Array 1 58153-58497 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSRZ01000012.1 Bifidobacterium longum strain TF06-45A TF06-45A.Scaf12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 58153 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 58219 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [58225] 58303 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCGCGGTC 58363 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [58411] 58411 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 58468 27 81.5 0 C.............C.....C....CG | GC,C [58485,58489] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGATGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCGATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2533-1955 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSRZ01000006.1 Bifidobacterium longum strain TF06-45A TF06-45A.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2532 28 100.0 33 ............................ GTGAGTGGAAGTCCTGCATGGCGTATCGCCAGG 2471 28 100.0 33 ............................ TCCCATAGCGCACGGCCTTTTCGCCGTCACAGG 2410 28 100.0 33 ............................ GGAAGGTCGCCCCTACGAGTGCATCGAGGTCAA 2349 28 100.0 33 ............................ GAGCGAGCCAGCCCCACCAAGGAATGTAGATGC 2288 28 100.0 33 ............................ CTTTCACCACAGAGCATACACACATACATGTAT 2227 28 100.0 33 ............................ GGCTCCCGACCTTATCGGACGCCAGAGGATTCC 2166 28 100.0 33 ............................ GAACCCCTTGGACGATGCCATCGAAATCACGGC 2105 28 100.0 34 ............................ GTGGACGACATGACCCCCCAAAACGAGGAACGTC 2043 28 100.0 33 ............................ GCAGATCACGTCGGTGGGACGCAGCTTCATGGC 1982 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 10 28 100.0 33 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CGAATGCGCGACATGATGCAGGACGGCAGACTGCTGGAACGTTGCGTACATGATGTTTCCACTCTCCTCTCGGAGGAGCCCGATAACGAGGACAATTGTTCCGTCTGGACTGGCGGGCAACGATACGGGAAAGCCGGTCAATCGTGGGCACCGTCGTGATACGACTCGAAAGCGCTCCACAAGGACTGCGCGGACACCTATCCCTATGGATGGTGGAAATCAGCAGCGGCGTATACGTCGGAGACCTCAACACCCGGATACGTACGCGACTCTGGCAACGAGTCCTCTCGGAACTCGGTACGGGCAGAGCGACGATGGCATGGCATTCCCAGCATCAGCTACATGTCAGCAGCCAAAACGGAAAGAAGACGATAACCGCTTTCGACGGAACCATCCTAATGTCCAGACCGCCTAAAGCCAAAGACAATACGGCCTGAAAACAGGTACGCAATTTGCATAAACAGCCCTCGCATGGCATTGAAAACGTTGAAAACTAAACT # Right flank : CCCTGTACCAGTTCACGATTGCCGCAATCATCCATGAGTGGGTGCAGGAGCATCTTGAGGAGGTGGAGAAGTAGATGGCGGGTAACTCAAATCTGGGTGCCGCGAAAGACGCAAAGAACGACGAGTTCTATACGCAGCTAACGGACATAGAGAAGGAGCTTCGTCATTATCGCAAGCATTTCAAGGGCAAGACGGTGCTCTGCAACTGTGATGACCCGTTCGAGAGCAACTTCTTCAAGTATTTCGTGCTGAACTTCAACCGCCTCGGGTTGGAGAAGCTGATTGCGACATGCTACGCGACATCACCCATCATGGGTCAGCAGCTTTCGCTGTTTGACGTTGTGGGCGGCGAGGAGGAACAGCGCAACAAACCATACAAAGCTGTGGTGACGAAGGTATATGACACGACGGGCGATGGCGGCGTTGATATGTATGACGTCGCGGAGCTGTTCAAGCAAGGGGAAAATGAACTTGTCGAGCTTGAAGGTGACGGAGATTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 6647-6252 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSRZ01000006.1 Bifidobacterium longum strain TF06-45A TF06-45A.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6646 29 89.7 32 .C..........GG............... GGCGTCGTGTTATGGCTATGCACGTTTGTGCT 6585 29 86.2 32 .C..........GG..............C ATTGGCGATGGGGTTGTTCGCGGCTTGGCGAA 6524 29 93.1 32 .C..........................G AAAGCGCCATTCGAGGATCTCGATGTCCATAA 6463 29 96.6 32 ............................G AACGAAAGTCCTGAACATCTCGCAGATTTTGC 6402 29 93.1 32 ........T...................G CGTCGGCCGAGCTCAATCTGGGTGATGCCTTC 6341 29 100.0 32 ............................. TGGAACGCGCCGTTGCCTGTACTGCAGGCCGA 6280 29 93.1 0 .......T..T.................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.1 32 ATCTACCCCGCACACGCGGGGATAAACCT # Left flank : TCGGATCCGAAAGCATCCAAATGGTCGTTGAACGGCATGAAATACCGCGGGTACGCGAAACCCACGCGCATGGAACAAGCCTCATGGTACGCATTCGGCCTATACGCCTACCACCAGCAAGGCAACCAATACAAACCCATGTACAAGGAAGGCGAACGCTTCAACAAAGCATTACGGATATTGGCGGATACCGGCGAAGACGTTGACGAACTTTACCGGAAACTGTTGAACACCCACAATATGCAGGAAGCCGCACCATTCTGTCTGAGAATAATCCGACTGTTGAACGAGCACGACATTCCACTGGACCACGCCCTGCTGGCATTGGACTTGGCCAGACTCAACAAACCGGACTCCGCAGACATGGTACGACGCGACTGGAGCCGACTGCTCGACTGATTGTCCGCCAGATTGCCAGCACTGGACAATCGGCTCAGAAAATAGGAACAAATTTGCATAATAGACCCATGCATGGTCTCGAAAACGTTGAAAACTAAACT # Right flank : GTGAACCACTTTTATTGACATCTGACTTTTATCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAATCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACAACCGGCTACACAATGCCATCACAACCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGTACCG # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACCT # Alternate repeat : CTACCCCGCAGGCGCGGGGATAAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //