Array 1 118827-117026 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOYL01000001.1 Salmonella enterica subsp. enterica serovar Oranienburg str. 701 SEEOR701_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 118826 29 100.0 32 ............................. GGACTGACGGATAAATCATATATTGAAACGGG 118765 29 100.0 32 ............................. TGCTCGGGGCATGTTTCTAAACGCCCCTCGGG 118704 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 118643 29 100.0 32 ............................. AGCTGGAAGCCGCAGAGAAGCGCATAGCAGAA 118582 29 100.0 32 ............................. GCATCCGCTAGCCTCACGTAAGTTAAAGTTAA 118521 29 100.0 32 ............................. GCGCGTAACGCCACGCTATCAGTCTGGAACAT 118460 29 100.0 33 ............................. GGATCGGCATGGTTATTCATTTTCACGGCTTGC 118398 29 100.0 32 ............................. CCCGATATACAGAATTATCGGGCATCCATGAG 118337 29 100.0 32 ............................. GCGCTGAAGAATTACTGGTTGGCGATACGGTG 118276 29 100.0 32 ............................. CGTTAACTAAAACGTACAAAACAGGGAAATAA 118215 29 100.0 32 ............................. GTGGCTTGACGTGACACAGGGGCTGCCGTGGT 118154 29 100.0 32 ............................. AGTTTCCCAATCTTTCGCCACGCTGGGAAATC 118093 29 100.0 32 ............................. GAATTTTTACGGGTGATATTTTTTCTCATTGT 118032 29 100.0 32 ............................. GCGTCAACGCGGTGAACCGGCGCGCCGAGGAA 117971 29 100.0 32 ............................. GTGTTTTCTGCCGTCCACCGCGTGGATGGACA 117910 29 100.0 32 ............................. TGACGCTCGGTGATTCAGGGGCAACCATTGCG 117849 29 100.0 32 ............................. GCCAGGCCGGGATCGGTGGGGTTATCGACGAG 117788 29 96.6 32 ............................C ACGGCATCATCAACCGAGACAAGCCCCAACTC 117727 29 100.0 32 ............................. ACCGAGAACGTTCTACCTTTGATTACCTTCCC 117666 29 100.0 32 ............................. GACGCGTTAACTGGCCTGCGTGATGCTATCGA 117605 29 100.0 32 ............................. AATTATTTATCAGTCCCATAGTTGTGTCTCTT 117544 29 100.0 32 ............................. CACTCCGCGCCGCTGGCATCCATGTTATCGAA 117483 29 100.0 32 ............................. AAAATTATCGAGGATGAATTTAAAACAGGTGC 117422 29 100.0 32 ............................. ATTTGCCCCTCATCTTTCGCCCTTAAGCCGGG 117361 29 100.0 32 ............................. GTACGGAAATTGTAAGCCCCTGGATTCACAGT 117300 29 100.0 32 ............................. CTCCAGCAGTTGGGCATCAACAGGAGAAACGG 117239 29 100.0 32 ............................. GCAGCGCCGGTGTGGCACTTGCATGAATCGTT 117178 29 100.0 32 ............................. GCCGATATGGCTAAAACGGCGCTTGAGAACAG 117117 29 100.0 33 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAA 117055 29 86.2 0 TAA.........T................ | A [117028] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAGTCGGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACTTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGTTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGTGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 135540-134963 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOYL01000001.1 Salmonella enterica subsp. enterica serovar Oranienburg str. 701 SEEOR701_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 135539 29 100.0 32 ............................. ATTATGGACGACAGCTATATGAAAACGCATTG 135478 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 135417 29 100.0 32 ............................. GCGAGATTAAAGCGGGCTAACTATTTGTGAGA 135356 29 100.0 32 ............................. TGCGCAGATTCCGAACCGCTTACGATGAAGTG 135295 29 100.0 32 ............................. TTTGCCTGGGCTGGTTCGCCGAAAACGGCGCG 135234 29 100.0 32 ............................. GCTGCTCTCTCACGGGGGTGGCCTTTTTTATT 135173 29 100.0 32 ............................. CGAGCCCAAATAAGCCGCCAGGCGTCGCGAGA 135112 29 100.0 32 ............................. CCGGTGCTAAGTGGGTGCGTCTGCGTGATTTT 135051 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 134990 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGTGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTATTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //