Array 1 716598-715926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLED010000001.1 Clostridium tagluense strain CM024 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 716597 30 100.0 36 .............................. AATCATGCTCCCCATTAAAGTATATGTCTGGTTCTT 716531 30 100.0 35 .............................. TTGCTTCAAGTCTTTTGTTGTACTCAATAGTGCTT 716466 30 100.0 34 .............................. ACATATATATCTTTACTTGGAACTTCTATAATTA 716402 30 96.7 36 ............................A. TGATAAGAACGAAGGACATGGAGTAGGCAAGAGCGG 716336 30 100.0 35 .............................. TTATCTACCATAGTTGCCAAACGATCACATTCTTT 716271 30 100.0 25 .............................. TTCTCGAACCATGAACTCATAGTAA Deletion [716217] 716216 30 96.7 36 .......................C...... ATACTAAGTATTGATGATTTAGCAGAAGTTCTACAA 716150 30 100.0 34 .............................. GTGCATACATTTATGCATCAGATTTTTATTATGA 716086 30 100.0 36 .............................. ACTTGCAACAATAGGTAAGCTAGTAGGTAGAGGAAA 716020 30 96.7 35 .................C............ GAGAGTGAGATAAATAGCTCTACCATATTTACTTA 715955 30 80.0 0 .G.......C..G.......T.T..C.... | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 97.3 34 GTTAGTACTTAACATAGGTAATGTTTAAGC # Left flank : GATGGAGAATTTAAGTGGTTTTGGTGAAAATATTAGCGAAACTTTGCTAAAGAATTGGAGCTACTTCGATTTGCAACAGAAAATTAAATACAAGGCAGATGAAGATGGGATAGAAGTTAATTTTATAAATCCAAGATATACCTCACTTAGGTGCAGTTCCTGTGGGAACATAGATAAAGAAAATAGAGATTGTAAAAATAACCAAGCAAAATTTGAATGTATTGTTTGTGGGCATAAAGAAAATGCAGACATAAATGCATCTAAAAATATTTCTTTACCAAACATAGAAGAAATTATAAAAGAACAACTAAAAACTAAATAATGTTACCAACCATAAAGGGCGACTTAACGTCCTAGAATCGAGTAGTACCAATAATCCTACCTAGTAGTGTGGCAACTCTCGGTAAACCTCCAAGTTAGTTGGGAAGTTTTATACGGATGCTAGTAATAGCAGGGTGTATAGAAACAATTCTAATGTTAAGTTCGGCTTAAATACTATG # Right flank : TATGCTGTAGAAAACTATGATGACACAACTTGGGCACCTGAAAAGGTGTCTTTTTAATACAGAAAAGATTTGAGGTGCATCATGAATGATGATGGATGTGTAGATAGACATAAGAGGATTGAAGAAAAATTAGAAGCAGTCCTAAATCTAGGGCATACTAAAGAAGCAGTAGTAAAGATTGCAGATATTCCTTTAGAAGCCGTAAAGGTAGAAATTGCTCCAGCAATAGTAAAATACTTTGCACCGGACGGAATAACAGAATTACAGCCAATAGTAGCACAATAAATTTAAGCCTGAGATTAGTTTAAAAGCTAGCTTCAGGCTTTTTTATTTACCTAAATTTACAAATATTGCAGGAAATAAAAGCTTTATGTTGAAATTGTTAGGTGTATTAAATCATGAGGGGGTGAGAATAATGAAAAGTATTAAAATCAAGTTTATGTCATTTTTAACTGCATTGTTTATTTTGTTAGGTACAAGCTTACCAACGTTGGCGGTTA # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTACTTAACATAGGTAATGTTTAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 111-1057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLED010000049.1 Clostridium tagluense strain CM024 contig00049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 111 30 96.7 36 C............................. ATGATTTGTTTTAATTTATATTATTATATTTATATA 177 30 100.0 36 .............................. AAGTCCTGAGGATTTTCGGTTAACCACCCATCTTCT 243 30 96.7 34 ..........G................... GGAAAGAGAGTATCCGTACTTTGAAAATGATGAA 307 30 100.0 35 .............................. TTTATAAAGTTGGGTGAAACTCCAAATGCTGCTGC 372 30 100.0 34 .............................. TTGTTAATTGCAATGCTTTAAGCTGAGTTGTTAT 436 30 100.0 35 .............................. AAAGCCATAGCAGACAAAGCAGCTAAAGCAGAAAG 501 30 100.0 35 .............................. TATACTAAATAATAACAATTTGGAGATGTATTAGT 566 30 100.0 36 .............................. AACCACCGCAACCTTAATTTTTCCCATAAGGACATC 632 30 100.0 36 .............................. TCTATTAGACACCACTCACAATATATATATGCTTTG 698 30 100.0 36 .............................. ATTATCCACGCTGAAGGCTTAAGAAAAGGTGTAGTT 764 30 100.0 36 .............................. TCTCTAAAGTGGAGCATTCTTTGTGTTCCTGTGATT 830 30 100.0 35 .............................. AATTGGATACAAACCAAGTCATCTATAGGATTCTC 895 30 100.0 36 .............................. TTCTCTGGAGCTAATAAGTATATCAACCTGCTTCTT 961 30 93.3 36 ................A............T GAATATTGTTGTGCTTCTAGCTCTCCTGGTGCTTTC 1027 29 86.7 0 ................T.T..-.......T | C,T [1043,1055] ========== ====== ====== ====== ============================== ==================================== ================== 15 30 98.2 36 GTTGAACCTTAACATGGGATGTATTTAAAC # Left flank : AAAGATGATGAGTTAAAAGTATTCATCGACTTTAATTAACATTTTTTTACAAAAACTTAAAAATCAATTTTTTGCCTAAGAGAGAGAATACACAAAATTATTTACACGCCC # Right flank : TGAATATTGACTCCCTCACTTAAATATAATATTCATTATGTGTAGCTAAAATAATGTACACATGAAAGATGCAGTAGCTAATATTTTTTAGACTTGAATTATTGAAATCTTTTTTAGGCTATAAGATAAGACAGAATAATAAAGCAGGTTATTAATAAATATATTTATAATGAGAATTGAAGATTTTAAAATTTGATAATATGACAGATGAATGGTTAGACTTTGTTGTTTCATGCAGGAGAGGAATTAGTTATACCTATGATATAGTAGAAGGACCAATGGCAGATGATACAATTTGGGATTATATAGAAGACTATATAGATGGAATAATAACTAGGGAAGCCTTTTGGGTGTTAGTGAAATTTAAATATCCAACACATCAAATAGCCTTTTGTAATGACAAATCATTAGAGAATTTAAAATATGAAGGAGCTTATTCATTATGATAAATCTATTTTTTGAAGATGAGGAAATCAAGGAAGATGACCTATATTTTATGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGGGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 133626-134573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLED010000006.1 Clostridium tagluense strain CM024 contig00006, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 133626 30 100.0 36 .............................. CTGGAACGGCTAAATGGAGTGATGCAACAGCAGATA 133692 30 100.0 34 .............................. TCGTTAACCCAATTATTCTTTGACCTAGGTGGAT 133756 30 100.0 35 .............................. TATCCTTCTAGGTTTATACCAATTGTTATAGTATT 133821 30 100.0 36 .............................. TATTTATAGTTTCATTTGTATAACTTGATACAATCA 133887 30 100.0 35 .............................. TCATTATCATATGGGGTGAATACTTCCTTTCCATC 133952 30 100.0 35 .............................. AATCCTAACGCTCGCATAGGTGCTCCATACTTAGC 134017 30 100.0 35 .............................. CAAGCTAAGTCGAATTGAGTACAACGTAGTACCTT 134082 30 100.0 34 .............................. TAAAAATGGCAACCCACAAAGTCATATCCGTTTG 134146 30 100.0 35 .............................. TTGACCTCCCTTTACTTTTTCCTTGCTTTCTTTCT 134211 30 100.0 36 .............................. ACGTCTACAACACTTTTCTGTGCATCTGTTAATATT 134277 30 100.0 36 .............................. TTAAATTTAACTAATATAGCATTTTTAGAATCTTCT 134343 30 100.0 36 .............................. AACATTCCTAAACTTGTATGCTGCAAGTTAATAGCA 134409 30 100.0 37 .............................. TCAATATTATTATTCTTTTCTTTAACCATATTTTTAA 134476 30 100.0 38 .............................. TATATATAGTTTGGAGATGGTGCTACATTATCCATTGC 134544 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 100.0 36 GTTGAACCTTAACATGAGATGTATTTAAAC # Left flank : AGATTATTATTTTTAACATTTATAAAACCAATAATTAATGGAACTGGGTTTGATTTTAAAGAAGTTCAAATATCAGAAGAAAAAAGATTGGATTTAGTAATAACTTATAATAAATTCAAATATATAATTGAAATGAAAATATGGAGAGGCCCTAAGTATCATGAAGATGGGGTGAAGCAACTTTGTGATTATTTAGATATCCATGGTTTACATAAAGGATATTTATTGGTATTCAATTTTAATAAAAACAAGGAATTTAAAGAAGAACTAATAAATGTTAAAGGGAAGGATATTTTCTCAGTTTTTGTTTAAGAAACTAAGAATTACCCAACCGTTTAAAAACAAATAATAGCCTTAAAAGCAATAGAATCAAAGCTTTAAGGCTATTATTTATATAGAGTTTCTGAATTTTCAAAATGGCTGGTGAAATTTCTGCGAAATCTTGATATTTGAACTGTTTAGTGGTATTATTAATTTTAACGAATGGCTTAATTGCATTG # Right flank : CTTTGGGTAGTTTTGCTTTTAATCGTAAGTATAGTTTGTATAAAGATAACTGCTAAGTGTAATAGTAATTTTCAAGACAATAAAGAACGTGTATAAGCGTGTAGTGATAAACATTATATTTTTAGAATATATATTAATAACAACTCATTTCCAGCAAGATTTATAGGAAGATGGTCGAAAGGTGTGTTTTACATATTTTTTATAGAACTTGAGCATAAGTATGTTTGATCATTATTAGGTATTTAGTAGCATTTATAGATTTTAAGGATTAAGAATTAGCAAACAGAAGGTGTTCACCGAGTTACTAATTTATGTAATTGGGTAGCATCGCCAGCTTCTTAAAAATAAAAAATAGATTTTGGGGATTGCAAGAGCTAGTAGGGTAAACAAATTACTTTATTAGCTCTTATTTTGTTTAAATGAAAAAATTAAAACTTACAAAATATAAAGATAAAAATGGTTTATATGGTACAATATATAAGAAGAAATTACTATAAAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGAGATGTATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 144611-144968 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLED010000006.1 Clostridium tagluense strain CM024 contig00006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 144611 31 100.0 35 ............................... TTCCTAATATATGTCCACACTCCTTTAACCTTACT 144677 31 100.0 35 ............................... AGGATTTCTAGGCACAATGGACTTAAGTTTTACTG 144743 31 100.0 33 ............................... GAGGTTGAGGATGTTACTGATTTAGATAATATA 144807 31 96.8 34 ..............................G ACATTTTACTAACCAAGGTAACAAATAAAGCTTT 144872 31 100.0 35 ............................... ATCATGCTCACCATTATAATATATGTCTGGGTTTG 144938 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 6 31 99.5 35 GTTGAACCTTAACATGGGATGTATTTAAACA # Left flank : AGTACCTGATAAACAATTTAAAAAAAATAGTAATCTCAATCTAAAATAAAACACATATGTGCATTTAGAATATAATGTACCCTATAGAGAGTGTATTCAAGGTGCTTTTTTTAAGTGATAATATTAATGCTTTTGAGAAAAATAAAAAATACCCATTTAAACCAACATAAATTGCTAAACCAGATGCATGGAATTAAATGTAATAAGTAAGATATGTAAGGTAACACCAGCTATAGCAATTATTGATGGTGAAGTGTGGATTAACAAAATGGATATTGTCTTTACAAAAACAAATAATATTATAAACTTAAGAAACTAAAAATTTACCAACCGTTTCAAAATAAAAAACAGCCTTAAAGTCAATAGATTCAATGCTTTAATGTTGTTTTTTTATATGAAGTTTCTGATTTTTAAAAATGACTGGTAAAATTTCTATAGAAGCTTGATGTTTCAAGTCTTTAGTGCTATTATTGATTTTAAAGAATGGCTTAATTGCATTG # Right flank : GTTCTTTCTCTAAAGTTTCTTCTAATAATTCTACGTTGAACCTGAGCCTATAAATAATTTTGTGTAACTAGAATAAAAAGTACTCTTTCTTGGCAATAATTGAGATAAGCTAATTATCAAATATTGTAAGGAGGAGTATTTTTATGTCAGATAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACCTTAACATGGGATGTATTTAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //