAAAACAGTCCCTGTACTGGAATATCCCCATTGCCAACACCACCACCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGCGGCGGCGGGACACCCCTATTTGCTGCCAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //