Array 1 10615-12722 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEKQ010000047.1 Pseudoalteromonas sp. JC3 _contig_10___JC3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10615 29 100.0 32 ............................. CCAGTGTGTCCCAGACGTTACCAATCGGCATG 10676 29 100.0 32 ............................. GTGGTCAATTTCAGCTTGTAATGAGGCTGTAT 10737 29 100.0 32 ............................. TCATCAAAGTAATACACCGCAACTTCTGCCTG 10798 29 100.0 32 ............................. TTTTTCAATTTTCTAAACTTTTTTATGTTCTC 10859 29 100.0 32 ............................. GCCCTGAGGTTAAAACTATTAACGAGTATCAA 10920 29 100.0 32 ............................. ACTGCTCTGTTATTGCCACGCCAGATGGGGCG 10981 29 100.0 32 ............................. CGGTTTAACCCTCTACGATAGCCAGAGGCATA 11042 29 100.0 32 ............................. GGTACAGTTGACGCGCTGTTTCGAGATGGCCA 11103 29 100.0 33 ............................. TGAGTATTGGACTCAGCGTTTTTTAATTTGGGC 11165 29 100.0 32 ............................. CGCGGGTATCCGCCGTGGGCGGCTCGATTTAT 11226 29 100.0 32 ............................. TGCAGCAAAAAATCGTAAAAATCGCTGGAAAA 11287 29 100.0 32 ............................. ACACCGCTTTTGACACGATTTCGCCCGTTGCA 11348 29 100.0 33 ............................. GCTGAGGTAATATGTGTTCGATTTCATAACACC 11410 29 96.6 32 ..C.......................... GATGTTACCTCAGTTGATGACAAATTTTTTTT 11471 29 100.0 33 ............................. CAACTAACTAACGACACACGCACACCAGACGAT 11533 29 100.0 32 ............................. TTCTAATTTACTCGTTTTCCAAGTTAAAAACA 11594 29 100.0 33 ............................. TTGAATGGCCAAACTATCCAACTGTGATCAAAC 11656 29 100.0 32 ............................. CGTGTTTGCTCTAGCTGTATTGCTGCAAGTCG 11717 29 100.0 32 ............................. CCCATTATCTCACTTATACCACTCACAAGATA 11778 29 100.0 32 ............................. ATATCAAAAACATTTATGTTCCCAATACTGAT 11839 29 100.0 32 ............................. GGCAGTATGCACCACTCACCATTTCGCCTAAC 11900 29 100.0 32 ............................. CATGGTAAACACGGCAATTCGGTTGGTTTTTA 11961 29 100.0 32 ............................. GGATTGTTTCCAGTTGAGAAAACCGGTAACGA 12022 29 100.0 32 ............................. AATATCACGCTATGTCACTGGTGACGGGGGAA 12083 29 100.0 32 ............................. GACTTCACGCTATCACGAAGCACAAACAGCAT 12144 29 100.0 33 ............................. CAGCGAGTCGTCGCGTAAATCTGGAGACTCAAC 12206 29 100.0 32 ............................. CCTCTATGAGAGTGGAGAGCGAGTCCCGCCAT 12267 29 100.0 32 ............................. TTAGCTGTTTTGAAGGATAAAGTTTATGCGAT 12328 29 100.0 32 ............................. GTGACAAAGCCAGCAAATAACGTAGCTGTTTA 12389 29 100.0 32 ............................. CAACCACCATATTTTCTACTTTCAGCTGGCGT 12450 29 100.0 32 ............................. AGTTAGATGTAGGTAAAAAATAGCTATACAAA 12511 29 100.0 32 ............................. GTTATCACACCCGCCTAGAAGCCGAAGAAGCC 12572 29 100.0 32 ............................. TCACAGTTTACGTGTAAATATTAGGTATAAAC 12633 29 100.0 32 ............................. GGTTGCCACCATCGAGGATTTCTACCAATCCC 12694 29 93.1 0 ..........................T.T | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.7 32 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : ATAGGCGACGAGGGCCATCGCAGCGGAGGGTCACTATGAGTATGTGCATGGTTGTTACTGAGGCGGTGCCACCGAGGTTAAGAGGTCGTCTGGCGGTGTGGCTGCTGGAGATCCGCGCCGGTGTGTATGTAGGTGATGTGAGCAAGCGCATTCGTGAAATGATCTGGTTTCAGGTCAGTGAGCTGGCGGAAGACGGCAATGCGGTTATGGCTTGGGCAACTAATACCGAGTCGGGTTTTGATTTTATCACTTACGGCGAAAACGCCAGAATGCCTGTCGATTTTCAGGGCCTGAGATTGGTGAAGTATACGCCCAGAGCAAATGATAATCCGGGAGCTGGTTAGCGAACTCCCCTCGTTTTTTTAATTCGATTTAATGCTCTTTAACAAGTTGGTGATTAAGATTTATACCTCATAGTGAGAGGTGCTTTTGTACCTAAAATTTTCGGTAACTTTTACTAGGTGATTTTTCTTTATTAAAAACAAGTATATAATTTTAGA # Right flank : TGAGCGACTCAGGTCTGGACCATGTGCTGGAATTCGTCCGTGAAGCAGCACCAGATGCTCACCTCATTGAGCGGTGAAACAGCGGCGATTCTAGGCCCGACTGTAATCCCGGGATTAAGTTATAGCCATCATTGTTAGCTAGTTATTTATCCACATGACCTAAATCACGCTCAGGATCTAACAAATCTCTCACCCTTCTTTTGAGCACTTTGGCTTCAGGAAAACCTTCATCCGCCTTTCGGCACCAAATTAGCGTATTGTTATAGTAAATTTTGAATATGCCTTTACTTGCTGGCACTAACGCGACTTGTTGTAAATCGTCAGAGAAAGTTGAAAGTAACTCTTGTGCAAGCCAAGTTGCTCGCAACATCCATTGGCAAAGTACGCAGTAATGGATAGTGATGGTCGGTTTTTGCATGAATTTACGTTTTTTTGAAGGCTGTGATGGGATTCTAGCACTGTGATTTATCATATGGCTAGCTTGAAAAAAACGGGGGTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 201646-201341 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEKQ010000034.1 Pseudoalteromonas sp. JC3 _contig_17___JC3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 201645 36 97.2 31 ...................................A AGATGAATTTAAGTTTTTCATTTGATTTTCC 201578 36 100.0 31 .................................... TGTGCGTTTTGAAAATTTCATAGATATGCCT 201511 36 100.0 32 .................................... TTGAATAAACTGCTCTAATTGTAATTCCATGA 201443 36 100.0 31 .................................... AAGGTTTTGAATTTCATTTGAATTTTCCATA 201376 35 86.1 0 .........................T.-....TC.T | C [201349] ========== ====== ====== ====== ==================================== ================================ ================== 5 36 96.7 32 GTCTGAGTTGCCTCGACTTTGAAGAGGATTAAGACC # Left flank : ATAGCCAAAACACACTGTACGTTATAGTTTAAATTACCGCCTCTGATGACAGTCTCGGATTATTCCCTCCGCGTATTACGTACATTTCGCAAACTTTTTAGAGGAATATTAGCTGAATGCTCTACAATATCAGCAGCCGAGAGTACAAAGCTTTGAATCTACTAGCCTTTTTATATTTTTATATCGTAAAACATCAACACTCGGTAATTTTGGAGCAAACTGCAAAAATCGACACTCCATGCTATTTATCCTGCATATCCCCTTTAGCACATACTTATCTTAAGCTGCGTATCTGTACCTTTAATCGTATTTTTAACTGAATTTAAGCTGAATATTTTAAAGTGTCAGCAGCTGAGACCGCAGGGTGATGAATTAATTATGATTTTGAATGAATTTGACATTAAAAATGTCAGTAAGTCAGTGGTTTTGGGAACAGGTTAAAGGAGACCGACATTTTTACCCCCTTTAGCCCTTGCGTGACGCGGCCTCGATCGGCTATA # Right flank : GAGCTGTAATACATCCCTATAGCTGGGTTCTATCAGGCATCAATGCCTTCCCCACCTCAAGCTGCGAAACTGCGTTTCGGTCTTTCGTCGTCCATCTCGAGACAAGCGATTTAAGAGAGTCGCGACATAAAGTCATAACTACGCCAGCCCCGTAGCAGCGGGTTTATCCCGCGATAGGAGCATCATCAGCAACATTGTGGCATAAAATTATAAAATAAATCGCGACGTAAAGTCGCTGCTACGAGCTATGTGCCCATATCACCAACTGCTCCCTCTACGTACATAGATTTAAACCCATAATATTAAACCAAACCAATATCCTAGGTTTGTTGAGCCACTTTTGGGCATAAACCTTGCTGAAGTTGTTATACATATTTCAGAAGGATTTGCTAAATGAAAGTTCAACACCAAGCAATGCTATATAATCAGGCTCAGGCTCAGGTGCGACGCGCGCAATCAATCGAAAATGAAGCGAAGGGAAGCGTTTTGCCAGCGTCAGA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAGTTGCCTCGACTTTGAAGAGGATTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.30,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 213598-214445 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEKQ010000034.1 Pseudoalteromonas sp. JC3 _contig_17___JC3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =================================== ================== 213598 35 100.0 33 ................................... TCCTCTACAGGATACTGTGGAAAATTATATTCT 213666 35 100.0 33 ................................... TAAAACCACGCACCATTATTTTGATTAGCCATG 213734 35 100.0 33 ................................... AAAGCTACTCTGTAGTTTTGCTCTGATTTATAA 213802 35 100.0 31 ................................... CATTGCTACGCCTGAAAAAGCTTCTTCAGAC 213868 35 100.0 34 ................................... AGGGTCCTTGTTGTGGTTTCGGTTAGGCGCTACT 213937 35 100.0 31 ................................... AAGTTGCCAAAGCTTGGACTTTGCTGGCCAT 214003 35 100.0 35 ................................... AACTTCTTGTTCCAGAAAGTTTAAACCGCTTTCTT 214073 35 100.0 35 ................................... ACTTTACTGATAGTCCAGCCACCACGCTCTAAGAT 214143 35 94.3 33 ........T...T...................... CTAAAAGATATTAGATGTGCCGTTGTTATATAT 214211 35 88.6 33 .......A....T...........AA......... AGAAGATTGTCATTTACGTACTGTTGAGCTTGA 214279 35 91.4 32 ........T...T...........A.......... GCTGAAGCTATAGGAAGGATTGCTTGGTACAA 214346 35 94.3 33 ........T...T...................... GCTATGCCATTTTCATTACATACTAATAACAGT 214414 32 85.7 0 .........................---..G.A.. | ========== ====== ====== ====== =================================== =================================== ================== 13 35 96.5 33 GTCTGAGTAGCCCCGACTTTGAAGGGGATTAAGAC # Left flank : AAGAGGAGAAACTGCTGTATTTAACTGGTTTACTAATAACGACCATAACAAGCAGGAAAATAAACAAACGCTCAAATGTTTAGGAGCAGATGGCGCGGGCTTATTATTGGAAAATCAAAAACCTAAACCTAAACCTAAGCCTAAGCCTAAAAATAACCGTAACGCGAGGTAGCTTTAGGTTAAGGGAAAGCACGATAATTATTTGTTATTAAGAGCCCATTAACGGCAGCGTTAGTGGGCTTTTTTATTGCCAGTGAATGACGCTTTTAACCTCGCTTTGAGCCGCATTGCTACGTTCCCAACCGGGTGTTTTTAACTGAACTTGAGCTGAATATTTTAAAGTGTCAGTAGCGTAGACCGCAGGGTGGTGAATTTATTATGATTTTGGGTTAATTTGACATCAAAAATGTCAGTAAGTCAGTGGTTTTGGGAACAGGTTAAAGGAGACCGACATTTTTACCCCCTCTAGCCCTTGCATGACGCGGCCTCGATCGGCTATA # Right flank : CCCGTCTCGAGACAAGCGAGTGCTCGCAGCTTGGCTAGGGTTGAAACTGAGGCCTTGGATGGCCGAAGCGGTTAGCGCTTCATGGACGAATCAATGTGCACGGCCTAAAACTGGAACAGTAACCCATGCCTCGACTTTGAAGTGTAATACGTCCCTGTAGCTGGGTTTCATCAGGCATCCATACCTTCATCTCCTCAAGCTGCGAAATTGAATTTCGGTTTTTGTTGTTCAGCAGTTATTAGTGCAATCTTTTTATGCAGTTCATTTTGGCGTTGTCTATACTCCTTATCTGCATAGTAAAAAGAGTCAAGGATGATGGAATACCACCAACTTTGTAACTACGAGCTACTCGAACAAGCCTTTGCCCGCGTAAAACAAAATGCCGGCGCTCCGGGGGGTGATAGTCAAACCATAGCGAATTTCGAAGAGGAATTAGCGCTTGGGCTAAATAGCATTTTGTATGATCTCAATCAACAGCATTACGCTCCACAACCACTCAA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGAGTAGCCCCGACTTTGAAGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.10,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //