Array 1 65969-64065 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESF010000002.1 Salmonella sp. 32031103201600241SM NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65968 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 65907 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 65846 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 65785 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 65724 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 65663 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 65602 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 65540 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 65479 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 65418 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 65357 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 65296 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 65235 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 65174 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 65113 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 65052 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64991 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64930 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64869 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64808 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64746 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64643 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64582 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64521 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64460 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 64399 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 64338 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 64277 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64216 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64155 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64094 29 96.6 0 A............................ | A [64067] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83593-82100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGESF010000002.1 Salmonella sp. 32031103201600241SM NODE_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83592 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 83531 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 83470 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 83409 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 83348 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 83287 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 83226 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 83165 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 83104 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 83043 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 82982 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 82921 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 82860 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 82799 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 82738 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 82677 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 82615 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 82554 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 82493 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 82432 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 82371 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 82310 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 82249 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 82188 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 82127 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //