Array 1 7610-5592 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYMW01000002.1 Listeria monocytogenes strain CDPHFDLB-F1610030-049B F1610030-049B_Contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7609 36 100.0 30 .................................... GTATTGACGAATACTACCGTAGAAGTATTC 7543 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 7477 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 7411 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 7345 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 7279 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 7212 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 7146 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 7080 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 7014 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 6948 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 6882 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 6816 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 6750 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 6684 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 6618 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 6552 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 6486 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 6420 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 6354 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 6288 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 6222 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 6156 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 6089 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 6023 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 5957 36 100.0 30 .................................... AAATAATTTTTTTGATCATGTTGCAACAGC 5891 36 100.0 30 .................................... TGCAATATTGTCTGGATCTTTTTTCTTGTT 5825 36 100.0 30 .................................... AGTTAGATAGATAAACAAACTAAACAAAGG 5759 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 5693 36 100.0 30 .................................... TGTCTGAATGTAGTTGATATCTTTAACTTG 5627 36 72.2 0 .........A..CA.....C.....A.C.A..C.TA | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.1 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GAGACAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAAACTATCTACATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAAGGACGGAGAAAAGTTTCCTCATCTCTATATATACTAGAGTGGCTTAGACTTCTTAAATCCGAATTTTGAAATGAATGTTGACCAAGATAAAGATATAAATAAATTGTTTCCCTATTCAATTCGTTTCAACTCAACTTGCAAATTTCAAGTTGCTACAAGCAAAGGGGATATACCGTTGAAAGTGGAGGAGCAAAATAATTGTTACGAGACCAAAAGTTTAAAAATTTTATATGATTATATTCTAAATGCGAGTAAAAATGGTGACACGCTTGAACTATATACTGTTTGGACAGCGAGAAAGATTTACCGTTAACGCACAAACCAGAACTGCTTTAACTATCGGAAATCTAGTTTTAAGTGACAGAGAGCTATTAATAATTAAAAGTGAGACAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 281844-282584 **** Predicted by CRISPRDetect 2.4 *** >NZ_NYMW01000003.1 Listeria monocytogenes strain CDPHFDLB-F1610030-049B F1610030-049B_Contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 281844 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 281909 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 281974 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 282038 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 282104 29 100.0 35 ............................. CGCTCTGACCTGTTCCTTGTGCAACACTCGTTACA 282168 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 282231 29 100.0 35 ............................. CTAAAACATCCTTCACTGTATCAACTCCTTTCTAT 282295 29 96.6 36 A............................ AAAATAGGAGGAAATAAATTATGACTATCAAATTAA 282360 29 100.0 35 ............................. TTTGTTGAATCAACGGATATAGATTTTACAATTTC 282424 29 96.6 37 ................A............ TTGGTTCCTTTGGAAAACAACAATAACGTGTAGTATT 282490 29 75.9 36 ......T.C.A.C...CA...T....... GCAGAAGCAGCAAAATAACCAAAAGTAATGACTTTC G [282513] 282556 29 79.3 0 ......A..T....AGA......A..... | ========== ====== ====== ====== ============================= ===================================== ================== 12 29 95.7 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TGAAAACCTGTTATACATAGGATTATCTATTTCCGTTATAATTATTCCTTGCAAATAAATTCCAAAAAACAAACCCCTCATTAATTGGGTTTGTTTTTTTGTGAATAATTATAGTCAAACGAGCAATCTGTTAACAATTTAGCAATAAACGCAATAAAAAGCCGTTTTTTCACTATGGATTGTACTATAAAACATAATCTACCTATGCTAAAATTTAAGGGAAGGTAAGCTGAATAATACATATAAGGAGGACTCTACTATTGAAAAAGATTCTAGTGCCCATATTATTGTTAGCAACAATCTTAGCAAGCTGTTCCTCGCCGAATGAAAAAATAACCAAAGACACTAAAATATCCAAGACTATTACAATAAGAGCAGATTACAAAGTTCCAAAAGATATTAAAGAACTTGAGGATGATAGTGCTAATATTGTTAAAGTAAAATTTCTTCAAAATAAAACGATAGGCAAGGATGGTAGTACTATCAGCGAGATAGAAATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //