Array 1 2316999-2317386 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALF01000001.1 Pseudomonas aeruginosa SG17M Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2316999 28 100.0 32 ............................ AGGTCGAGGTGGGCTCGGCGGCGATGATCGAT 2317059 28 100.0 32 ............................ GGTACGTGGTTTCGACCAACAGCACTGCCCAA 2317119 28 100.0 32 ............................ TAAAGGAGATTGCCATGCTGATCAAACTTCCC 2317179 28 100.0 32 ............................ GTCAGGGTCGTGCATGACTCCGATGTGGTGGC 2317239 28 100.0 32 ............................ CGTCCAGAACGTCACACGCTCGCCGTCGATGT 2317299 28 100.0 32 ............................ AACCGGAGCCTTCGGGCCGCGTTGGGATCCAC 2317359 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TACAGCCAGGGCAGGCAAACGCTGTTCGCCAACCTCTACGCCGAAAACGGCGCGCGCAACCGCAGCGAAGGCAACCAACTGACCCTGCGCTACCTGCTGGCGTTCTGAATCGGCGGATAACGCCCTGGAAACGCCGACACCTCCCCGGGTCCGTAGGGCGAATAACCGCTCGCGGTTATCCGCCGCTTATCCGGGGTGTCGGCGGATACCGCCTGTGGCGGTATTCGCCCTACAGGCCCTGGAAACGCCGGACAGCTCCCCCGGACATTTCCGCAGGCTCTCTCAGAAGCCCGGGAATTGGATAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ATTGACTGCTGGGGCCCGCTCCACTGTATCAATCTGCGGACTTCCGCAGAAGTCCAAGAGAGTCTGCAAGTCGTTGCCGCACAAAGACTTTTCCTCTCTTTGATGTTCTGCCGTAGTCCACTGCGATCCGCCTACAGCCGGGACTTTTAAGTCCACAAACAAGTCCATTTTTGCGGGCGCGGCTGATTCCGGATTGTTGATGGAGGGGCGAGGTCGACGTGACCAGCATCTGGTTCCTGACTCATGTTCAGGAGCAAGAGCATGGCACTCTCAGACCTGGCCGTTCGACAGGCCAAGGCAACAGGCAAGGCATACACCCTCCCTGACTTGGATGGCCTCTCCCTGGCCGTCACCGCTGCAGGGGGCAGGACTTGGCACTTCCGCTACTACTGGGCGGGCAAGCAGAAGCGGATGTCGCTCGGCACCTACCCGGAGGTGACGCTTCGCGAGGCCCGCAGCCTACGCGACGAAGCGCGCGCCCTGCTGGCCAAAGGCACCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [56.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2403519-2403666 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALF01000001.1 Pseudomonas aeruginosa SG17M Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2403519 28 100.0 32 ............................ GCGACCCTGGCCAGGGCGGCGTCGCGCTCTGC 2403579 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 2403639 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CACCACCAGATCCAGGCGGTGCTTCAAGGTGCGTCCAAGCCGCTCAAGCTGGTAGATCAGGTGACGAGCCTAGGCGTGATGCTGACTCTGGTCGGTGCCGGTTATGGCCTAGGTTTCGCCATTGCCTCGCAGGTGCAGACCCTGAACCGCCCCGACATAACCGTTCGCCCCTTGGCCGGCACGCCGCCCATGCTGTCCACCTACCTGCTGCGCCGCAGCGCCGAACCCTCTGAGCCCATGAAGCGGTTTCTGCAGCGCGCCCGCGAGGAGTTCCTGCCAAAGGGAGATGAACCGGCCTCGTGACGTTGAGCGCTCGGGTACATTGGCTACTGCTGGCTGTCCATGGCTCGCACTGGACTTGCTCGGAGCGCGCGTTGACCAAGCGTGGTTTTTCAGTCCATAATTATGTCCATCTCGGTTCGCCGAGTGCGGAAAACTCGTTATCAATCAACGAGTTGGGAACACGATGATGTTCCCGTTTCCTGACGCTCATCGCGCGG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTGGTAGGCTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2413675-2412508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALF01000001.1 Pseudomonas aeruginosa SG17M Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2413674 28 100.0 32 ............................ GACAAGAAACTGTTGGCCGAGCATCGGCACCG 2413614 28 100.0 32 ............................ TGCAGCGCCGCGAACGGCAACGGCGGCGACGG 2413554 28 100.0 32 ............................ TGGAACGCATTGCCTGCCTGCGTAAAGAACTC 2413494 28 100.0 33 ............................ TGTGCCGTCCGCGATCTGGCGGATTGCCGGCTA 2413433 28 100.0 32 ............................ AATCTGAAACGCATTGGCGAAATACACCACCG 2413373 28 100.0 32 ............................ ACTGTTCGAGTCGCGAATGACTCGGTGAACTA 2413313 28 100.0 32 ............................ AGAACGAAAACTGCTAGCGGCGACGATACCCG 2413253 28 100.0 32 ............................ GCCCACCAGCTCAGTCCAGGCGCTGCCGGAAT 2413193 28 100.0 32 ............................ ATGCGGATAAGGCCCGCAGGCGCCGAATTGGC 2413133 28 100.0 32 ............................ CAGCAGCGGCTCCAGGAAGAGGGGCGCTGCCT 2413073 28 100.0 32 ............................ AAGAGTCGCGGCGACAACTACCAGACGTCCGC 2413013 28 100.0 32 ............................ GTATGGCTCTCTCCATTGGGGTGGCGATACTC 2412953 28 96.4 32 .......A.................... GATCTGGGGCGGCATCATCACAGCAGAATCTA 2412893 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 2412833 28 100.0 32 ............................ AGCTTCGGCACCCTGATGCGCGCCGTCGAGGG 2412773 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 2412713 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 2412653 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 2412594 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 2412535 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3978217-3977468 **** Predicted by CRISPRDetect 2.4 *** >NZ_JALF01000001.1 Pseudomonas aeruginosa SG17M Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3978216 28 96.4 32 ..C......................... TAGCTGATCAGCAGGCCGACAGTCAGGCCTGC 3978156 28 100.0 32 ............................ TACCCGAATACGACTTGCGCGAGGAAGACGGT 3978096 28 100.0 32 ............................ AGCATCGCATCAAATCGTGCAGAACACGATAA 3978036 28 100.0 32 ............................ TGGTCGAGCAGTTCGGCAAAGGGGCCGTGGTT 3977976 28 100.0 32 ............................ TTCACCTGGTCGCCGGCCAGGCTGATCACTGC 3977916 28 100.0 33 ............................ TACAAGGTCATGGCGCTCGGCAACGTGGTGGAA 3977855 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 3977795 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 3977735 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 3977675 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 3977615 28 100.0 32 ............................ AGACAATCCGGACCTGCCGCCCAGGACGATCT 3977555 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 3977495 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 13 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GTGAGTATCGCCGGGCATGCGGTGCTGGTGGCGAGCGGAAGGATTCGATTGAGCTGAGGGGCGCTTCAGGAGGGGGATGACCTCGTGCATGCCAGACCTCCACATACTGAAGCCCTGATCCGTAGGGTGAATAACCGCTCGCGGTTATCCGCCGCTTATCCGGGGTATCGGCGGATACCGCCTGTGGCGGTATTCGCCCTACAGGCCCTGGAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGTCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATANNNNNNNNNNNNNN # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //