Array 1 208483-208183 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPOZ01000002.1 Lactobacillus helsingborgensis strain F044-1 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 208482 36 100.0 30 .................................... TGAATTATTGCGAGATGCGCATTTTGAATA 208416 36 100.0 30 .................................... TCATCGGGAAGATAATCAGTATTTAATGCT 208350 36 100.0 30 .................................... AGCCTTGTACATTATCTTGACCAACCACAT 208284 36 100.0 30 .................................... TCAATAAAATTCAAATTGACCGAGAACAAT 208218 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC # Left flank : TGATTAGAACATTTGTCAAATAAATTACTTATAAATTTG # Right flank : AGTTACTATTAGCAGATACGAGAGTGGTGCGTTTTAGGTTGTTGTTAAGTAAAAGCAAAAAGTTATATTAAAGTCACAATAAAAGGCCTGCTTTAAAAGCAGGCCTTTTTGTTCCACCTATTTAACCAGCCAATTAGAAAATACAATCAATACTAGTCTTTTACAATATCTACTTCACTAAATTCTTCATGCTAAATAACCAATAATTTTTAAAATACGATACAGACAATGTGGCAAGATCTGCAAATTGATTATAACTAATTTTTATTTACTTTCTTATTGAATTCTCTCTTTGAAACATACTGGATTTTCTTAACATACTGACCTCTATGATCAATTTTGATATATTGCTTAGAAGGGTCGTAACCACCTACTCTTGTGATTCTATATGGAAGTTTTTTACCTGTCTTGGCATCATAAGCTTGAACGTTAAAATACTTTTGCGTATTCTTTTCTACTTGAGCATAACTTTTAGTTTCGGGAATCGTAAGATTGAAACG # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 1330-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPOZ01000003.1 Lactobacillus helsingborgensis strain F044-1 contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1329 36 100.0 30 .................................... AGCAGCCTAAATTTAAACGGCTGAGAAAGC 1263 36 100.0 30 .................................... TAGTTGAAATGGATAATTACTCTCAGGAAG 1197 36 100.0 30 .................................... GTTTCTCAAGTGAATTTGGCATGACACAAC 1131 36 100.0 30 .................................... AAGAATAGGAGATATTTATGCAAATATATG 1065 36 100.0 30 .................................... CATCAATTAAATTAAGTATAACAAAAATAC 999 36 100.0 30 .................................... GTTCTCAAATTCAACTACATCAGTATCGTC 933 36 100.0 30 .................................... TCGTTGATGGATTTTAATGTTGTTTTTGAT 867 36 100.0 30 .................................... CAAGCGATGTAAAGATCACAGAAGATGATA 801 36 100.0 30 .................................... TTGAAAATTGAGCAAAGCGTCATTATCGTT 735 36 100.0 30 .................................... CCGAGTGTATCGTTGACGCGCTCTACAATT 669 36 100.0 30 .................................... ATTTGTCAAATAAATTACTTATAAATTTGA 603 36 100.0 30 .................................... TTATTTCAGCTGAAATAGCACAGCTCATTA 537 36 100.0 30 .................................... CACTAGTGCTAATTGGTAGAGTTAACGAAT 471 36 100.0 30 .................................... CCTGATAAATAGAGATTGTCATTGTCACTA 405 36 100.0 30 .................................... AATATGCAGACGATTTCAAGGATCTTAATG 339 36 100.0 30 .................................... GTTAATAAGACTGGAAAGTCGCTTGCTGAT 273 36 100.0 30 .................................... CCAAAGCCTGCCGTGTTTGTCCTCACGGCG 207 36 100.0 30 .................................... TTCTAATTTAGTAATATGTTTCTTTGCATC 141 36 100.0 30 .................................... GTAGACCATGTGATAAAGATATTGAAGCTA 75 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC # Left flank : CTGAAACTTTGGAAACTATCCGTCTTTCACGTAAGAACGGATACAACACCATGATTTCTCACCGTTCAGGTGAAACTGGTGACACATTTATCGCTGACTTTGCCGTTGCTGTTAACGGTGGTCAATTGAAGACTGGTGCCCCAGCTCGTTCAGAACGTGTTGAAAAGTACAACCGTTTGCTTGAAATCGAAGAAGAACTTGGCGAAGGCGAGCGTTTAGCTACATTCCCAGACAGTGTTGACAAAGACTAATTTGTTAATAAAAAAGCCTGCAATATTGCGGGCTTTTTTAGTGTCAAAATTTTTAAAAATGTGTTTTTAGCATAAATTCAAGATTTAAACATCTATGCTATAATTTAGGTAAATATTTAATTTCTAGAACTGCACTATCAGGACTAGATTGGCTACCTTATTCCTGATATTGCTGCAAAAGCTGGTCGTGTTTCTAATATTATTTGGTTTAATTCAACCATATTATTAAAATTTGATGATAAAACATCG # Right flank : CTTGAAAATTGAGCAAAGCGTCATTATCGTTGTTTTAGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATTGATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 121237-123581 **** Predicted by CRISPRDetect 2.4 *** >NZ_BPOZ01000005.1 Lactobacillus helsingborgensis strain F044-1 contig5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 121237 36 100.0 30 .................................... TTTCGGCAGTAAAAAGTACACTCATTGGGA 121303 36 100.0 30 .................................... CATGTAAATGCTGAGATATCAGGTGGTCAG 121369 36 100.0 30 .................................... GGATTTTAAAAATGTTAGTAACAAATAGAG 121435 36 100.0 30 .................................... CTTAAGTTCCCCCTTTTTGTTATAACTAAC 121501 36 100.0 30 .................................... GCTCTTTTATCCAAACAGGTGGCGCACCAT 121567 36 100.0 30 .................................... CTATATTAGTTAGTTTTTAGATAGCACATT 121633 36 100.0 30 .................................... TATTCGTGATCCCACATAGTAGCTTTGGCG 121699 36 100.0 30 .................................... CTGCAGGAAATGGTCAAGTGACACTTTGCC 121765 36 100.0 30 .................................... AATTAACTACAATAATAGATGATGCTTTAG 121831 36 100.0 30 .................................... AACCAAAATTTACATTTTACAGACTTATTA 121897 36 100.0 30 .................................... ACAAATTAGGCGACATCAACAAAGATATTA 121963 36 100.0 30 .................................... AATAATAATCAGAAGTACTTGGCTTTTCAT 122029 36 100.0 30 .................................... AATAATAATCAGAAGTACTTGGCTTTTCAT 122095 36 100.0 30 .................................... ACGTCCCTATATATGTTGGGGTCGTCATAG 122161 36 100.0 30 .................................... TTTAAGTTCCCCTTTTTTATTATAGCTAAT 122227 36 100.0 30 .................................... TACACTTTCTAGACTTCTATAATCAACGTC 122293 36 100.0 30 .................................... ACGAATAACAAAACGCTAATAGATAGCATT 122359 36 100.0 30 .................................... TAAACTAATTCAAAAATAAGTAATGACTAA 122425 35 97.2 30 .........-.......................... AAAATTTAATATTTGACCTTATGCAATATG 122490 36 100.0 30 .................................... TTTTGAAAAAGAAAAATGAAGATAATTCGA 122556 36 100.0 30 .................................... CCGATTGTATGATTGCTTACAAGAGTCATG 122622 36 100.0 30 .................................... AATGTCTGTGTTTGTTATCACGTAGCGTAT 122688 36 100.0 30 .................................... TTTTGAAAAAGAAAAATGAAGATAATTCGA 122754 36 100.0 30 .................................... CTGAGGCTTTTAATTGAGCCACTTGAGCTT 122820 36 100.0 30 .................................... AATGTATCTACATTGTGATAATATATTAGT 122886 36 100.0 30 .................................... GTATAAAGAGTTAAGGAACAAGAGAGGTAT 122952 36 100.0 30 .................................... GGCGGCTCTACTGCCGAGTCCGTCACATAT 123018 36 100.0 30 .................................... TAGAAAGTGTGAATAAAATGTTATACACAA 123084 36 100.0 30 .................................... AGTTATACATACTATTTTGAAAAAATATTT 123150 36 100.0 30 .................................... AAAGCTGCTTTTTATTGCCCCGAGCATGGC 123216 36 97.2 30 .........................G.......... TTGCCGCAATACCATCATTGTTGTTTAACA 123282 36 100.0 30 .................................... TGGTCCGGTATCATTGACAGCTATGTAAGT 123348 36 100.0 30 .................................... AAGCTGACACAGCAACGACCGGCAAGAATA 123414 36 100.0 30 .................................... TTCGGTTTTGCGCACGACCCTACAGCTTAT 123480 36 100.0 30 .................................... CAATTGTCTATAATTAACGTATGACAAATA 123546 36 80.6 0 .........A..............T..T.A..TT.G | ========== ====== ====== ====== ==================================== ============================== ================== 36 36 99.3 30 GTTTTAGATGGTTGTTAGATCAATGATGATTAGAAC # Left flank : AGTGGGGATATTACTAAAAAGTATATGCCCCATATTGTAAGTAGTTATCTGAAAAATTTAGACGAAGAAAATCGCAATAAAGTGATTAAGTCTTTTTATAATTTAGAGTCAACCTTGCAGGATTCACTTTTACTTGAAGACTTACCTTTAGCAATTAATTTTGATGAAGACTTAAAAAAATTACTTAAATTTACAGAAATTCATATAGATAATAACATGCTAGTAAATCCTTATGGTATAATAGAAATAGTTTTAAAAATTTACCAAACGTGTAATTTAAAATCAGTTCCTGTTATTTGTAATGTAGCTCATTACCTAGAAGAACGGGAGTGGCAAGAGTTAGCTAGTCTTGTCACAGAAATGAATTTAATTTTGGTTGTAATTGAATTCACGACAAAAGAAAATTTGGCAATTTCTAAAGACATACCTTTTTACTATATTGATAAGGATCTAATCGATTGGTATTAGCAGCATTATTAAAATTAGATTATAAAATATCG # Right flank : GTATCATCACGAATAGGCAACAGCAAGTTGAACCTAGATATCTTGGACGGGTAACAAGTATCTATAAAACAGTGTTAATTGGGGTAAACTCTTTTGGCTTTCTTTTAGGTGGTCTTGTTGCCAAAAAATAGGTTCAAGATCAGGCATTGGAATATCAGCAATTGCACTTTTGCTAGTTACCGTAATTAGTATTTATTTGCTGACACCTAAAATAAAGCGTGATAACAAGCCTTAGCAGCAAAAAACTTGGGCAAAAAAAGAATTTAGAGGCAAAGTGGGAAAATGTGAGGTTAAACCTAATTGCTACTTCGATAAGACGGCTGGCTACAATTCAGAAGAAAACAGTAGCACACTTAATTTGGTTTAATGCGATAATTTCATATCCAGCAAAAATAAGAGACTAATAAATTGCTTATTACTGCACAAATTTATTAGTCTTTTTGAATGTAAAAATTTTAAAAAAGTAATTAATTACAATTTCTGCGAATTTAGTTATGAGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //