Array 1 2489205-2491393 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020917.1 Achromobacter denitrificans strain PR1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2489205 28 100.0 32 ............................ ATGCGGACGAAGGCGACGACAAGCCAGGGGAT 2489265 28 100.0 32 ............................ AAGCTGACGTTTGATCGCACGCTGGGGGATAC 2489325 28 100.0 32 ............................ CTGGTTCACGACGGTCGAGCTAAGTTGGTTGA 2489385 28 100.0 32 ............................ TATCCGGGCTGGGGAGAGATTCCGACCTGGCT 2489445 28 100.0 32 ............................ TTGCCGGCCTGCGCCTTCGACAGCTTCACGCC 2489505 28 100.0 32 ............................ ATCGCGACGAACGTCTTGCCCACGTTCGAATC 2489565 28 100.0 32 ............................ AAAGCCTAACCCGGTTAGGTTTCTATACCCTA 2489625 28 100.0 32 ............................ ATGGCCATCAGGTGCGCGGTGCAGCGTTCAAG 2489685 28 100.0 32 ............................ ACTCGCCGGGTCACTGGTAATCGCGGCGTTGC 2489745 28 100.0 32 ............................ TGGCCGAAATGGAAATTCGCCGGCTATGCGGC 2489805 28 100.0 32 ............................ TCTGCCTGGGCCTTCTTCGGCGGCCCATTCGA 2489865 28 100.0 32 ............................ AGTCGCGGAAAGTTCCAGTACGGGAGATCCTG 2489925 28 100.0 32 ............................ CTTCTTCGGCGGTGATGGCCGCAGCAACTTCC 2489985 28 100.0 32 ............................ TACCGATGCCCAGGTCGCGGAGTGGAGCGCGG 2490045 28 100.0 32 ............................ TGTGGCATTTGTGCCGGAAAGCCCAAAATGTA 2490105 28 100.0 32 ............................ TCCAGCGCGTCCCAGCGGCCCAAAGGTATGTC 2490165 28 100.0 32 ............................ AAAGAAGCCGCGCGTCAGTGGCTCGAATCCCA 2490225 28 100.0 32 ............................ AGATCTGGCACATCGACGGTCCAGCGGAACCG 2490285 28 100.0 32 ............................ ACCACGCCGGGTTGCTCGTCGTGGTCCACTTC 2490345 28 100.0 32 ............................ AACTTCGTGAACAAGGACGCGGGCTGGGTGAT 2490405 28 100.0 32 ............................ GTGCATCGGCGCAGTGAAAGCACGCTGAGCGC 2490465 28 100.0 32 ............................ ACGTCACGCCCGTTTTTTCTGCCCCATCCGGG 2490525 28 100.0 32 ............................ TAGCGTGCGGTCAAACGTCAGCTTGGCGGCCT 2490585 28 100.0 32 ............................ ATCCGGCTCCTGGGCCAACAAAGAGCAAACCT 2490645 28 96.4 32 .............C.............. TCCGTAGACGAAAAAAAGCCCGCCGAAGCGAG 2490705 28 100.0 32 ............................ TTCATCCCCCGGCATCGGGAACCCGTCCAGGT 2490765 28 100.0 32 ............................ GTCAAGACCTGCGACCGCTGCGAGCGGGAGAT 2490825 28 100.0 33 ............................ AGCGCGTCGTGCGGATGGACGGCTTCGGTTGCC 2490886 28 100.0 32 ............................ ATGAACACCGCCTACGCACCACGAATCCATGC 2490946 28 100.0 32 ............................ ACGCGCAGGTATCGCGCGACGTGGGGCGGCTT 2491006 28 100.0 32 ............................ AACCCCTCGTTCACTTGAGCTTGTTGCCCCTA 2491066 28 100.0 32 ............................ ACCAAGCCGGCAAGGAGAAGCGGATGGTCGTC 2491126 28 100.0 32 ............................ GCCGCGCCGGCGCGGTCGTCCGTGGCCCAGGC 2491186 28 100.0 32 ............................ GGCCGGATCGCTGTCGGGATGGTGCGCATGTA 2491246 28 100.0 32 ............................ AGGAGGTGGGAAACTCAAAATACCAACTGCCC 2491306 28 100.0 32 ............................ ACGATGCGGGTAAGCTGGCCGACAGTGTTCCC 2491366 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.9 32 GTTCGCTGCCGCATAGGCAGCTAAGAAA # Left flank : CGTCTTGCAGGACTTGATGGCCCTGCCATGGTTGCAAGGCATGCGCGATCATGTTCGCCTGACCGATCTGACGGAGACGCCGCCCGGTGTGCCGCATTGCGTAGTGTGGCGTCGCCAGTTCAAGACCAGCGCCGAACGGCTGAGGCGCCGACGGATGCGCCGCAAGGGTGAAACCGCAGAACAGGCCGCCGCTGCTATTCCCGACGGTGTGGAACGCCAAGTGGATCTGCCTTTCGTGCGCCTGAGCAGCGCGAGCACCGGCCAGTCGTTTTGCTTGTTTATCGTCCAGGAGCCGGCACACGAGGTTCGTGGGGAAGCGAGATTCAATGCCTACGGTCTGAGCCACGGGGGAACGGTACCTTGGTTTTGAACCCTTTTTTTCGCCTGGAGAAAAAGATCTTTAAAATCATAGAGTTATTAGTCTATTAAAAATTTGGGAGTAAACAAGGGTTGGCAGGGATGTTCTTTAAAAATCAGCGGGTTATTGTTTTTTTCGAATG # Right flank : AGTCCCACATGTGAACTGCCCTTCGAAGGTTGGACGTTGATCCAACTTTCGGAGGTTTTTACTGCGGGGGCGTATTTCATTGCGGTGTCGGGATCACAGTCCCCAGGCCGACAGGTCCGGGTGGCGAACCGCCGGCGCCAGCACGGGCTCCAGCGCGGCCGCGCAGTCCAGCAGCGCGGCGTCGGCGCCCGCGGGTGCCAGCAGCTGGACGCCCATGGGCATGCCTTCGGCGTCGTAGCCGGCGGGCAGCGCGATGGCGGCCGAGCCCAGGAAGTTGGCGGGCCGCAGCAGCTTGCCCAGCCCCGCGTGGCGGGTGTCGTCCGGATCCAGCGCCTGGGCGGCCTGGTCGCAGGCCGGCATCAGCAATGCGTCCACGCCGGCCATGGCCTGCGCGAAGGCGGCCATGTCGGCGGCGCGGCGCAACAGGGCGGCTTCATAATCGGCAGGCGAGATCCGGCCGCCCGCGGCGATGCGGGCCCGCACTACCTCCCACAGCGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //