Array 1 94579-97715 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALMP01000046.1 Streptococcus suis YS3 Contig00047, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 94579 36 100.0 30 .................................... AATAGGGCTAAATTTTTGGGCTTCAGTTAC 94645 36 100.0 30 .................................... AACTATCTCGTGGGGTTGAGCAGCGGCAGA 94711 36 100.0 30 .................................... GACGATATAGCCAATCACCTAGAGCGCTCT 94777 36 100.0 30 .................................... AGTTTCAGACATTGGAAGATGTGGCGAATG 94843 36 100.0 30 .................................... CGTGATTTGTTGTCTGAAAAAATTGAAGCT 94909 36 100.0 30 .................................... AAAGCCCTAAAGGGTCATCACACAGACACA 94975 36 100.0 30 .................................... TTTAGAGCCGTTGGAGAGGTGACGAGACAA 95041 36 100.0 30 .................................... CGAACACTCGGCGTAAAAACAGAGAAAACA 95107 36 100.0 30 .................................... TTAATATAACTTCGCCAACCTCATTAACAT 95173 36 100.0 30 .................................... AAAAAGGTGTTTGGGAAAACAAGATAGTGG 95239 36 100.0 30 .................................... TCTTAGCTATCATGATACCGCCGACCGTGG 95305 36 100.0 30 .................................... CAGTGTCTGTTCAACTTAATATGTGTTACT 95371 36 100.0 30 .................................... ACTCGATTGGGCTGTCCGCAACTCCAATCA 95437 36 100.0 29 .................................... TTACAACAACAGGAAGCGAGGAAGTCCAT 95502 36 100.0 30 .................................... AATAGGGCTAAATTTTTGGGCTTCAGTTAC 95568 36 100.0 29 .................................... TTAACAGAATCCTCAACCTCATCTAAACT 95633 36 100.0 30 .................................... CGTTTGATAAAGATTTCAAAATCAATAAAG 95699 36 100.0 30 .................................... AAACGTTTTAGGATTGCAATTACTTTCCCC 95765 36 100.0 30 .................................... CTGATAACGTGTCTTATGTAGTCCAGGATG 95831 36 100.0 30 .................................... CGTAAGCTAAAGAGTTAGCGAACAAGACGA 95897 36 100.0 29 .................................... ACGTTGTCGAATGAGCGACCCCATCAGGA 95962 36 100.0 30 .................................... ACTTATCCAACATACTACACAAGGCAAAAT 96028 36 100.0 30 .................................... CTTGTTTTTTTACAGTCTAAAAAACTGTTA 96094 36 100.0 30 .................................... GTTTCTCAAACAGAGTTCAATACTGAGAAG 96160 36 100.0 30 .................................... ATCTATGATTCGATTTATGCATATTAAACT 96226 36 100.0 30 .................................... CTTGCTTCGCTTGTCCATTTTAGTAACCAT 96292 36 100.0 30 .................................... ATGATGAAGTATTGATTGACCCTACCAGCA 96358 36 97.2 30 ........G........................... CTCTTGATGAGCCTTTTCCAAGAGTTTGAC 96424 36 100.0 30 .................................... GCGATTGGGCAGAAGAAGCATGGCGAGCCA 96490 36 100.0 30 .................................... CAGCCAACCCTCAAGCAACTGTAGACAATG 96556 36 100.0 30 .................................... CTGGTGATGGAAGAAGACAAAATAGCTGAA 96622 36 100.0 30 .................................... TTGCGTTCATTGAACCTTGAGCGATTGTTG 96688 36 100.0 30 .................................... CGATATGTTGAGAAAAGAATTTGACGAATG 96754 36 100.0 30 .................................... TCCATGGGCTACCATCTCAACGAACGGAAG 96820 36 100.0 30 .................................... AACAGGCAGGTAGACCTTGTTGCTGGCAAG 96886 36 100.0 30 .................................... ATTTAAACGAATAGTCAATAAAGAAGTTAT 96952 36 100.0 32 .................................... TTTCGATTTTTCCAAACAAACTATCTTTAGAT 97020 36 100.0 30 .................................... TATAGTCTTAAAAAAGCCTCAGATGTATTG 97086 36 100.0 30 .................................... GAAAATCAGGTGCGTTAAGAATGTCGTACT 97152 36 100.0 30 .................................... TAAAAAAGCCGCCGAACAATATTCCGAAGT 97218 36 100.0 30 .................................... TCTTTCGCCTGCTAGCCTTCACTGGAATGC 97284 36 100.0 30 .................................... AGTATCTGATAAAGCAGAGCAATGGCAGCA 97350 36 100.0 30 .................................... ACACGATATCCGTAGCCGAGTCCATGTGTA 97416 36 100.0 30 .................................... TTGCGACTTATGAGGGTGTCTATTCAGCTG 97482 36 100.0 30 .................................... AACAAGTTTACTGGAGATGTCTCTGGAATC 97548 36 100.0 30 .................................... TTTCTACAACATCACTGTCGAAAATGGTGT 97614 36 100.0 30 .................................... TGGCTTATGCAGAGTGTTTGGGCAAGGCTA 97680 35 83.3 0 .......................T..T.-....TCA | T [97702] ========== ====== ====== ====== ==================================== ================================ ================== 48 36 99.6 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAAATTTAGATGATTACCTAACTTACGATTCTTTTGTGAGAATAGCACAGTATTTAGAGGAACTTAGTAATAAGTATCCCTATTTCAACACAATCTTGTTTCCTTCTCAAGAGGGCTATTTGTACTTGACCGAGGCAACGCTTGAGACTGTTAATATTGTGTCTGATAGAATTGAACACTACCCTGCTTTCACGTTTCTCTATACTCGTTATCAGCAGTCATATCCCTCAACTAGCCCACTAGGTGAAAAAGAATTTTTAAACTCTTTGAGAAAAATCAGTTCCTATTTATTCTCTTCAGACATTAATAGAGTCGTGAGCTTAGCAGACATAGACCTAGTAACTCTAAAGATAGTTAATTCACTTTATCAGTATGATATTAATATGGTATATATGTATAAAGGAATATCAAAATTAGAGGAAAATTACCTTTCTTCCTAAATTTGACAAGTTTTTCGATAAATATTATAATTACGGAAGAGAGTACAAAAACCATTTGAG # Right flank : ATAAGCGATAGTACATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGATAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCCACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTAGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGGGACTTCAATGGGATTAAAGGCGGTGGTGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGTAAGGACTGCATCTGGATTGTGGATGAGTCTAAGGTGGTTCAAACCCTAGGAGCCTTTAAGTTGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //