Array 1 1455753-1455987 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072363.1 Prevotella jejuni strain F0697 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 1455753 35 100.0 31 ................................... TTTCTATTTATTACTTGTTGGGTGTTGAATA 1455819 35 97.1 32 ..A................................ AAAGAGCTGATGATTAGTTGGGGTATTGAAAG 1455886 35 100.0 32 ................................... AATGAGCTGATGATTAGTTGGGGTATTGAAAG 1455953 35 94.3 0 ............G........A............. | ========== ====== ====== ====== =================================== ================================ ================== 4 35 97.9 32 TTGGTTGATGGGTGTTGAATGTTGGGTGTTGATGA # Left flank : GGTCAGCAGGCGGAAGGCGTTGGCGTTGCCCTCAAAATGGGTGATATCCTCCCAGAAATGTGGACTGACACGGTCCTTTAAGCTGGCTCCTGGACCTTCTGTGAAGAATGCTTGCATCGCCTTCTCACCACTATGACCGAAAGGAGGGTTACCCATGTCGTGCGCATAACAAGCTGTCTGTACGATGGTTCCAATCTCTTCAAAGAGCGTACCACGTAACGTTGGGTGCTTTTCTATGAGTTTTCTTGCTACGTCATCACCCAAGGACTTACCTAAGGAGGCCACTTCCAAGGAGTGAGTGAGGCGGTTGTGCACAAAGACACTGCCTGGTAGAGGGAATACTTGGGTCTTGTTCTGCAGTCGTCGGAACGGTGCAGAATATATCAGTCGGTCGCTGTCACGCTTGAATTCAGAACGGTCGTCGTGTCGAAGGGCATGTCGCTCTTCCTGTCCGAGACGCTTGTTGGATATTAATTGTTGCCAGTTCATTGCGGTTGATG # Right flank : AAATGAGATGATGATTAGTTCGGTGATTGAAAGCTACACGCAAAAGTAATTAAAATTGGCTAAAAACAAGTTTTTTACTACATAAAATGTATGAATATGGCTTTAATTGATTAATTTTGTACCTTATTATATAGCAATGATACAGATTAAAGTAATCAATAAAGGGCATCAGCAGCTTCCTGCTTATGCTACTTCACAGAGTGCGGGGATGGACCTCCGCGCTAATATCGACGCCCCTATCGTATTGAAACCCATGGAGAGAAGACTCGTTTCGACTGGTCTTCATATCGCTCTCCCAGTAGGGTTTGAGGCACAGGTGCGCCCTCGTAGTGGTCTTGCCTTGAAGCATGGACTAACCGTTCTGAACTCTCCTGGTACGATAGATGCCGACTATCGTGGTGAAATCATGGTTCTTCTCATTAACTTCTCAGATGAGCCTTTCACCATCAACGACGGTGAACGCATTGCACAAATGGTCATTGCACGCCATGAACAGGCTG # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGGTTGATGGGTGTTGAATGTTGGGTGTTGATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 370022-370418 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072364.1 Prevotella jejuni strain F0697 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 370022 37 89.2 34 T..............A.........G..G........ CCATGATCAAGATGGAATGAGGTCCAATGAAGGA C [370025] 370094 37 94.6 34 ....................A.............A.. TCTTCAAGTCAAATCGTATGTCTGACGTCGTACT 370165 37 97.3 37 ...C................................. ACAAAGACAAATTCATTTGTCTTGATTTTGCCGTGTC 370239 37 100.0 34 ..................................... AGATTGTAAACTCTGCTGGTGGCTTTGTTATTTC 370310 37 100.0 35 ..................................... TCTGACTCCTATGACGATATGGATAGCTTGGTCAA 370382 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 96.9 35 GTCTTAATCCTTGTTCTAATGGAAGATACTCTCGGAG # Left flank : CTATATGATTTACTTGAAATGCATAATTACATACAGAAGCTAATACTTTAGCATACAATACACAATGAGCATTAGTTTCCTTCTTGAATGTAACTGGGCTACATTTATCAGAAAACTTTAATGTCTCAGCAGTTAGCTCAATGCTATAATCAATTATTTCATCTTTAGACATGTTTTTTGTCTTAGACTTAATAATTTCTTTTTGAAACTTTGGAATAGTTATTGAACCATCTCTATTATGGCTTTTTACTAATCCCAAACGAAGAAAAGGAATAACCAAACTTATTAGTAAAATAGTAATTAATCCTCTTTTGAGTAATTTATTTTTAACTCCTATATTAATTAAATAGATAATAACATATAATACTAATACTACTATTATTAATAAAGGTACTAAAAATAAAAAACTCCATCCAAAATCACCATAGTGTTGAAATGAATAATCTAATTGTTCACCCATAATATAATTGTTATTGTTGTTTATATTTTCCTGATTTAAT # Right flank : GAGTTAGGGGCGTGAAGGCTTTGTTTCAGGCAGGGGGAGAGTAGTAAGACTTATAAATCTGAGTTTTATTAACAGAAATTAACTACTTTCTAAGCGGGTGCAAAGGTAGTTATTTTTTGGCAAAATGTCAAGGAGCGCAGGGTCAAATAACGCTAATCAGGAGCGGAAAAACTTATAAGTTCGTTCCTACCTGACGTTTCCAGAAGCGGGAGGTGATATCCTCGAAGGAGCCATCTGGGCACCGGCGGTACATCCGCTGATTAGTACGTGGGGAGTCGAGGCCACCGAGATGGCGGAGATAGGGCCCCACTTTGATATAGTCGAAACGCTGTTGGTCGATGAGTGGGGAGATTGCTGTGCGCCCAGTGTACCAACCAACTTTCAGTCCTTCGTGGTTCTGTCGCACGTGTTCAGCGAGCCTGTCGACCTCAGCCGGGTCGCCATCGCCCCCCATAAATCCCACACATGTTATCGTGTCTTTCGCATCATGAATCAGTGCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTGTTCTAATGGAAGATACTCTCGGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 2 1061387-1064960 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072364.1 Prevotella jejuni strain F0697 chromosome 2, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1061387 47 100.0 30 ............................................... ACTACTACCGTCCAGAGTGTAGCCGCAGGC 1061464 47 100.0 29 ............................................... TTGCAAAAGGTTATCTTTCAGCGTTTGCG 1061540 47 100.0 29 ............................................... TGACAGGCGTTAAGCTGTACAGACGTGAC 1061616 47 100.0 29 ............................................... CTTCGGTCAATCTGTTATCGACGCTATGT 1061692 47 100.0 29 ............................................... CTTCGGTCAATCTGTTATCGACGCTATGT 1061768 47 100.0 29 ............................................... GCTGATCATGTACGAACATCCTACGCTTA 1061844 47 100.0 30 ............................................... AAAATGGTTTGATTACCTCTGCTCAATTAC 1061921 47 100.0 30 ............................................... AAAATGGTTTGATTACCTCTGCTCAATTAC 1061998 47 100.0 29 ............................................... CGTACTTCAAAAATATCATAAACGTCTTG 1062074 47 100.0 30 ............................................... GTACAGACCAACATATTCCAAATACATTGT 1062151 47 100.0 30 ............................................... GTCGTGACTTTGTAATAAAATGCACCGAGG 1062228 47 100.0 30 ............................................... CATCTCATGAGCTAACCATTGTCTCAAAAG 1062305 47 100.0 30 ............................................... GTCTTGCCCTCAAAACATTTTGCGTACAAT 1062382 47 100.0 30 ............................................... TTGATTGCTGCAGTATTTGCAACAGTCGCA 1062459 47 100.0 30 ............................................... CAAATTACGAGCAACACCCTATCGACAAAG 1062536 47 100.0 29 ............................................... GTGTCCTGCACCAAATAAATAACGCTGCA 1062612 47 100.0 30 ............................................... CGCCTTCTCATCCTCGTATCTTTGATTATG 1062689 47 100.0 30 ............................................... TCTTCCTGTTCGTCAAAACATCGAGATTCT 1062766 47 100.0 30 ............................................... CCCAATTCTGAGAATGTCTTAGCGATTGCA 1062843 47 100.0 30 ............................................... AGGTGACGGTACAACTAGTTCAACTATCAT 1062920 47 100.0 30 ............................................... GGCAGGAGATAGCCAATCTTGGTAGCGAAG 1062997 47 100.0 29 ............................................... AAGTCCTCTTCAATATCCTTCATTACGTC 1063073 47 100.0 30 ............................................... TAAGCACTGCCGTCTTGCTACCACTCGTAA 1063150 47 100.0 29 ............................................... TTTCCCTAATGATTATAATTTTTTGAAGT 1063226 47 100.0 30 ............................................... AATGGAAAGCGACAGCCAAAACCGAGATTT 1063303 47 100.0 30 ............................................... AATGAGAAGAGAAAGAATTTACGGTGAATA 1063380 47 100.0 30 ............................................... GGTTAGCCCCCATAACGATAGTACATTGAA 1063457 47 100.0 29 ............................................... TACGAACAAAACTACCATGCTGAAGAACG 1063533 47 100.0 29 ............................................... GGTGTAGATACCATTGTAGCTTACGAACA 1063609 47 100.0 30 ............................................... CGTTTCGCCACTAAGGAGGAAATGGACAAG 1063686 47 100.0 30 ............................................... CTAGAATTGCTCAGATAGTAGGAAGACAGA 1063763 47 100.0 30 ............................................... ATACAACGCCCGGCGTACAGTTGGTACAAC 1063840 47 100.0 30 ............................................... CCACGGTTGTGCGTACTCGTTTGCACAATA 1063917 47 100.0 30 ............................................... ATTGCATGGATATCATTTGCAGTGGCAGGT 1063994 47 100.0 30 ............................................... CTGGATACAAGTACTTCTTCAAGAATGGAA 1064071 47 100.0 30 ............................................... GCTTTCTCTACTACCTTTGAATGGAGAGAA 1064148 47 100.0 30 ............................................... GGTAGGGGAAGAGCAACAGTATAAAGCTGA 1064225 47 100.0 29 ............................................... CGAAACAGAACAAGGGAAATCAACTAACA 1064301 47 100.0 29 ............................................... TAAAGTCAGATGATAATGTTAGTTATTAG 1064377 47 100.0 29 ............................................... TAATAAATTGTAACTTTATCCATTGCTCA 1064453 47 100.0 30 ............................................... ACATACCAAGCGTGTATAGTTAACGGATAT 1064530 47 100.0 30 ............................................... TCATTATCTGAAACTTCCTCCCAATCTGTG 1064607 47 100.0 30 ............................................... TTTTGTGTGTTGGGTTAAAGGCTACCAAAT 1064684 47 100.0 30 ............................................... CTTATAACACTGATTTCGTATCCGCTAACT 1064761 47 100.0 29 ............................................... ACAAGCGCAATCTCAACCGCCAAAGGCTT 1064837 47 100.0 30 ............................................... AGTTACTTGATAAAATGCTAAATGGCGACG 1064914 47 97.9 0 ..................................G............ | ========== ====== ====== ====== =============================================== ============================== ================== 47 47 100.0 30 GTTGTACGTGCTAATGCAAAGATACACATTTTGAAGCAATTCACAAC # Left flank : ACAACTGCAAGTCTTGCGAAGTGCTATAATGGGGAAGCTCGTGAAATTTCTTATCCTTCCTTTCTTTGATGCAACGACTTAGCGAATATAGGGTTATGTGGGTAATGGTCTTTTTTGATCTTCCAACGAATACAAACAAGGAAAAGCGTGCTTATACTATCTTCCGAAAAGATTTGATGAAAGATGGTTTTACAATGTTTCAATTGTCAATCTATGTTCGTCATTGCGCAAGCAGAGAGAATGCAGATGTTCATGTGAAACGTGTAAAATCATTTATGCCTAATTCTGGTAATGTCTGTATTATGGTCATTACTGATAAACAATTTGGTGAGATAGAGCTTTTTCGTGGAAGTCAGCCACAAGAGCCTAATGCTCCAGGACAGCAACTAGAATTATTCTAAAAAAGAGTCCCATCATTGTGATAGGACTCTTTTGTTTTGCATTTTTTTTTGTACAAAAGTCTTGTTACTTGCTGTAATACAGGTAAATATAACTTTTAA # Right flank : CAGAGGAATAATTCGATTTACGTAATTCAGTGTTGTGTGTATTCTAATGCAAGATATACATAAAATAATTATAAGAAGATTATTCCCACCTACGCCTTCTTACCTGACACAAGGGTGAAGATGATGAAGAGGCCTATAACGAAGATGAAGAGGAAGGAACCTAATGCACCCGCATAGATACGGCCGGTGTGAACCTCTAAGGCAAGACTCCAGAGCGACATGGGCTTGTTTTTTAGTGTGTCTGGCTGTTTTGCGAATGAAGAACCTTGGAAATAGGTGGCTATACATTCCTTGTTTGTGAAGTCAGAACTATAGCCAGAGATTGTCTGTTCGTCTGGAGCTGTACCCGGTATACCTGGAGTAGAGACCATAGCATCGTTGTAGTAAAGCACTGCATTGCTCTTTCTATCCCAATAAAATAGGCCATCGAAGGAGCCTACAATCCATGCTTTGTTATTTGCATATTGCCAGACATTCTGTCCCATAACACTCACTGGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTACGTGCTAATGCAAAGATACACATTTTGAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 3 1130602-1125717 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072364.1 Prevotella jejuni strain F0697 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 1130601 37 100.0 36 ..................................... TGCATCTGGTATTTCTATTGAAGATACCAAAGCTTT 1130528 37 100.0 34 ..................................... TCTCTACGTTAGCGTTGAAAGTGAAGATTAAGCG 1130457 37 100.0 38 ..................................... CCTACGTCTTCGCTGTCAGCTGACCAGCAGAAGCATGC 1130382 37 100.0 34 ..................................... CTTGCGAAGACTACGCCTCCTTCTTACTTTCTAA 1130311 37 100.0 34 ..................................... TCAATCACAAAGCTATTTATTTGGTAGTTTCTTT 1130240 37 100.0 36 ..................................... GGTTCGTGTACGTTGACCTAAGAGATTGTTTTTTTT 1130167 37 100.0 36 ..................................... TCTCTATTGGAGAGTTGAAAGTGAAGACGATACGAG 1130094 37 100.0 35 ..................................... CGTGTAACCTTTCCTCTTTATCGAAGTACTTCTCC 1130022 37 100.0 34 ..................................... TCCTTGGCAGTCGTCATGCGTCCGCCTCTGAATG 1129951 37 100.0 35 ..................................... CATATTTATCTCCGTCAATAACGTTATAACCCATA 1129879 37 100.0 38 ..................................... ATTGAAGATACCAAAGCTTTTCCTTGTTTCTTTTTCAT 1129804 37 100.0 35 ..................................... CAAAGGAGCCGTTGACAGCAATATGAAAGACTTTT 1129732 37 100.0 38 ..................................... ATCCTCATCACTCTCTACATTAGCGTTGAAAGTGAAGA 1129657 37 100.0 35 ..................................... CGTCTTTGCAGATGTAACCTGTAACTGAAAAATTG 1129585 37 100.0 36 ..................................... CTTCTATTGTTACTTCTTTGCCTTTCTTCAACAACT 1129512 37 100.0 38 ..................................... CTACATTAGCGTTGAATGTAAAGATTAGGCGTGCACGT 1129437 37 100.0 35 ..................................... TCGTCTTCTCCACTTCTTTGTGGAGAAACTCTTTT 1129365 37 100.0 34 ..................................... TTCCATAAATTGAATTTACGGCAAAATTAACGCT 1129294 37 100.0 35 ..................................... TCAGCACTGTTTTGGTTTTTACTTGAGGACTTTGC 1129222 37 100.0 35 ..................................... GATTGAACTATAAGATTTATCTATTAGACGCATGA 1129150 37 100.0 32 ..................................... AAACCAATCATAGACTTTGCAGACCTTGCCGT 1129081 37 100.0 35 ..................................... CTTTATCGCTGCAATTTTCAAAAATCGCATTTTGA 1129009 37 100.0 36 ..................................... TTAGAGTGAGTTCGTAAATTGAATCCTTGTGTTCAA 1128936 37 100.0 36 ..................................... AATTTGGTACTTATTGTTTTAATAAGGTTATAAACA 1128863 37 100.0 35 ..................................... GCAAGAGAAAAATTCAATAGTGATATTAAGCCTTT 1128791 37 100.0 34 ..................................... TTGTCGAAATTTCCGTAAATTGAATTTACTGAAA 1128720 37 100.0 33 ..................................... ACCTTATTAGGTTTTTTGGATCTTCGACCCGAA 1128650 37 100.0 36 ..................................... CCACTCCCATGAGGCCTACCCCTCGCACGTATAAGT 1128577 37 100.0 36 ..................................... CGATAGGTCAGCTTTAGTTTTATAATTAATTTCGGG 1128504 37 100.0 36 ..................................... GAAATAAAAGTATCTACTTTTTCACTTTTAGCATAT 1128431 37 100.0 37 ..................................... TTAGGACCGTCTTGTTTTTTATCCCTGACACAAGGCG 1128357 37 100.0 34 ..................................... ATCTTCGACCCGAACTTTTTTTATTCTTCCGGTG 1128286 37 100.0 36 ..................................... TTATTAGGTTTTTGGATCTTCGACCCGAACTTTTTT 1128213 37 100.0 34 ..................................... TATGTATTTATATACTCAAACTTAATATTTAAGT 1128142 37 100.0 34 ..................................... ATGATTTATAATTAATTTCGGGCATCCTGATTCT 1128071 37 100.0 33 ..................................... GGCATAAGAGGGTTTAAGAAAGCGTGCTTGCAT 1128001 37 100.0 34 ..................................... TGGATCTTCGACCCGAACTTTTTTTTATTCCGGT 1127930 37 100.0 36 ..................................... TCCTTGGTGTAGCTCTCTGGCTTGAAAAAGCCCTCG 1127857 37 100.0 35 ..................................... CTACTATAAACTATCCATAGTCGCCAATATGCAAC 1127785 37 100.0 33 ..................................... GTTACATTGTTTTCCTCATTGAAGTCTGCTAGT 1127715 37 100.0 37 ..................................... CCATCGTCATTTAGCTCTGAAATATCCCAATTGAATA 1127641 37 100.0 36 ..................................... TAGGCTCCGCATACGCCACCATGTTTCCAGGCAATG 1127568 37 100.0 35 ..................................... ATCCTGATTCTCAACCTTAATAGGTTTTTGGATCT 1127496 37 100.0 37 ..................................... ACATTGAAGCTTGCGAGTGCTTCTGGTATCTCTATTG 1127422 37 100.0 34 ..................................... AAAGTAGAATTTAACTATTCGCTTGCTAAGAGCT 1127351 37 100.0 34 ..................................... AATCTGTGTAATTCTCTTCACGCATAAATTTTCG 1127280 37 100.0 38 ..................................... CTGCTTTAATATATGGTATCTCGTCTAAAAATGTTTCT 1127205 37 100.0 32 ..................................... CTTTCCAAGTATTTATTTCAACTTTTTTCTTA 1127136 37 100.0 36 ..................................... TCCTTCAAATGCTGTTTTTGCTGCTTTTAAGCACTC 1127063 37 100.0 35 ..................................... TTCAGAAGAATCCCATATAAGTAATTCGTAAAGGA 1126991 37 100.0 34 ..................................... TGATGTATTTTGCAGAATGTCTGAAATGTCGTTA 1126920 37 100.0 33 ..................................... AATTTAGGGGTGCTTTTCACAATCATTGCAGCA 1126850 37 100.0 36 ..................................... TCGAAAAAATTTCTTACCTCATAACCTTCAATTTCA 1126777 37 100.0 39 ..................................... CGAAATTTTTCATCTTTCTGTCCTCCAATTTTAGTTAGT 1126701 37 100.0 33 ..................................... ATCCCATATTTATTAGGACACAACATAGGTGCC 1126631 37 97.3 33 ....................................T AATGATATATCTTTATTTGACGTTCTTTGAGCT 1126561 37 100.0 35 ..................................... ACTGATTTTGAACAATGCGAATGTCTTCTGGTTCA 1126489 37 100.0 33 ..................................... ATCTTCAAAGTTTGAGAATATTAGTTCTTCTAA 1126419 37 100.0 34 ..................................... TATTCTTAAGTTCGATAATGTTCATAATTGTATG 1126348 37 100.0 45 ..................................... TTTAACGCTTCTGATAGTGTATAACCATTCTTGCGAACGAATTGC 1126266 37 100.0 35 ..................................... ACTCCCAACGGCTTTCAAAGCTGTTGCGTAACTCT 1126194 37 100.0 35 ..................................... CTTCCTTGATGTATGAAATAAGGTGTCCTACCTCA 1126122 37 100.0 37 ..................................... GATGATGACACTTTGTGTACTTAATAGCTAAAACTAT 1126048 37 100.0 36 ..................................... AGAATAGAAGAGACGTTACCGTCTCGTTACCTCTGC 1125975 37 100.0 37 ..................................... ACTTCGCATACGTACTGACATATAATGCGATGACAGG 1125901 37 100.0 39 ..................................... TACTTCATGTTAAGTTTTTCCATATCTTTGTTTTTTATG 1125825 37 100.0 35 ..................................... GTTAATATCTGTATTTCGTTATATTTGTTAGATGC 1125753 37 97.3 0 ..................................C.. | ========== ====== ====== ====== ===================================== ============================================= ================== 68 37 99.9 35 CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Left flank : GCTTTTCTTCGTCATGTATGATATTGAAAGCGACAAGGTGCGCTATCATATTGCAAAATATCTGGAACGCAAAGGATGCACCCGCATCCAACGTTCTATCTTTCTTGCCGACCTCGATAAGAAAGTCTACGACCTCATCAAAAGTGACCTTGAAGAAGTACAGTCGCTCTATGACAATCATGACAGTATTATCGTATGCCCCGTCTCCACCGATCAATTAAAAGCAATGAAGATTATCGGTGAAGATATAAGTATTGACATTATCACTCATTCGCGTAACACATTATTCTTTTAAAGGGATAAGAATATTACATTCTTGCTTCAATGGAAACAAGCACCTTCTATTAAAGAATAATTAACGCTTCGCTCTTTGACTTTCTGAAATATTATTTGTAATTTTGCACCCGCAAATAAAACAGTTAATTTCTGTTAATAAGGTCATCTCTACAAGGGTAGACATACGTCAAACGACGATAAACAAAGGGACACAAGTCTTTGCA # Right flank : CTTTCAGCATAAGGATTTTGCAGACAAGTGGTTTAATGCAGGGGGCGTAGAAAGGTAGCACAACAGAGAGAGATACAGCCTGCAAAGCTTTGGTAACGGCTTTGTCTTTTGTAATTACATATTTCTTTATCAGAAGTTACTATCCCTTCCTTTCCAACAAGCAAATAACAAAATAAGTAATATAAATGTTTTTGACTTATAGAAGTTTTTTCGTAACTTTGCTCTCAGAAACAAATTAAAATAAAGATTAGAACGTTATGCTTACATTAAAGCTCATCAGTGAAGAGACTGAACGCGTCATCAAAGGACTGGAGAAGAAACACTTCAAAGGTGCACGCGAGGCAGTTGAGAAAGTATTGGAATATGACCGTTTGCGTCGTGAGACTCAGCAGAAGCTTGACACAAACAAGCAGCAGCAGAATCAGCTCTCGAAGCAGATTGGTGGACTGATGAAAGAAGGAAAGAAAGACGAAGCTAATAAAATAAAGGAAGAGGTGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAGAGTATCTTCCATTAAAACAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //