Array 1 970-9 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDQ01000107.1 Caenibacillus caldisaponilyticus strain B157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 969 30 100.0 37 .............................. TCAAATAGTGGTATATAAAACGTTATAAAGTATTTGA 902 30 100.0 36 .............................. AAGTTTTTGAAAGAGATAATTATACTTGTCAAAAAT 836 30 100.0 36 .............................. TTTCCGAGTTCACTTGTTCGAGCGCTTCGATCAGTT 770 30 100.0 37 .............................. TCATCCCGCCATATGATACCCGTCAGGCTGTCCCAAA 703 30 100.0 35 .............................. CCCAGCGCCGTAAGTTTAGCGGTATGTCTCAATAA 638 30 100.0 37 .............................. ATGGTTCCGGATGAATGGCTAGTTGAGTATAGCAGAC 571 30 100.0 36 .............................. TATTTTGATTCGGCCGTCGTAGCCGCGGCGGCCTTC 505 30 100.0 36 .............................. TGAACATTCCGTGACGGTCGGTTACATAGTCCACAA 439 30 100.0 37 .............................. AATTTCTCCAGTTAGGCCACCGGAATAGCTCAATTTG 372 30 100.0 37 .............................. AAAGCAAATCGGCGCGTTGCCCCGATGCCTAAATGGG 305 30 100.0 38 .............................. TCTTCCAACAAATGAATACCCGCATCTCCCGCATTTGG 237 30 100.0 36 .............................. TTGCGTTCGTGAAACTCATTACCATGTCAATCTTTT 171 30 100.0 36 .............................. TTTTTTGGGAGGGGTGGAGCATGAAGATCAAGGTCC 105 30 100.0 37 .............................. TACGCTGCTCCAACCGCTTTCCCATATTGGAGAAAGC 38 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 100.0 37 GTTTAGATCTTACCTATGAGGAATTGAAAG # Left flank : CGTGTCTGGATTTGCAGGATTTTGTTGTGCAAACTCTGTTCCGTTTCCCCATTGACTTGGTGGAAGGAAATTCGACCCCGCCGGATTGGGCGAGGGAGCACCGACCTCTTCGGTGGGCGGGAAAACGGGAGGGGTGTGGCCGCCATTAGATTGGCCCCTTTTTATTCAATCCGCGCAGGAAGCCGGCGCCCGCCCAGTAGATCGATGGATATCAGTCCGGCCTTTCTGCCCAGGTTTTTGGTGGTCACAAGACCGAAATCCCCGTTTGGTATATTTCTCGATAAAAGCCAAGGCATGTGAGCCGGATTTTCGAGTTAAAAGCGATGCCTGTTTTTTGTCGTCGATCGTCGGTAGCGCACAAACCCCGGGGGATCGACGACAAGAACAAATTGTTGGGAAACCCTATCCTATCGCACTTTTCGACAGGGAGAGATCATTTTTTCTTTTTCAGGAGGAGTTTTTATCATGATGTAGAATACTTTAATATCAACCCAATTTGG # Right flank : GTTTTTTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGATCTTACCTATGAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 26-922 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDQ01000003.1 Caenibacillus caldisaponilyticus strain B157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 26 29 100.0 40 ............................. GTTTTTTKTTTTGGAGGGTGGAGCATGAAGATCAAGGTCC 95 29 100.0 39 ............................. GTATTCGCTGTCCATGTAATAGACCGGGATTCGGTCCGT 163 29 100.0 37 ............................. GTTGAAAATGCCGGCCGGATTGGGCTGCCGATCCCAG 229 29 100.0 37 ............................. GTTTTTGGAAAGGAGCATAGCCATGGATCTGGACATT 295 29 100.0 39 ............................. GTTTTTCCGCAAAATCCCATCTTGTCCAAGCGTATGACC 363 29 100.0 38 ............................. GCAGCGACATCATCGAGCTTTTGGCGAATGGCAATGCG 430 29 100.0 37 ............................. CTGGAAAACCCACATTGGGTAATCCTCACTCCAAATC 496 29 100.0 37 ............................. CTCGGCCTTTCCAACCGGCTCACGGTTCTCATACCAA 562 29 100.0 37 ............................. CCTCAACTCTCGGAAGCACAAAACATTCCGGAGTCTG 628 29 96.6 39 ............................G CCCATCCGGTGTATCGCTCATTCCGTTCCCGTTTGCGTC 696 29 100.0 37 ............................. CTTGGCATAGTTGTCGGCATGGTTGTCAGCATACTTG 762 29 100.0 37 ............................. CTACAACAACGGCGATGAATATTTAGAAGGCTACATT 828 29 100.0 37 ............................. CCTCAGGATGGAATATCGTTCGGCCGGTTGGATCACC 894 29 93.1 0 ...........................TG | ========== ====== ====== ====== ============================= ======================================== ================== 14 29 99.3 38 GTTTAGATCTTACCTATGAGGAATTGAAA # Left flank : ACCGCTTTCCCATATTGGAGAAAGCG # Right flank : GCTTGTCGTGACGTTCCATATGATGAGTGATGGCCGTACGTAACCCGTAGTCCCCTTACCGGAGGCTTGGTCATCAGGTCCCCGAGACGGATAATTCTCTTACGGACGGGAGTGAGAATTGAAAAGCAAATAAATGATTGTCTTCTTCTTAGCAAATGAAGTATGAGAAGTCTGCAAATACAATGGCCTATTCCAAAAGGGAAAGGTTTTCTGTACAAAACAGCAGACGGAAATCAATCCGCCCGGTTAAACAGCCTGAGTCCCGTTGTTCAAAGGGACTCAGACTGTTTCGTTCTTCCGGAGACCCTATCTTTTATGGCTTCAAACTTTTCTCAGTGAGATAAAAGTTTGAATGAATGGAACGAGTTTTGTAGAAAAATTTCGAATCCAATGGCCGGAAAATCATGTATACTTATTTTTGGGATAAAAAATATTATTTACAAATTTACGGCATCTGAGGCGTTAATCGATTAAATGTTTGAGAGGTGAGCGACGATGCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGATCTTACCTATGAGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 69533-66912 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDQ01000005.1 Caenibacillus caldisaponilyticus strain B157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 69532 30 100.0 35 .............................. TTCAGTCTAAGGAGGTGATCCCGTTGTTCAAAATC 69467 30 100.0 37 .............................. CCAGGCTGATACGGGAATTTGACGACATGCCATTGGT 69400 30 100.0 38 .............................. TTAGCACAATTTCATCGTCATACGTCGCCATCTTGATC 69332 30 100.0 36 .............................. TCGGTCAGTTTCGCGAATTGATCGGCCAATGCTTTC 69266 30 100.0 37 .............................. AATTAACATTTTCCTTTTTTCTTGTCCCATTTTCTTC 69199 30 100.0 36 .............................. ACGGTTCACACAAACAAATTATACATAATCCGAGAG 69133 30 100.0 38 .............................. TCGAAACTGAAATAGAGAATTATGAAATTGATCATGAT 69065 30 100.0 35 .............................. TTCCAAAATATAATGGACATGATTTAGGCCTACGA 69000 30 100.0 37 .............................. TAAAACTCTTTTCTCCGTTAGTTTCTTGCGACACAAA 68933 30 100.0 37 .............................. AACATAGCGGGCGACCCCTTTCGCGACCGAATTGACC 68866 30 100.0 37 .............................. CGCTCCAATGCGTGCGAAGGAATATAATCCGCCAAAC 68799 30 100.0 36 .............................. TGACCTGATTTTCGATTTCCAATAGTTCGACGATGG 68733 30 100.0 35 .............................. TTGGGTTGATTTGAAGAGGCGGCGATGTCAAGCGC 68668 30 100.0 38 .............................. TTTTCTGATTATTTATGGTCACAAAAAAATAACCCCCG 68600 30 100.0 36 .............................. TTTCTCCTCAAGCCAAGGTAATTCCCTATATGCCTT 68534 30 100.0 38 .............................. AGATCCACAAGAAGCATCTCGATCTGGCGCTGTTCACG 68466 30 100.0 36 .............................. AGAAGCCGCGCCGATGGTTCCACGGCGTCATATCCC 68400 30 100.0 38 .............................. ATGAGTCCGTATTCATCGGCCTTTCGTCGATGAATGTC 68332 30 100.0 36 .............................. TTCCAAACCGTGAAACGCATCGATGATAAAGCGGAC 68266 30 100.0 36 .............................. AACGAAACTAAACTAAACGAAACGAAACGTAAAAAT 68200 30 100.0 36 .............................. TGACGATTTTGAGTCAGGCGCCGAACAACAATATAC 68134 30 100.0 37 .............................. TCAATACTCTCTTGGCCGGCAACCTCGGCGCCGAAAA 68067 30 100.0 36 .............................. TTGCACAATGCGTTAGAGAAGTTGACAGAATTAAAT 68001 30 100.0 36 .............................. TGCCAAGAAACCACTTGGACTCACCGCCGGGACTCC 67935 30 100.0 36 .............................. TCAGCAGTTGTCTCTTTTTTACTTGTTTCCTCTTGC 67869 30 100.0 36 .............................. TCTCCGTCCGGCGCCACATGAAGGTGATTTTTCAAA 67803 30 100.0 36 .............................. TTGTATTGCAATTGCATTTTTTGTTTTTCGATGTCG 67737 30 100.0 36 .............................. TTTTGATGATGTCATCGTCCGCCGCATGCTCGTCGG 67671 30 100.0 38 .............................. ATGAATTGGAGGCGCAAATCGCATGAAAGTCGAAATCG 67603 30 100.0 36 .............................. TCGATATTACTTTGCCGTTCTTTCTGTTTGATTTCA 67537 30 100.0 36 .............................. CGGAGCAAACCGGGAGGAAATCGGAACTCATCGCGG 67471 30 100.0 37 .............................. CAATAATGACTGGGATTATGCAACCCGTAGCCAAGCC 67404 30 100.0 35 .............................. ATTTGTCCGAAGCTCGACTCAACATCTTTCGCCAT 67339 30 100.0 37 .............................. TACTGCATGAAAACCGTAAATAATCAACGAGGATACA 67272 30 100.0 36 .............................. CGTTAAATCCGACGGGATCATATCAGTCCTTTTCGG 67206 30 100.0 37 .............................. ATACCACTCCGAATCGATGATCGTCCGGCGGTCGACG 67139 30 100.0 35 .............................. TCGTTGCTTCGTGATCGTCGGGTAACTCAATTTCA 67074 30 96.7 36 .................G............ CGGCGAGCCGGTAGCACAAGGCCGGCCAAGATTCAC 67008 30 96.7 37 .................G............ CGCGGTTATTGGCAATGGCGATGGACATCGCCCTTTT 66941 30 96.7 0 .C............................ | ========== ====== ====== ====== ============================== ====================================== ================== 40 30 99.8 36 GTTTTGATCTTACCTATAAGGAATTGAAAC # Left flank : TTTCAATACCATTTCGTCTACCTCCCTATGGTTCCTACGAATGAATGTTTTTGATGGTTTCAAGATGTTAAAAAGGGATAGGATTTCGCAACATTCATTACATGTTGTGTGCACCGTAAAGGATATAGGGATCCGTTGTGCTCGGACATGTTCACCTACTTTACGGCGAAGGAACGGTGAAGCAGGAAAGTCGTAAGTGATGTTTCAGACGGGATGGACGGATGGCATCGGGCGAGGCTACATTTTGTGTAGAGCGTGCAAAGATTTGTTTCTGTGAAATCCTGACGAAGTGGTAATATAAAAACAAAAGCCCATGCGGCCCATGCTCAATTTTTGTCGTCGACCCTGAGTAGCGTCAAAAACCCTAGGGATCGACGACGATTGGTGATGTCACTATTTCTTGCCGTGACGCGGCTTTTTTGTAAAACGAAAAAATTTTGTTTTGAAAGGAAGGATTCACGCGCCCGATGAAGAATGTTGATATATCGGCAGTTTTTTGG # Right flank : GTGTAAACTGTGACAATAAACTTTCCTTGTTCGCTACATTTTAATCTTACCCATGAGGATCGAGGCAAGCCACCGCGACCGGAATATTGAAAAAGCAAGCTCGATTGCTGTTTAGATAAAAAATAGACATGATCGCAAACGAAAAGAGACGGTTTGGTCAGCCGTCTCTTTGCATAAATTCTTATAACCGAGAGTCTATTTTTCATCCTAAGTCGTTGGTGAGGCAGTTTGGGTCATCACAAGGTGCTTAATAAAAATTAGAAAAGGGAAAGATATCCATGCGAAAAATGGTGAAACGCTTATTTGTAGCTGCCCTCGTCGTGTTGCTTTTAAGTTCAGGAACCCTTGCTTACCTTTATTTTTTTCACGGTTATCACGGGAAAGATTTGGCCGTGATGGATCCGGATCATAAAATCCAAGACGATACCGACGGGGACGGCATTCCCAATCTGAAAGATCCGGATGCGGATGGGGACGGCATTTCGAACGCCCAAGATATT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCTTACCTATAAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 7820-677 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDQ01000012.1 Caenibacillus caldisaponilyticus strain B157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 7819 30 100.0 37 .............................. TTTTTTCTATTGCATCCTTTTGTATATCGTGGTATAG 7752 30 100.0 37 .............................. TTCCAGCGCTTACACGCTGGACGGCGACCACTGCCGA 7685 30 100.0 36 .............................. TGCTATGTTTGTAGTTGACGACAGGGACAAACTCCC 7619 30 100.0 38 .............................. TGCTATGTTTGTAGTTGACGACAGGGACAAACTCCCTG 7551 30 100.0 35 .............................. TCTGAGAGCCGAGTATAGCCCGGAACTGTAAAGAG 7486 30 100.0 34 .............................. AGCAACATGCTGAAAGCTATTGAAAAGCGGAAAG 7422 30 100.0 36 .............................. ACAGCTTCAACATCGGACATGTATGCTCCGTCCCAG 7356 30 100.0 37 .............................. AACGCGTTTGGTCTCAAAGCGAACGAATCGTCAAGAG 7289 30 100.0 36 .............................. TTTTCTAATTTCTTTTCGAGCTCCTGGATTCGATGG 7223 30 100.0 41 .............................. TACCTTACCGAGCGCTTTCGCCTCGGTTTAGCGGCGCCTAG 7152 30 100.0 35 .............................. TCCTTTCAAAGAGAAAACAGCCAATCAAAAATATC 7087 30 100.0 37 .............................. TGGCTGCATCCTCGATTTTTGCCGTCGTAATAGCACC 7020 30 100.0 36 .............................. TCTACCGGATCCCCGTTGGAGACTTTCCATTCCACG 6954 30 100.0 37 .............................. TCTTTCTTGTTTGTGTTCATTTGCTGTTCATTTGCTG 6887 30 100.0 37 .............................. ATTGAAACACAAGTTAGGTCCGTCCGTCTCGACAAGT 6820 30 100.0 37 .............................. TTTTTTGGTTATATTTTTGGTTAGTATTGTCGGGACA 6753 30 100.0 37 .............................. TGCTAATCTCATTCAATTTTTGTTTGACCTCTATTTC 6686 30 100.0 38 .............................. CTAGCTTGTACAATGGCACATGATGTTCGTGTGCGATT 6618 30 100.0 38 .............................. TCGCGTCCAGCGCGTCCCGCATCCCCGATGTATCTGCG 6550 30 100.0 38 .............................. AGCGTTGGAATCATAAGCCAGCCATTTGTTCCGCTTTC 6482 30 100.0 37 .............................. AATCGGCGACTGAGGTCTATGATACGACCACGGCGAT 6415 30 100.0 36 .............................. TCCAACCGATAGAATGCACCGCTAGATTAGTAACCA 6349 30 100.0 36 .............................. ACAAACCCTATAAAGAAACCGAACCAGGTGTACTCT 6283 30 100.0 35 .............................. CCAAGAACTTGTTCAGGTTGGGCGGTGTACAGCGT 6218 30 100.0 37 .............................. TCGGCAATTTCTTCTTGTGTCAGGTTCTTCATTTTGC 6151 30 100.0 36 .............................. TATACCACTTGAACAGGTTTAAAAAATGCTAGCAAA 6085 30 100.0 35 .............................. TTCGTTTTGGCTCCGAGATCCTTGTTCACAATGGC 6020 30 100.0 36 .............................. TTTCTTCCTTCCTCGTCATCGCGCCGATATTCGATG 5954 30 100.0 36 .............................. CGGAAATAAACAAACTCATCACTTCAATGGATGAAA 5888 30 100.0 36 .............................. TTGCATCCCGCATAGCGGCATGGGTGCAATGGTTTA 5822 30 100.0 37 .............................. TTCTTTTGTTGCTGCTTGCCCACCGCTGCTCACCCCC 5755 30 100.0 37 .............................. CGGTACGCTCAATTCCGCTGTAAACGGTTCGATCGAT 5688 30 100.0 37 .............................. TTCAGCGAAAAATACGGATCGTCCAGCAATGAAGCGA 5621 30 100.0 39 .............................. TATTTCCTCATTCCATTTTTCAGATTCGGGCCAACGCCC 5552 30 100.0 36 .............................. CCGTTTTTTAATCGGCTTAGATATTCTTTGGAAATG 5486 30 100.0 37 .............................. TTCTTTTGTTGCTGCTTGCCCACCGCTGCTCACCCCC 5419 30 100.0 36 .............................. TCCTGCACTTTCCGCTTGGGGAATCGTACGAAGGAA 5353 30 100.0 38 .............................. ATATTTTCCACGTCTATTGCGTCCAATTGCGCAAACTC 5285 30 100.0 37 .............................. TTGCAAGCAGTTCGTGGAAGCGTTTTTCCATCTTTGC 5218 30 100.0 38 .............................. AAGAGGGTGAATGAAAATGAATCTTCAACGGCTCTTTG 5150 30 100.0 35 .............................. TCTGTTGAGTGGCGGGAAGCTGGTGGAAATAGCAG 5085 30 100.0 35 .............................. CTTCTCCGCGCTCATTAAACGTAAATCCATTTCGC 5020 30 100.0 35 .............................. TTGGCGTTAGCGCATCGCCAATATTGATTTTCATC 4955 30 100.0 36 .............................. ACACGATCTTGTGCGCGCCGAACGTGTCGCGGCAAA 4889 30 100.0 36 .............................. TCGAAAGCGGGAAGGATCAGGAGATCCTCTATCAGC 4823 30 100.0 35 .............................. TCGAAAGCGGGAAGGATCAGGAGATCCTCTATCAG 4758 30 100.0 36 .............................. CATCCTCAAATTCGGCCACATCTTCGCGCGTGATCA 4692 30 100.0 37 .............................. GAGACTCTAGAAAAAAATGGTTATATACGGGTCACGC 4625 30 100.0 36 .............................. TATCAAGGATGGTCATATTGAATTTTCCGGAACCAT 4559 30 100.0 37 .............................. ATAGTTCGGGATTTTCATAGATGTTGCCGATGACTTC 4492 30 100.0 36 .............................. TTTTTCGATACCCATCCGTCACCTCCCCGCAATCCA 4426 30 100.0 36 .............................. CTTTTTTGGGGGGTGGTCGTCGTTGCTGTCTATCTT 4360 30 100.0 37 .............................. TTTGAATCAAAATGGCATTCCAACAAAAATGGGGAAA 4293 30 100.0 36 .............................. TCCCTCTGCGCCAACTCATTCATAAGCTCTTTCGTC 4227 30 100.0 37 .............................. AATCTGTGTTCAGCAGCATTTTCAAGGGCATGTACAA 4160 30 100.0 36 .............................. TCGTCTTGTTTCGCTTGGTCCTTGTGGCTCGATGTA 4094 30 100.0 37 .............................. ATATCGGCTATCAGGACGGGCAAATCTCGAAAGTTCA 4027 30 100.0 38 .............................. TCAACGCGGAAGGCTTGATCTTTTGCTTTTGAGAAATC 3959 30 100.0 36 .............................. CGATCTGCGGTTGTGGATAGCGATGTGAAATTGTGG 3893 30 100.0 36 .............................. TTTGAATCAAAATGGCATTCCAACAAAAATGGGGAA 3827 30 100.0 37 .............................. TTCCCGTGATGTATTCACGGTTATGTTTGAGGAAATG 3760 30 100.0 35 .............................. CCACCATCCCAGATAATCCCTTCGCTTCCGCCCGG 3695 30 100.0 37 .............................. TCCACTGTCGACTGATTCGCTTTGAGCGCGATTTGGT 3628 30 100.0 37 .............................. ACGTTTTCCAGTCGCTGAAATCGCCCTCTGACGCATC 3561 30 100.0 36 .............................. TCGAATTGAAACGATCTATACACTGCTCCAACCGCT 3495 30 100.0 35 .............................. TATATTTACGGCCACTATAATTCTGTGGAAGGTAC 3430 30 100.0 37 .............................. AATCATTTGCCGAGTTCGTTGAATGGATGGATGACGA 3363 30 100.0 36 .............................. TCGACCCGCCGGCCTTCATCCGTAAACTCGTCTTCG 3297 30 100.0 36 .............................. TTCAGACCGATGTGCCCGGCCGCCCAGGCTCATATA 3231 30 100.0 36 .............................. TCCCGAATATGGGACAGATCCGTGAGATCCGTCAAT 3165 30 100.0 36 .............................. AATCTCAGAAATGAAATAATCTCTAACATAATTTTT 3099 30 100.0 36 .............................. CTGACTATAAAAATCAAGCAAGTCTTTTGAGAAACC 3033 30 100.0 36 .............................. GCAATGTCCTTGCCAAAAACTTGTCTTCTAAATTTT 2967 30 100.0 35 .............................. AAGGAGGTGGCAAAATGAAACCGTTAGACTGCAAA 2902 30 100.0 36 .............................. ATCGGCGCCCGTAAAGCCTTCCTGATCGTCACGGGC 2836 30 100.0 35 .............................. AACGCAAGTCATCATAGAACTTGCAACCTTTCCCA 2771 30 100.0 37 .............................. TGTGGAGGGAGTATTAGGATCATGGCCTGCGGTTCCA 2704 30 100.0 37 .............................. GTCCACCTTTTGAAAACTCTTTGATATGGTGAATATG 2637 30 100.0 37 .............................. ACGCTCGAATAAGGTCATTAAGCTGTTTGTCGTTTAG 2570 30 100.0 37 .............................. CGGCTTCCGCCGACCATTGGGGCGGTAGCCCCTAGGT 2503 30 100.0 37 .............................. ACGCTCGAATAAGGTCATTAAGCTGTTTGTCGTTTAG 2436 30 100.0 37 .............................. TTTTGGGAATGTGTGTTCTATCCATAAAAGGCGAACA 2369 30 100.0 37 .............................. TAAGCTCCCTCATCGGCGATAAGTTCGCCTATGCAAA 2302 30 100.0 36 .............................. TATTGGAAAAATTAGATGGAATCATCGCAATGTAGA 2236 30 100.0 37 .............................. TTACTTCGGCCGTTTCTTTCCTCGCGCAATATTTGCC 2169 30 100.0 35 .............................. GCGGACAAGAAGCGATGATCTATGACTATCTTTGC 2104 30 100.0 36 .............................. ACGGTTTTCGTAGAAAAGCGTGACCGTCCATCCTTT 2038 30 100.0 36 .............................. ACGCTTGGCCCGGCGATGGACGACGTCAAGGAACGG 1972 30 100.0 37 .............................. AAAATCATCGCCTCCCGTCCGGCGATTAGAAATAGGA 1905 30 100.0 37 .............................. ATACGCCACCGGCGCCGGGTATCATCCCGGAACGCGT 1838 30 100.0 37 .............................. TGAAGCAAGTCCCGCGTCACATTATTTCCGTAATAGT 1771 30 100.0 36 .............................. AATTTCAGACAAGGAGGGTGAAAATAGAACGGTGAA 1705 30 100.0 36 .............................. TGAGTGCCCACATTGCGGGCGATATGTTCCGCCCAT 1639 30 100.0 35 .............................. TTTATACATAATTTTTATAAATTCAAGGAGGTTAT 1574 30 100.0 35 .............................. CGCCTATGGTGACGAGACGACCGTCCCTCTTGAAC 1509 30 100.0 37 .............................. TCCTTATCCTTGCCTTCAACGACGTTGGTAGATTGCT 1442 30 100.0 37 .............................. TGTGAAGGAAGACGATGCCAAATGAAAAACACTTGCT 1375 30 100.0 36 .............................. TTCCCAAACGATAAATAATCCGAATGGTTCAGATAT 1309 30 100.0 35 .............................. AGTGCCAAGGTCTTTTGTGGCGCCGCTATATTCAA 1244 30 100.0 36 .............................. TAATCCTGTAACTTTAAAGGTGACTTTTGATATTCG 1178 30 100.0 39 .............................. TCACGGATGAAAGCGACCCGACCAAAATCATCGGGTGGG 1109 30 100.0 38 .............................. TTGTTTTCTGGCTGGACGGATCGATATCGTCCAGGATT 1041 30 100.0 36 .............................. ACCATAAACGTAAGCCGTCGCCATTTTCAAGCTCCT 975 30 100.0 38 .............................. TTCTACCCATTGGGTATGCTCGTCAATCCATTTGAGAA 907 30 100.0 37 .............................. GAGAACAAAATCAAGGGGTGATAGCGATGGGCTATAT 840 30 100.0 38 .............................. ATCTGATCCTCGGAAAACCCTTCTTTTTTAAGATTATC 772 29 86.7 36 ............A.....G...-..A.... CAAAAATAGTTATGGCCGCAGGAATCGCGGCCTTTT T [760] 706 30 73.3 0 A...T.C...AC...T..G.A......... | ========== ====== ====== ====== ============================== ========================================= ================== 108 30 99.6 36 GTTTAGATCTTACCTATGAGGAATTGAAAC # Left flank : ACGGGATAGAGAAGAGCAAATTTTAAGGGAAAAGCGAGAGCAGGAAAAAAAGCTGGAAGAAGCACGACGGATAGAAGAGGAAAAACGCCTGGCAAACTTACCGCCTGAAGAGAGATTGATCGCAGAAATTCAACGATTAACAGATCATCCAGAGGACAGGGAAAAGAGCAAAACCATATTGTTTGCGGAAGTGAAAAAACAGCAAAATCAAAAAGCTGCCGAAGCGCTTAAAGTTTACTGGCAAAAAACAGGCGATTGGGACGTTAAAAAGAAACAGAAAAAGCAATATGAAAAGGTTCAATACATAAAAGATTTGTTGAGTAAATAAATCCATTTGTGTCGTCGATCTCCAGTAGCGTCAAAACCCCTGGGGATCGACGACATTTTGTGTTAATAAATATCCTTGGTGTGTTGGGCTTTTTACAACAGGAAAAATTTTTTGTTTAAAAAGAAGGATTTAGGACCCCGCTGGAGAATACTGATATATCAGCAGTTTTTGG # Right flank : GTCCTCGCTGTCGTCTTTTTGTCGTAATGTGTTATAACTGAAATAATCAGTAAAAATTGAATAGATTTGAAATCCGGGGGGAGAGCAAATGTCGACGTTGATGAAAGATAAAAACATCGTCGTGATGGGAGTGGCTAATAATCGGAGTTTGGCATGGGGGGTTGCCAAATCACTGCATGCAGCCGGAGCCAATTTAATTTTTACAACAAGAAAAGAAAGGTCTTACCAAAAGTTATTAAAATTGCTTGACGAGGAAAATATAAAATCGCTTTTGAACGTTCATGTCAAGGCCGATTATTTTTTCCCCAAAATCGCCGGTTTAAAATTCCCCAGAAGGACCTTATTGATCCTTCTGTTTTTCTTGTTGGATCCTCTTTTCCCGTAATCGATAGCTTTCCCCCTTTAGGTTGAAAATGATGGAATGATGCAGTAATCGATCTAACATCGCGGTCGCCAATACCGAGTCTCCCACAACTTCTCCCCATTCCCCAAAGCTTTTG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAGATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 21918-19136 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDQ01000012.1 Caenibacillus caldisaponilyticus strain B157, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 21917 30 100.0 36 .............................. TGGTATTTATTACGCGCATCAGCCGCTAACTGCATG 21851 30 100.0 37 .............................. AAAGCAGATGCGGCAAACGTCTATACGAAGTCGCAAA 21784 30 100.0 37 .............................. CGAATGTAATTGAATTTTCCAGAAAAGATGATGAAAA 21717 30 100.0 37 .............................. TTTCCAATTTCGAGCTTCAATTGACAAATATCTATAG 21650 30 100.0 37 .............................. TGGCCATCGTTGCCACAGGTCAAATTACCGTCGTTGA 21583 30 100.0 38 .............................. TTTTTCGATACCCATCCGTCACCTCCCCGCAATCCAAC 21515 30 100.0 39 .............................. CATTCTGTACTTTCACGATTTCGATTTCTGCTTTCGTGG 21446 30 100.0 37 .............................. TCATTGGTCAGACATATACTGTATCGCTTTACATTAG 21379 30 100.0 38 .............................. TTTTTTCTCTTGCATTCTGTATGCTATTTTGGTACATT 21311 30 100.0 36 .............................. TGAGCGCCCCAATCCTCGGCTCTTGGTCATTCGACC 21245 30 100.0 39 .............................. GCGCTTTAAACAATCCTATAGTGTATTTGTCCAGCTTCA 21176 30 100.0 23 .............................. TGCGTCTACCTTCTTGATTTGGA Deletion [21124] 21123 30 100.0 37 .............................. AGCAACCTTTGAATATTGTCATTCTCCCGTTCGCGCC 21056 30 100.0 36 .............................. TTCCTCGACCGCCATAATCCTTGTATTGGGGATATT 20990 30 100.0 36 .............................. ACGCGACGAATGCCCGCATCGACAATTTGGTTGCAA 20924 30 100.0 36 .............................. ACAGAAGACGACTTTCGCGGCGTTATAGAGGAATAT 20858 30 100.0 35 .............................. CACAACGTCAAATCGGCGTGTGCCGGAAAATTGAC 20793 30 100.0 37 .............................. TAGTCGCCGGGGAATCTCAGACGGTCGATGAGACCGT 20726 30 100.0 36 .............................. AATGCCGTTTGGATTTACGATGGTGTGAAATTGCCG 20660 30 100.0 36 .............................. TTGATTCGCAGATACCCGCTTGTTAGTTCTGCTACA 20594 30 100.0 35 .............................. AGAACCGGACGTCACATTCAATGTCGGCTTCCCAC 20529 30 100.0 36 .............................. TCGGTAAAATCAATCTGCTCGCTTCCCCAAACAACC 20463 30 100.0 36 .............................. TTAGTAACTCCGCGGCAAATATTGAGCAATTAAACG 20397 30 100.0 35 .............................. TATTTATGGGTGATCGAATAATCACCCACGTCTAC 20332 30 100.0 36 .............................. TTTTATAATCATCTATCTGATCGATAACATCGAAAA 20266 30 100.0 36 .............................. TCGAATCCGCGCAACATTCCCGTTGTTTTCATTGCT 20200 30 100.0 37 .............................. TATTTTTCATTTGCGGCTTTAATAGCACCATCTCTTG 20133 30 100.0 38 .............................. TCAAACAACAACCATGTATATGCATCGAGGATTGTCGT 20065 30 100.0 38 .............................. TCGTCAATGCCTTTTTCCATGTCAAATTTATCTTTCGT 19997 30 100.0 36 .............................. CCGAGAACCTTACCGGAGTTCTTGAAATCGCCGAGC 19931 30 100.0 37 .............................. TTTCTAACAGCACTAGCAATGGAACAGTCACAATACA 19864 30 100.0 36 .............................. TCACTAAGTCAACTTTTTCAACAACCGTCTTCCCAT 19798 30 100.0 38 .............................. TACTAGGAAAGAACGTATAACAAGGGTCTCCCCAAAGC 19730 30 100.0 37 .............................. CGATTTGCCTGCAAGTTCAGTCAGACGAGACATTCAC 19663 30 100.0 35 .............................. ATTTTTTAAAAGCAAATAAAAAAGCCCTCAAACGA 19598 30 100.0 40 .............................. AAAGGACATCAATGTCCACAAATCCCGAATAATCATGCTC 19528 30 100.0 0 .............................. - Deletion [19499] 19498 29 66.7 36 -AGAT.CC.C.TT................. TGCTTCTTCATAATCATACTGAAGCGCGTTCCGCCA 19433 30 100.0 37 .............................. TTCGTGCCGTCAAAAAACGCGAACGGCGACTTTATCC 19366 30 100.0 38 .............................. GCCGTTGAAACCATCTCAAAAGATCACCACCTTTCAAG 19298 30 100.0 36 .............................. AATTAATCATAACTGTCATTATTTTTCAGCCGCCTT 19232 30 100.0 37 .............................. TACGGATTTTCCCTAACCACTTTTACGGTTTCTGACC 19165 30 83.3 0 .....G...........A.T..G..A.... | ========== ====== ====== ====== ============================== ======================================== ================== 43 30 98.8 36 GTTTATATCTTACCTATGAGGAATTGAAAC # Left flank : TAGTAGGTACTTCTCGGCACGCCAAGGACCGTACACATGGTTTTAAGGTCATAATGGTGTTTGGCTCTTATCTCGTCAATCATGGATATAACAGTGGTTTGATCTACTTCTTTGCGAATATGGCCATAGCTTTTTTTAAGATTTCGTTTTCCTCTTTCAGCCGGTGCAATTCTTTTTGCAGGTTCAGAAATTCTTCTGGGGTAAAAGAGCTCCCGTCATCCAGCTTAACCGGTTTTTGTTTTCTGATCCATTTGTAGATTGTCGTTTCAGACAGGCCATATTCGCTGCAGATCTGTTTTACTGGTGTTCCAGTTTGATAAAGCTCAACCACCATTTCTTTAAATTCAGCATTATAACTTTTACGTTTTTCGCTTGTGTTACCCATATCAGGACACATCCCTTCGTTAATATTATATTTCACTAAAGGGTGTCCATGAAACTATACTAGCATCAGAATTGAAACTCCTTTCAAAGAGAAAACAGCCAATCAAAAATATCCT # Right flank : TCATTTATCTGCGCGTCCTTTTTGGGGCGCTTTTTCGTTTTGTTCTTGCCTGAAATCAGAGCTTCAGCTTATATATTCGTCTGGCTATTGACCGTCCAAATTTTCCCTATCAGGATGGAAAGCTCCATTGCGTTTCCTCCTTCGCTCGGTACTGCGCTTTTTGATGTGAACCATATTAGCTCTCCGGATGATAGAAACGTTCAGCGCTTCCTCTAAATCCCTTTTATGGAAATCAATCGTCAGATAAAGAACTGTCCAAATCTTTTCGAGAAAATAATGCAGATGTGATATATGTCACTGCGTGATCAGCAGTAAATTTTGTATTTTCATATTAGAAACATGAGTAAGTGTCCACATCATCTTCGAGGGATGTGAAAAACCTCTTACTGGGCCACATGAATGATCTCTAAGACATATGTTTGGTCGACAGAAAACAAAAAAGCCCGTTCTTTTTGAGACGTTTGACTCGCCGTTCTTCATCTTTTATTAATCTGGATTAA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 13711-14392 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDQ01000055.1 Caenibacillus caldisaponilyticus strain B157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 13711 28 100.0 36 ............................ TTGTGGTTTCGACAACGGCGGCACCGGCGAAGTTTG 13775 28 100.0 37 ............................ GATTTAGTTGAGCGGTTGCGCCGTCCGTTTCAAGGCG 13840 28 100.0 37 ............................ CCCGCCAAAACAAGACCAGTCACCGAAATGAATTTAC 13905 28 100.0 37 ............................ CTCGGCACCGGTGCTATTTTTGGCACCCGTGCCACAT 13970 28 100.0 37 ............................ CATTTACAACGCCGTCTCAAAGTGATTTGAATCAAAG 14035 28 100.0 36 ............................ TGTGATCGAAATGTGATCGGAGTGATCGGAATTGAA 14099 28 100.0 38 ............................ CCGCATAAAAAGAAACCGTATATGTCGTGTCCGGCTTT 14165 28 100.0 39 ............................ CCGCGACCCAAATTGTACAGTTTCACCTAAAGATTCACC 14232 28 100.0 39 ............................ CGGAAGAGCTTAAATCCAATCATAATACCAGCAATTGGT 14299 28 96.4 38 T........................... TCGGACGAAAACGAGGAATTGAAAAAGCAAATAGCGGT 14365 28 89.3 0 T.....................G...C. | ========== ====== ====== ====== ============================ ======================================= ================== 11 28 98.7 38 GTTGATCTTACCTATGAGGAATTGAAAC # Left flank : GGGATGACCCGATGGATAGGAAAATGGCGGTGCTTTGATAATGCACGCCACGATCTGGCTGGCGCCGATCGTAAATAGCACTTTCATTCAGAGGAAAGCATCACTTTTTCATTTATTTTGTTTGGATGGATTTTTCCTTGTCACACCTATTAGATTTTTAAGTTGAGCAGGCTATTTTGCTGTATAATATATATAATAATGAACTGAGCGCAATTTTCTCTCCATTTGGGGTTATTAGATTTTAATTCAATATCTTTTTTGGATGAAGGAAACTTTGTTGTACCAAATCTTGTTATTCCGTTGTTGTTTCTTGTAGATTTTAAGACGATAGAGATCTGTCGTCGATCTCCGGTAGCGTTGAAAACCCGGGGGATCGACGACATTTTATTTTTGTGGAATTCCTTGATGCTGTATGGTATTTTGTATATCGAAAAAATTTTTGCTTGGAAAAAGGATTTTAACCTTGGATGAAGAATATTGATATATCGGCTATTTTTGGG # Right flank : CCCGTCGTAGCGGGATGTATCCTTTTTGATCAATTGAAACCTTTGTATGCTTTAAATGCGGAACAGGCCAAGAGCGAGGCTCAACACATCCTTCCAGCGGGCGGTCATTTGTTGGGTATGGCTATCGGTTTGCCGGGTAAGTTTTAGGTCGGTGTTGGACAAGTTAACCTAATGGGTTTTGCCAGTCGATTTTTCCGATGTGCTTAGATACAACAATACCTTTGAATTTGACCACTATTCATCAACCCATTACCATATTTTTTATGCCAGTAAGAGTTGGCTCGAAAACCAACTCAAAAGCCCCGATCTGGATTGTTTTGACAAGAGGGTGGCTCAGTGGAATGAAAGATGCACCTATTCTGGAGCATATGGGATGTGGCAGTTTACGAGCGATGGCAAGGTAGAGGGGATCAGTGGGCGGGCAGACATGAACTATTCTTACATTTCAAAAAAGATGTTGAATGAAAAAAGGGCGCACCCTAAACTTTGACATTCGCCAT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 27865-34895 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDQ01000055.1 Caenibacillus caldisaponilyticus strain B157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 27865 30 100.0 35 .............................. ATCAAACTCCGAAGTTCAGACATGGCCCGGGATTG 27930 30 100.0 36 .............................. TTCGTGAATTGAATATCGACGCTGCCCATGATCGCC 27996 30 100.0 36 .............................. TCTATTGACGGAGTGATAACATCTTGGATGAAAGAC 28062 30 100.0 36 .............................. AAGATCGTATCAATAACGCTTTGAAGGCATTCAAAG 28128 30 100.0 37 .............................. TCTCACGGTTGAGATTCGCCAAGGGTTCAGGACGCTC 28195 30 100.0 38 .............................. TCGATCGTTCTCGTCACCGCATCAGCGCCGCCTCCAAT 28263 30 100.0 37 .............................. CATATTTAGTTCGTCAAATGTATGTTTGACGTAATTA 28330 30 100.0 38 .............................. TTGTTGACGGTTACGACGGTATTTCCGTTTGGGTTCGT 28398 30 100.0 37 .............................. TTGCTTAATACCGACTTAATCAAGGTTCGCTATCTCG 28465 30 100.0 36 .............................. CCGTCACCCGATCATTTTCCAAAACAAGGGACGAAG 28531 30 100.0 36 .............................. TTGAGATAGTAAACGTTCTCTCCGTCGCGAAACCAA 28597 30 100.0 37 .............................. TCGGAATGGAGGCGTATGTAACGGTGAAAAACCAAAA 28664 30 100.0 38 .............................. ATCGCTATCTCACTCGGCAATGTTAAAACAGTCATCCA 28732 30 100.0 37 .............................. CGTACCAAACGCGAAGTCAAGCCCCATCGACAACGTA 28799 30 100.0 36 .............................. CATTTCGTTTCAACTGCTCATGCTCACTGACTTCCA 28865 30 100.0 38 .............................. CTGTTTTAATACTGGCTACCATAGTGTAAAATAAGAAC 28933 30 100.0 36 .............................. TCGCGACACTCCCTTCATATACAGTTTCAATTCGGT 28999 30 100.0 37 .............................. TTTCGACAATACGCTCAATCGGTACTTTAAGTTCTTT 29066 30 100.0 40 .............................. TTGCGATTCGGCCGTACATGCCGGAATAGACTTCGGTCGG 29136 30 100.0 38 .............................. TCGGCCGCCTGGTGCGATTCCGGGCGGCTGTAATTTTT 29204 30 100.0 38 .............................. TCAAGATATTCACGTTTAAAAGATTTGAATTCCTCATC 29272 30 100.0 37 .............................. TGCGGCACGATATGATCCACCACCGTTGCCGGTGTCA 29339 30 100.0 36 .............................. TTTTTAAAAATCATACTAAGTTTTGTGTTGACATCC 29405 30 100.0 35 .............................. TGACCAAGCAGTTTATATCCTACACCGTCTACAGC 29470 30 100.0 37 .............................. TGTGTACCGTCTGGTAGAATCTCTAACGATTCTTTGT 29537 30 100.0 36 .............................. TTTGTGATTGCCGGCTGACCGTCTGTTCAAGATTGG 29603 30 100.0 35 .............................. ATAGGAACGGCTGCCATTTGCGCCTGGTCAAAGTT 29668 30 100.0 38 .............................. TGGGTTCGTGATTGGTGAAGGCTATCGAACGCCAGAAA 29736 30 100.0 38 .............................. TATACCGCTGATACATCGCCAACGCGTCGTCCTCGATC 29804 30 100.0 37 .............................. GAGGGCGCCCGACAATCGCCGGGAACGCCCCCTCCCC 29871 30 100.0 37 .............................. CATGACCCCTTTCAATTGCTTAATTCCAAACCGGCGA 29938 30 100.0 38 .............................. AACGCGTCAAATTCCAAAACAATATGGCTATTTTAATT 30006 30 100.0 35 .............................. CTAAACGACTTCGGTATACTGCGGTAGATGTTAAG 30071 30 100.0 40 .............................. TTGTGGTTTCGACAACGGCGGCACCGGCGAAGTTTGGATC 30141 30 100.0 37 .............................. CATTTTCTAGTCTTGCAAACATACTGCCTACGGCACA 30208 30 100.0 35 .............................. ATTCGAATGACCAGTTGATCAAATTTTTCCCGGAG 30273 30 100.0 37 .............................. CCTCCTTTCGATTGGCCTGTCTCATCAGCGACGGGAG 30340 30 100.0 37 .............................. ATTCAAACGACAACGTATATACCTGTCCAGAAACAAA 30407 30 100.0 36 .............................. TTGCCGTTCGCAGTATAAGGCATTATGGCAATTATG 30473 30 100.0 37 .............................. TCTCGCCTACTGCCGCGAACACGCTTGAAATCATCGC 30540 30 100.0 36 .............................. TTCGTCGCTTGGTGTATCTCAAAAAGCTTCCTTAGC 30606 30 100.0 36 .............................. TTTGGCGCAGGGTTTGAAGTCATAATACGGGATAAG 30672 30 100.0 37 .............................. TCCACGCCGGGGGCGTACCGGGTCAATTTAGACAACC 30739 30 100.0 39 .............................. TTTCTCCTCAAGCCAAGGTAATTCCCTATATGCCTTCAA 30808 30 100.0 38 .............................. TATTCGCCCCGCGGGAGGCGATGATTTTCACTCAAGAC 30876 30 100.0 37 .............................. ATGAATCGTGGAAGAGCGTTAGAATGTCGTGATCGAG 30943 30 100.0 39 .............................. TACGCTGCTGCAACCGCTTTCCCATATTGGAGAAAGCGA 31012 30 100.0 36 .............................. CCCCTTTCAAGTTTTGAAATAGTGAAGGCGCCGAGC 31078 30 100.0 37 .............................. TCCAATGCCGAGGAGAACGATCTCGGCAAGTTGTTGC 31145 30 100.0 38 .............................. ATGCTTCATTGACAACGTCTGCAATTATCATTCAATAC 31213 30 100.0 37 .............................. TTTTTTTCTATTGCATCCTTTTGTATATCGTAGTATA 31280 30 100.0 35 .............................. CAGGGTCAATGATAATCGGCGACGGGTACGCGTGC 31345 30 100.0 35 .............................. TTTGCTTTCAAATTGATTTGATTTGTGAGCAACGT 31410 30 100.0 39 .............................. TTGATTTCTCGATAGTCCGAGGCCCTGGGAGCACGTCCC 31479 30 100.0 36 .............................. TCGCTCTTATGCGAGCCATCTGGTAAAATTTCCAAC 31545 30 100.0 39 .............................. TTCGATTTCCAAAAAACCCGAAGGCTACACCTACCGCGA 31614 30 100.0 38 .............................. CTCTCTCAAACGACGAATGGACTGGTTTTTTTGATCAG 31682 30 100.0 36 .............................. ATGTCAAACATCATTGATCCGCAGTTCGCGCAAGTC 31748 30 100.0 38 .............................. AATCTCCGGATCCCAAACACATAGATTTCATGCCCATT 31816 30 100.0 36 .............................. ACTTCGCCACCATACCAGAGATACGGTGACTCAATC 31882 30 100.0 36 .............................. CAGAGAAAAGGTTTATGCGGTTGAGGAAATAGCTGA 31948 30 100.0 37 .............................. AAGGCTATCCCGTCCGAGTTAGGACCATAGATGATCG 32015 30 100.0 36 .............................. TGCTTTTCAGCGGGAAACAGAATCGCTATTTACTTT 32081 30 100.0 36 .............................. ACTCACACTGAAAGTCTTTCGAAATTACCCAGTCTA 32147 30 100.0 35 .............................. CCTGCTAGAAAATAAGACTGAGTTTGCGAAACTGC 32212 30 100.0 36 .............................. CACAATCCGAGTGATAACAGAAAGTACAATCGCAAT 32278 30 93.3 37 ....AT........................ CAGCGGCCAAGGGACTATCGGGAAGGCGGCATCAAGT 32345 30 93.3 36 ....AT........................ GCGTCTGAACATCCGCTTTCCCATTTCGTTCCCATT 32411 30 93.3 38 ....AT........................ ATTTGTTTTCTGTTCATTCCGTACACTCCTTTCTTCAT 32479 30 93.3 36 ....AT........................ TATTGAAGTCTCAGTTCAAGATAAAGTTTATAAATT 32545 30 93.3 37 ....AT........................ ACGTTTTCCAGTCGCTGAAATCGCCCTCTGACGCATC 32612 30 93.3 35 ....AT........................ ATTCCATCGCAAAAGGAATGACGAGCGCATCAAAA 32677 30 93.3 36 ....AT........................ AATATCGGACACCGTCGTACATGTCCCTAAAGTCCA 32743 30 93.3 38 ....AT........................ TATTGAAGGTGTTTCTACAGGCCAAAAATTTCAAACTG 32811 30 93.3 37 ....AT........................ AATAAATGTAGATATATCAAGGGATTTGGTGTATACT 32878 30 93.3 35 ....AT........................ ACATCACAATTACTGGCTATCTATGATTCGGCCGC 32943 30 93.3 37 ....AT........................ AACGGGACAAGGTAACAATGCCCGATCAGACCAGGCT 33010 30 93.3 35 ....AT........................ GCTGGACTTCGGCAGTTTTTCGTAGACAGTTCGTT 33075 30 93.3 37 ....AT........................ TTCAATATCATGCCTCACTTCAATGACTTTCCCAATT 33142 30 93.3 35 ....AT........................ TCGGCGCAGAATGGAGGGATGTTTGATTGAAAAAA 33207 30 93.3 37 ....AT........................ ATATGCACTACGTTCCGATAAAACTCGACAAAGTTCG 33274 30 93.3 36 ....AT........................ TTCGTTTTGGCTCCGAGATCCTTGTTCACAATGGCT 33340 30 93.3 36 ....AT........................ GTAATCCGTACTGATCATGGTGCTTTGTAGGCCTTG 33406 30 93.3 37 ....AT........................ TATACGACAAACGAATGTGAACGGCCAGAACGAGACG 33473 30 93.3 34 ....AT........................ ATGATTCCTCTCCGCCCCCAACCAGCGCTTCATT 33537 30 93.3 36 ....AT........................ TCAAACGCGGAAATATCATATCCGACCAGAAGCGAC 33603 30 93.3 36 ....AT........................ TTTCAACGACCAGTGGGTAACGAAATCTGATCCGCA 33669 30 93.3 36 ....AT........................ TTATATCCAATACGCCGAAATCGTTGAGTATTGGCA 33735 30 93.3 37 ....AT........................ ACAATAACAATTTTCGCCGGACCCGTATCGTGAACTC 33802 30 93.3 37 ....AT........................ GCAAAAGGTTCCCGGCCCTTTTCCGTGATCAGTTCCA 33869 30 93.3 38 ....AT........................ TTCAATGTGAAAGTGTGTGTGACTTTTTTCCATACACC 33937 30 93.3 37 ....AT........................ CAGTCGATTTGTATGAACAAAGCGCGGATAGTGGCAA 34004 30 93.3 36 ....AT........................ ATCGATTTTTTCCTAAGCAATCGCATGCCTAGCAAT 34070 30 93.3 35 ....AT........................ TACGATCTCTTTTCAGTTCTGGACGAGCGATTTCG 34135 30 93.3 37 ....AT........................ TTCGTTTTAGCGCCGAGATCCTTATTAATTATTGCCT 34202 30 93.3 36 ....AT........................ TCTAACCAGCGAAGAACATACCAAAAAGCTGATCGT 34268 30 93.3 36 ....AT........................ TCAATTTCATTCCTCATCATCCTCCTTCATGTAATG 34334 30 93.3 36 ....AT........................ TAAGCGTGTACGACCGATCCATATTCTCGACATCGG 34400 30 93.3 35 ....AT........................ TTTTTGATGCCATAAACATTTTCCCCTGTAATACT 34465 30 93.3 38 ....AT........................ TTTCGAAAACCCAAAGAGCGTGGGTCATTTGGAAATCG 34533 30 93.3 38 ....AT........................ TTCCCGGAACAAGAAGCCATTCTCCAGGAACGGTTTGA 34601 30 93.3 37 ....AT........................ ATCGATCTGACCATTGCTAAGCTCAAATCAAAATTAA 34668 30 93.3 38 ....AT........................ TTACTAATCTTGTACAGACCTTCATATCCCTTAATATC 34736 30 93.3 35 ....AT........................ ACAAGACCGACTGTATGATAGCCTCGATTATTAGT 34801 30 93.3 35 ....AT........................ ACGGAACAAGATGCGGAGTGGATCAAGGCTAATCG 34866 30 80.0 0 ....AT..................G..TTT | ========== ====== ====== ====== ============================== ======================================== ================== 106 30 97.3 37 GTTTTGATCTTACCTATGAGGAATTGAAAC # Left flank : CCCTACCGTTCCATGTGGTAGGTGATTGAATGTTTGTTATTTTAGTTTATGATTTTGCGGAAAAGCGGGTAGGCAAAGCGCTAAAAATCTCGCGTAAGTATCTTAATTGGGTGCAAAATTCCGTTTTGGAAGGCGAGATTTCCGATGCGAACTATTTTAAGCTGAAAAAAGAATTGCAAGACCTGATGGATCCGGAAGAGGATTCCATTATCTTTTACACATTCCGGACACAAAAATATTCCAAGCGGGAAGAATTTGGTGTCAAAAAAGGCGGAGATGAGAATATAATTTAAGAGTTTTTAGCAACAAATTGAGTTAGGGAGAAGTGGCGCATTGTCGTCGATCCCCAGTAGCGTCGAAAACCCCGGGGATCGACGACATTTTGCTTTTTCAACAATCCTTTATGTAGCGCGGTATTTTTGGAAATCAAAAAAATTCATCATGAAAAAAAGGATTTTTATTCCCGATGAAGAATATTGATATATCGGCAACTTTTTGGG # Right flank : AAGTCAATATTTTGGACACCAATAAGTGAAATTTAATTTTGATCTCATGCCATATTTTTCATGACATCGCTGGTCGCTTGACATGGAGCCTCTGCGGGCGTGGTGTTATGCGAAGGGCGAAAGGGGCAATGATTTCTTTCGCATGGCAAACAAGCCTGCCACACCCGCCACTCCATGTAAAGCGGATGCTTGTAAAATTGTGAAGAGCACTACGCTGCCCCTTTGATACTGTCTTCTGTTTCTTGTGGCGTCATATAGCCCAAGCAGCTATGAATCCGTTTCCGATTGTACCAGCCTTCTATAAATTCGAATAAGGCTCTTCTGGCAGCTTGAAA # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCTTACCTATGAGGAATTGAAAC # Alternate repeat : GTTTATATCTTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //