Array 1 1972-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQL01000012.1 Cronobacter sakazakii strain MOD1-comp11 COMP11_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1971 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 1910 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 1849 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 1788 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 1727 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 1666 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 1605 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 1544 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 1483 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 1422 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 1361 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 1300 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 1239 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 1178 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 1117 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 1056 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 995 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 934 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 873 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 812 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 751 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 690 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 629 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 568 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 507 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 446 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 385 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 324 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 263 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 202 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 141 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 80 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 100.0 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : GGAGGAACGCCGCCAATTTCAGGAATGTATTTTCTGTTCCCCGCGCGAGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 76589-76440 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQL01000007.1 Cronobacter sakazakii strain MOD1-comp11 COMP11_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 76588 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 76528 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 76467 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : TCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCGA # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 370511-369505 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQL01000017.1 Cronobacter sakazakii strain MOD1-comp11 COMP11_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 370510 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 370449 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 370388 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 370327 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 370266 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 370205 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 370144 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 370083 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 370022 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 369961 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 369900 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 369839 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 369778 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 369717 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 369655 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 369594 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 369533 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.2 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 397419-396780 **** Predicted by CRISPRDetect 2.4 *** >NZ_NHQL01000017.1 Cronobacter sakazakii strain MOD1-comp11 COMP11_contig_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 397418 29 96.6 32 ....C........................ GGTGTGAAGCGGTTAGGCTTTTTTAAAGATCT 397357 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 397296 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGGGCG 397235 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 397174 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 397113 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 397052 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 396991 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 396930 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 396869 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 396808 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.1 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GGCGTGAATGTTC # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //