Array 1 11490-11649 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALKF01000146.1 Paenibacillus sp. OSY-SE Contig146, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 11490 28 100.0 39 ............................ ACCAAAGAACCGCCCATACGGGCCGCATAGCTAGTTAGG 11557 28 100.0 37 ............................ CCGTCGGTGAAATAAGTCTTTGCGCAGAATGTCTAAA 11622 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 3 28 100.0 38 CATTCAATTCCTCATAGGTACGTTACAT # Left flank : TAGTCACGGGCGGGGCCTAATTCCGGCGCTAAGTGGTGATGTGAAGCCAGCAGCGTGGCGGACATTGCATGGCTTATGAGTGGTGCAACCAGGCATAAGTGGTGCTAGTAGTACGTGTCAGAAAGGCTGAAAAAGGGTGGATGGCAATGAAAAAGGAGCGCCATACGCATTTTGCAGCACAGGTGGAGGTAACTCGCATATTCCACTGGAAATCGTACAGTGAAATGTACAGACTTTACGTCCAAACGGCACTTTGACTGTATTTCGTACAGCGGATTTCACCGATCTATAGAGATTTCCGCTAAATGAGCCCCAATCCACTGGACGAATTCCAATGGAACCTCTCTGCCAAGCTATAACCGTGCTGTTTCATTGGACAGAATCCAATGGAGTCTAGACTATCAACACAGACGAAGCGGTAGTGAGTCTATTCAGCAGATAATATTAAGTGGCTAAATACTCACCTATCGCCTATAAAAAGTCTAAGAGAGCGAGCAGCA # Right flank : TCCCCCGTAAAAAAGCTTTAGTGGCAGCGTTTCCGAAAAAAAGCAACAAAGAAAAACACTATGTATCCCAAAACTATGTAACATAATTATCCTTGATACTATAGGCCATGGTAGCAAAATCGGCTGTCGTCGATCTCCCGGTATTTTTGCGCTATTAGGGGTCGACGACAAGTTCATAGACGAACTCCCTCACCCTTGTTTACCTAAAATTCCCATACCATCCACATTACCTTTTTCACCACGTGCAACCATTTTGCAACCGCTTTCTTATATAATCTGATTGGTGCCGCCATGCGGCGCTTCTTACAACAAAGCGGCTGTACGCCAACCATAATATGTGGACAGCCGCCAATCAAAGGAGGATGTCAATGCATACACGATGTTTGCCTGCCATTGCAGCCGCTGTGCTGCTCCTCTGCGCGCTGCTTGCACCGCTCTCTTCAGTACAGGGAAGCGGGACGAAGCTCGTGCTGGAGCAGACGTATGCGAACGTCAGCAAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATTCAATTCCTCATAGGTACGTTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 27066-25904 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALKF01000146.1 Paenibacillus sp. OSY-SE Contig146, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 27065 30 100.0 36 .............................. TCGGGATGAGCGTTAAGGACTGCCGATATCACTGCG 26999 30 100.0 38 .............................. TTGCTTGGATTCGTTAACCATCCGCGTTCGTTACGCGC 26931 30 100.0 36 .............................. AACCACAACAACACCCGACTGTACTTCTGGGCCATA 26865 30 100.0 37 .............................. TACTGTGGTTGAAGGGGTGGGCCATAGTGTTCGTGGA 26798 30 100.0 38 .............................. CCTTCAGGTTGACTCGTTGGAAGGTTATACAATTCATG 26730 30 100.0 37 .............................. GCTTTATAACGCCTCTAACCTCCGCACAAGCGTCACA 26663 30 100.0 35 .............................. CGGTGTCCCCTCAGGCCAATATAGCGCATTACCAT 26598 30 100.0 38 .............................. CGGAGTCGCTTCCGGCTCCCCTTCCGCGAACATTTGGA 26530 30 100.0 37 .............................. GCCATCATGTGCCATTTCAGCCTCGGCGTTTATTTTG 26463 30 100.0 37 .............................. AAGTTATTCCCATGTGTTTCTGACGAAAACCAAACGT 26396 30 100.0 36 .............................. TTCCACAGTCTGTTCCGCTTCCTGCTGCGCACCGTC 26330 30 100.0 37 .............................. ATGATAAGCCCAGCAGAGTGCTATCGCATCTGAAGGG 26263 30 100.0 37 .............................. ATGAGACACCCCGTACTGTTTGGCTACCACTGACTGC 26196 30 100.0 37 .............................. TTGAATCTTGGCTTTTTGTTAAGCTTCCATTGAGTCG 26129 30 100.0 36 .............................. GCCGTCTTGTTAACGAACTCAATAGGACGGAATATA 26063 30 100.0 36 .............................. TAGAATGCTTTAGCCTTCTTGTTGCGTTTGTATTTG 25997 30 100.0 35 .............................. TTCGCTTTTCAATGCCGGGGCGAGCTGCCCAGGTG 25932 29 93.3 0 ....................A...-..... | ========== ====== ====== ====== ============================== ====================================== ================== 18 30 99.6 37 GTTTTGAACGTACCTATGAGGATTTGAAAC # Left flank : CAAAAGTATATCCCTTATCATTCATTGTGGTAGGTGAGCATATGTTTGTGATCTTAGTCTATGACTTTAATGAAAAGCGAGTGGGAAAGGCAGTTAAAATCGTAAGGAAGTACCTTCATTGGGTTCAAAATTCGGTATTTGAAGGGGAGTTATCTGGAGCCAATTACGTGAAGCTTAAAATGGAATTGGAAAACCTAATGGACCCAACTGAGGACTCTGTCATTTTTTATACTTTTCGAACGCAAAAATATTCTAAACGGGAAGAAATGGGTTTAAAGAAGGGAGGGGACGAGTTTTTTATTTAGCCAGAATTGTCGTCGATCCCCTATAGCGCAAAAAAACCGGGGGATCGACGACAAAATGAAAAAATGAGGAATAGAGAGAAAAATGAAGTAAAATGAGGGGGATTACTATTGTTTTTGATGTTGTAGGAATTGATAATCTTGGCTTGTGAAAGTAATGGCTGTTTGATAGAATCAGCGTGAGCCAGCACTTTTTGG # Right flank : TGGGGCTGGTGTAACTCGAACAAGTGGTGTTTGCGTATTTTACATGTTATTTCCATAACGTCGGCAGATTCCATAATGGTAGAAAGTACAGGCAAGCTCACCGGCCTCCATGTAGTACTATACGTGAGAATCTTCTCCGGGAGACGAAAGGCAATAGCAAGAAATGAATAAGTTTTACACGGCGAGCGCTTCTCTCAATGGGAGGCGCTCGTTTTTTAGATCTGTGTTACTCTTCATCGTTAAATCTGTTCAGTTTATCGAAATAAATCCCCTCCGTATATGCACGCATCGCCTATTCCCAGCGGCTCACCCATGGTACATATTCAGTCGAGAAGAGCGTCACGTGACAGAGAAACGGTGCGTGATTTGGAACAAGGAATCTCTTGAATATTTTGGAAAACTAATCTATAGTGATTATAACGTCAACATACTATCCGGTCAGTATGTTGAGCGAAGGGAGGAAATTCGTATGAATTTTGATTACTCCAAGAAGGTGCAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAACGTACCTATGAGGATTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 69641-70008 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALKF01000174.1 Paenibacillus sp. OSY-SE Contig174, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 69641 30 100.0 37 .............................. AAGCGTTTTTGTACGCGGGGAGGAACACGCCGAACAA 69708 30 100.0 38 .............................. CCGGGCTACAAAATGAATGAGCAACCGATGGAACCGGA 69776 30 100.0 39 .............................. TAAGGCCGGATAACTCGGTACGCTCTAAAGGAGTTCCGT 69845 30 100.0 37 .............................. ACTGCAAAGGAAACGTACTCTTGCCCGGTGTGCTGGA 69912 30 100.0 37 .............................. TTCTCAGCATCTCCATTGCTTCATCGTCGAAATAGTT 69979 30 96.7 0 ........C..................... | ========== ====== ====== ====== ============================== ======================================= ================== 6 30 99.5 38 GTTTTGAATGTACCTATGAGGAATTGAAAC # Left flank : GGCCTATTGGATGCTGCCGTTGCTTCCCGTGCTGCTGCTGACGGGCTACTTGAGCTTCCGCGACGAAGGGGTGGGACTGCAGGACCGGCAGCTTATCGTGCGGAACCGGATTATCGCCCGGAAGACCTGCTATGTGCTGCGTCCGCAGATCGTCGCGCTGAAGCTGGGCCATACGTATTTTCAGGAAAGGAAACAGTTGCTGTCCCTGACGGCCCATCTGCTGAACGGCGATTCTTATTCACTCACCTCTCTCGAAGAGCGGGATTTGCAAGAGGTATGGCATTGGTACCGCAAAAAGAAAAGGTAGAGTGTAACGTGTCGTCGATCTCCAATCGCGTAAAAAGTGCGGGGATCGACGACACTTTATTTTTCAGAGAGAAAAGGAGCTTGGTCGAGCTGGGAGTAGATTTGCCAACGAATTCAGATTTTTCATTTTCGTCTAAATGTGGGGAGGAGAGCAATGGTGATGTGGCGAATGCTTTAAGGACAAGGCTTTTTGG # Right flank : CATGGAGAATTGAACAATTAATAAAATAATGAGCTTTAAGAAACGAGCTTGTAATTTTATTACAGTGTTATATTGTGTACGTTGCAAGGATAAAATATAAAATAATTCTTAACCAAGACTTTTCCTATTAAGTTGCAAAGAAAAAGATCTTTTGTGGATCAGCGTCCTCTATAATGTCGTCGACCTCCAATAGCGTATAAAGTACGGGAGATCGACGACATTTTGTTTTTCTAAGGAAAATGGAGCGTTTTCGAGCTAGGATGTCATTTTGTAGTTTAAATGAGATGTTCCCTTTTTGATGAACATTGGAAGGAGAATAAGGGATACTTGTCGAAATGCCTTTAAGAGCAAGGTTTTTTGGGGTTTGTATCGTACCTATAAGGAATTGAAACGCGTTTCCCATTGGGAATCCACCTGTTTGGCAATGTCTTGTTTGTATCGTACCTATAAGGAATTGAAACCGTCTGGAGACATCGACACGATGTACTCCTTTAGGTCGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAATGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 2 70370-71270 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALKF01000174.1 Paenibacillus sp. OSY-SE Contig174, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 70370 30 100.0 39 .............................. GCGTTTCCCATTGGGAATCCACCTGTTTGGCAATGTCTT 70439 30 100.0 37 .............................. CGTCTGGAGACATCGACACGATGTACTCCTTTAGGTC 70506 30 100.0 35 .............................. AGGGTAGAACCCCATAAATGATGTTGTGCTTCCCA 70571 30 100.0 36 .............................. GCGTCCGTGATATCTCGGAAACTTCCTGCTGCCTGT 70637 30 100.0 38 .............................. CTTTTTACGGCCTTGCTTCAAAAGAAGCGCTGCTGTGA 70705 30 100.0 37 .............................. CGAGATATCCGGGTTGTCTATGGAACGGCAGCAGGAA 70772 30 100.0 36 .............................. GCTCGTCGCCCGCTTCAAAACCGTGGATTCGCACAA 70838 30 100.0 37 .............................. CAATGAATACCGTATGCCCCTTCAGGCGAAGAAAAGC 70905 30 100.0 37 .............................. ATACTAGAATCGAAAGCGTTAGCTAAAGGTGGCCACC 70972 30 96.7 36 ....T......................... CTCATTCCCCTGTACCTCCTGACTCCGACCACTTTG 71038 30 96.7 39 .............................T GTGTCCAATAACGAATAATATAACCATTGACTTCTTTTA 71107 30 100.0 37 .............................. CTCGCTAAGTACAACGAATTGAACGCAGTTCAGAAGC 71174 30 100.0 37 .............................. TTTAAAGAGGTTGAGTAACAAATCGCATCCAGAATCA 71241 30 93.3 0 .G..........T................. | ========== ====== ====== ====== ============================== ======================================= ================== 14 30 99.0 37 GTTTGTATCGTACCTATAAGGAATTGAAAC # Left flank : GAAACACTGCAAAGGAAACGTACTCTTGCCCGGTGTGCTGGAGTTTTGAATGTACCTATGAGGAATTGAAACTTCTCAGCATCTCCATTGCTTCATCGTCGAAATAGTTGTTTTGAACGTACCTATGAGGAATTGAAACATGGAGAATTGAACAATTAATAAAATAATGAGCTTTAAGAAACGAGCTTGTAATTTTATTACAGTGTTATATTGTGTACGTTGCAAGGATAAAATATAAAATAATTCTTAACCAAGACTTTTCCTATTAAGTTGCAAAGAAAAAGATCTTTTGTGGATCAGCGTCCTCTATAATGTCGTCGACCTCCAATAGCGTATAAAGTACGGGAGATCGACGACATTTTGTTTTTCTAAGGAAAATGGAGCGTTTTCGAGCTAGGATGTCATTTTGTAGTTTAAATGAGATGTTCCCTTTTTGATGAACATTGGAAGGAGAATAAGGGATACTTGTCGAAATGCCTTTAAGAGCAAGGTTTTTTGGG # Right flank : CTCTGACCCAATGCCGCAGTGGGCCCACACGCTCGTCCGGTTTCTATCGTGCCTAAATTCAAAAGGAATGCAGGTACAATGAACAGGCTGAATAATAGAACTAAGAAGCTAACGCTTGCTAGAGACAGACGTTAGCTTACTGTTTATTACGATTTAACCTAACTTATCCACTTTACGCCTTAACTTCGAGGACAATATCATCAATCAGGACAGGAGTTACCTGCTTCAGATATCGCGTTTAGTAAGATTTATTAAACGATTTATAGCAATTTCCCCATTTGTGCAAATCATAAAGGTTCACTCCTGCTTTCATTCTACGAATCTAGCAATCAATGCATTGTGTTCAGAGAATCCCGCAAATATGTTTTATGGCAGTTCCAACCGTTACGCTTGAATTCAGGTTTCCTCATATCGTTCCCCTAAAGCAAGAACTGTTTATTATCTCTTCGCTCATCTTCACATCCTTTTACCATTCTGAGCTCCCTCTTCATTTAGGCATT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 74705-75664 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALKF01000174.1 Paenibacillus sp. OSY-SE Contig174, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 74705 30 100.0 36 .............................. TTTGCATCCCATCGGAGCGATACAGTTTTATTCCCG 74771 30 100.0 38 .............................. GATCAAACACGTTTATCCCTCCTGACGATGACCTTATG 74839 30 100.0 36 .............................. TCCTTAAACATGCCGAGGTGACGCGCCACGTTCTCG 74905 30 100.0 35 .............................. GCTTCTACGTTCCACCACTTATCATCCATAGATTG 74970 30 100.0 37 .............................. CCATTTGCATGTAGCGATCATCCTCGTCATATCGTTG 75037 30 100.0 36 .............................. TGCAATCGGAATCTTTCGGGCATGCACCGTCTTCTC 75103 30 100.0 37 .............................. ACGTCGTACATCAGCTACCACCCAACTTCCTAATTTC 75170 30 100.0 37 .............................. TATCGTCAATGAGCAGGAGAGTCACCTAATTCGGGTT 75237 30 100.0 36 .............................. GTATCAATCAAAGGTAGATATGTTGGTAGTGATATA 75303 30 100.0 36 .............................. TGAAGTTGTTCCCTATTGCCCAAGACCGCGAGGTTG 75369 30 100.0 37 .............................. CCTAACATCCAACACGAGTAACCACTCATCATCCCAT 75436 30 100.0 36 .............................. AGGTATACGAAGAAGCATAAAAAGAAGCCGTGGGGG 75502 30 96.7 36 .G............................ TCCGGCGCGCGATTGCGGAAGGATGGACGCCGGAAA 75568 30 100.0 37 .............................. ATCCGAGAAAAGCAACGCGAGGGCGTCCGGTGGCGCG 75635 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.8 36 GTTTGTAACGTACCTATGAGGAATTGAAAC # Left flank : TGTGCAGGCATGAGTGGAATATTCGCATCGGGCCGCATTAATGGATATTTTAATAACGAGGTGCCCGATTTATTCTTTAGATTAATGTCTTTATATATTGCAAGCAACCAACTTTCAACAGTTCACTGGGCGATTCCATTTGGACAAGAAGAAGTTGATATTATGCTGGAAAGAGCCGGAGATGTTTTGGATTGGTATGATGAATTTCAAACATACGTGCCGAACTGGTATTTGCCAAACTACACTGAATGAGCATATACCCTTTGAGTACCTCGAGTATATATCAGGTAATTAGGATAGAGATTATGTCTGGGTGCAAAAATATGACTGTTTTTGTCGTCGACCCCCAATAGCGCCAAAATCCCGGGATATCGACGACAGTCCGTTTTTACTCTAAAGCCTGTAATACCAAGGGTAAATATGTTAAAGTGGTTTTTGAACATCCTTGACTTTCCCATTGTTTCTTTTTCTAAAACGCTGCTATCATAGCTTTTTTTCGG # Right flank : CACATCACATGGGTCTTTACGTCCTTCCGGATCTTTGTTTGTATGAGGAATTGAAACTTGGCAGCTTGCGCCAGGTTTTCTAACAAAATTTCGACAATAATAAGAGAATATTGGAAATGTATGTAGAGAAGTAGTATGATCGAACTAGTTCAGTCAGGAGGTATTAGTCTTTGAGAATCAAGATTACATTGACCTTTGATGGGAAGCTTATCGTTCCGATCAATCATCAGGAATGGCTTCACGGACTCATATATCACAGTATCCGAGACGACGGATACCGGGATTTTCTCCACAATACGGGCTACCAGCAGGGGAAACGCCAATTTCGAATGTTTACCTTTTCCAAGCTTAATGGTTCACATAGACTAGATAGAAACTCTCACACTTTAGAATTTTCACCGCCTCATGTATCATTCATCTTTTCAGCGTATGACAAGAAATTAGTTCAGGAACTAGTATCATCATTATTGATAAGGGATGATCTCCGCTTGGGGAGCCAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAACGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 120387-119889 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALKF01000190.1 Paenibacillus sp. OSY-SE Contig190, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 120386 32 100.0 35 ................................ CAGGAATACATGGGGGAGTGGGAAACACTCCTGAA 120319 32 100.0 36 ................................ TTTATTCGCGTCATCGAGGCCTTGATACCGAGAACA 120251 32 100.0 34 ................................ AAAAAGTCGGCACAAAGGCCGGAGGAAGTCAGGG 120185 32 100.0 33 ................................ CCATCAGTAATGCACAATGAGAAAGTAAATGAT 120120 32 100.0 35 ................................ GGAATAGATACGGGCAGGAAGTCGCGAGTGTCGGT 120053 32 100.0 34 ................................ ACATGTGCCGCGAGTCGCGCATGCCAGCCGTGCT 119987 32 100.0 35 ................................ TTATTTGCGTGATGCGGAATAATCGCGAACGAGAA 119920 32 93.8 0 ............A..................C | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 99.2 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TGTAAAAATCTTCTCATGGGCGGAGAAATCTTAAGAAAAAGTTTCGTTTCTATTCTCAACTGAGGGGTGCTTTTATGATAATTCAACTTGTAAAATCCAAAGAATTACTTTTAACGACCCATGCTGGACTTAGCCGGAGAACAGGAATATGTTCCTCTGGACATCGATCTCTCACCATTTTACAACTCAGGTACGAAAAAAGAAGGCGTGTCCGCACGTATAAAGGGTACTATTATGAACCTATAAAATGTGGTAACTTGTAATTTGTAGATAGTAGGATGTAAAAATAGATGATATAGATGCAGTATTGGTTCATTCTCTAGTGCGAATGTATAGTGCACATGAATTTACGGGGGGATTCGCACCGTCATTTTTCCAAAATATAGGTGTTTCTTCTTGCTGTATTTGTAATTAATTTTAGATTTGATTTTTTCAATCGTTTAATTGATTATTTTGCTCGATTATATAGCGTAAATTGAGAGTTACTATCAAATTTCGCT # Right flank : AAGCATGGAGCATTACGATTCCGCCATGACATGAATGTATTAGAGACTCAACCGCAGTCACTTCTGAGCGGTGCGTAAACAGCAAGCTGATGTCCCGAGAGACAAGAGCTTGCTGTTCTTTGCTTTCAATGATGTTATTGAATACATACCTTTATAATCTGATATTATCCCCATACATGAGATATCTTTCAGACTCTGGCTGCAAACATCTTCAGATTGAAAAATACTTTTCAATATTAGTTTAAAGAGACTGTATCGCTTCCATTAAAGTGCTTTCTATCGTAATCTGTGGTGTTCTTTGAATGAGATTTACTCCAACCAAGATAAGGTGTTTTCTAAAGATCCCAATGAACCTCAGCTTCCTCAATCGTGCCCTGTTCGACTGCAGTCTCAGCATATCCGCTATAAGAAAGTTGGAGTTTGCCCAAGGCTTGTATACTTCCTTGAGTGAAATTTTTGTTAACAGTAAAATTACCAGAGTATGGAGCGAGGTATCCTGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //