Array 1 639303-638549 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALJM010000001.1 Paenibacillus thiaminolyticus strain Mbale tig00000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 639302 32 100.0 34 ................................ TGAAACTAGAATGTCGTAAATTCTTTTACCATGC 639236 32 100.0 34 ................................ CAATGGAGTCGTTTCCGGATTCAGTGCCCTTTGA 639170 32 100.0 32 ................................ CCCGACCAAGCGAATAGCAAACCCCGGGATAT 639106 32 100.0 33 ................................ GTCCCGCAGGCTACGCATCTGTGTTTCCGACGC 639041 32 100.0 36 ................................ CTGGTGACGTCGGCCAAGATACGGACATTCGACAAC 638973 32 100.0 35 ................................ CACTCATTCATTGCCTCACTAATTGTCGTGAAGCT 638906 32 100.0 33 ................................ GAACTCGTTGCCGACGTATGTGTACGGCACGGC 638841 32 100.0 34 ................................ TTTTTAGTATTGATCATTGCATACATTGCACCAC 638775 32 100.0 33 ................................ AACTTGAACAACGAACTACGGGGGTAGAGCAAG 638710 32 96.9 35 ...........A.................... AGTACAATGTCATATATGGCGACCTGAAGCAAACG 638643 31 93.8 32 ...............-...........A.... CAAGCGACAGTCGAATAATGCATATAACTGGA 638580 32 87.5 0 ..........G.........C...G.....T. | ========== ====== ====== ====== ================================ ==================================== ================== 12 32 98.2 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GAAGCGGTATGACGTATCGTGGCGTTGGTGTACCGTATGGTGTTCATCGGTTTCCGTCCCCATACATGCCTCTCCTTCCTACCATCTTTTCCTTTATTATACCTGATTATAAGTGGTGGGGAATAGGGTGGGAATCTAGTCGAGTCTAGTGTTATAACGATTCCACGGGAGTTTCTCACTTGTCGGAATTCATTTTTCGCTAACGGGAATTCTACATGAGTTAGTCTGACATTAACCATCATTTAGATACCCCTGTGGTATACTGAAAAAAAGGAGTTTAGAGCCTATTTGAAATGGAGTAAAAAATAAATGAATAATCGGTGCGAATGTGAAGTGCACATGAAATCCCTGGGGGATTCGCACCAAAATTATTGCAATGTTATCCCATTTAGTTTGTGAAAGTTAATTAGTTTAAAGCTATTTCGAGCTAAATCTCTCATTTGCCTCGAAAATTTAGCGAAAAATTGATTGTATTGTTATATTTTATGTAATTTTTCGCT # Right flank : TCCCAAAACCGGCCTTCGGCCTTGCGGAAAAGTTAAAAACGTTTCCGATGCGCCACAAAAGCAAATTTTCTATGACAAACCCGATTGTGATGAGGCTGTCCCATAGGCAGTGCGCAAGGATGCGGGGCAAGACGGGATTACAGATAATAGAGTGGCAGGAAGACGGCGGACGGAAAAGCGGCCGAATAGGGACGGGTTTAGACGAGGTTGTGAGACGGAGCTGGTGAAATGAAAGCCTGCATGAATCAGTCTGTTGAGAAAGTCCAAAGGGTTTTTGGGCACTTCATTAGCACTTGTTCTCAGTAGAAAAATCGTGATTTCAAACGCTCTGATCGAAGTGCCCGAAAACTGCACAATGAAATGTCTATCCGATAGGCGAACTCTTCAAAACTGCACGGTTTCTTAAAACACGTTGATCCGGTAGGCAAAAAATCCTGCAAAAATACAGCAACTCGATAGGGACGACTTCACCAGAAAGGGAATCCTGTAAAACGGCAGCA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 642922-642560 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALJM010000001.1 Paenibacillus thiaminolyticus strain Mbale tig00000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 642921 32 100.0 34 ................................ CTTCGAAGAAGCTTTAAGAAGGATACAATATTTA 642855 32 100.0 34 ................................ CGTCATCTGCCTGCTGCTCGGCGATGCGAAACGC 642789 32 96.9 34 ...................T............ ACGTCAGAAAGCCAATGAGTTGGTTTGATGACGG 642723 32 96.9 36 ...................T............ ACCACCAACATACTACCACCAACAAGCCCGCCACGG 642655 32 100.0 32 ................................ TCATCATAAAAGCATTTGCCGTCATAGCTCAG 642591 32 93.8 0 ....................A...T....... | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 97.9 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GCCGAATCTGTATGAGTTGTTCCGGCTGCATGCGCTGGCGCGCGGACAGCTTGTCGAGCGGGAAGAGGAGGCGCAGACCGTATTTTCGGTCCAGCGCGGAATCACTCCGTTCGATATGGAGGAGATTATGGGAGCGTTCCTGGCTTCGTAGGGTACGGCCTCTCATTCTGAAAGTCCAGCTTCCTGATTTGGATGTTGTGTGGCCACATATTTTTATAATAGTTGCTTGTGATATACTGAAAAAGAGATAAACTCGTGGCATGAGCAAACGAGGGAGTCTCAATATATTAACTAATAGAAAAAGAATGCTGAAAAAACAGGTGCGAATGTGAAGCTCACATGAAATCCCAGGGGGATTCGCACCAATTTTATTTAAATATTATCCAATTAAGATAATGGAAACTGATTGGTTGAAGCTTATTCCAATCTAATTTGCTCGCTTCCTATGAATTTTCAGTGAAAAACTGATTGAATTGTTATATCTTGTGTTGTTTTTCGCT # Right flank : CGCCAACGTCCCAGACTCATCGGGACCACAAAAAAGAGCAGGAAGCCTTTCGCTTCACTGCTCTTTTTTCTGTCCTAGAATTCGATTTTAAGGCTGACTCCGTTGACATATACGCCTTCAGAACGGGTAATCGGCAGCTTTTGTTCAGCCGTGAACCCGATCGTTTCGCCATCTCGTAAAGTGATGTCCTGTTCTACGACATAAGCGGAAATATCAATCAGGAAGTTGCGCAGCTCGGCAGGGGTTGCCTGACTGTCCAGCACTTCGATTTCGTCCTTGCCGAAATGCTCCAGCCCGATTGTATATCCGCTCACCCCTGTTTCCGTTCCGACAAGGCCAAAATAAACCAGATTTAGTAAAGGGAATTCGTCATCCGCCTTCATCATCTCGGCCAGCTCCACAAAGAATTCAGGCTGGTAGACGGTGCCGGATGAATAAAGCCCGATTGCATTCGGGAGCTTTAAGCAGCTGGCGGCTAGCTTAGTATACATTCTTCCGCT # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : GTCGCATCCTACGCGGATGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 936986-936553 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALJM010000001.1 Paenibacillus thiaminolyticus strain Mbale tig00000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 936985 32 100.0 36 ................................ TTTTCCAAAAGCTCGATGTAAGAGGCTTGCTGTCCG 936917 32 100.0 34 ................................ ACGAAGAGCTGGACAGTATATGGACTCAAGGAGT 936851 32 100.0 34 ................................ GGAACTGGGCGGCAGCAAATGCGTTCATTAGCAA 936785 32 100.0 34 ................................ GCAAGTTGAACATCAAGGGCGGAGTAGATGTACC 936719 32 100.0 36 ................................ ATGAAATGTGCCATGTACTGCGACATGTCGGCGATC 936651 32 100.0 34 ................................ GATACTCCTTATGCACGGAGGCACTACTGGCATC 936585 32 87.5 0 ............A............C..G..C | G [936555] ========== ====== ====== ====== ================================ ==================================== ================== 7 32 98.2 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : AGCCAGTCATCTGGTTAACCTGCTGACTCGAATGGCAGCCCCCATGAGACGATAACCCGTCAGAGCCAGCGGCAATGATATATTGCCCGTATATAGCCCCGTGTCGCTAGGCCCCGGGCCCACAAACCGGGGCTTACCCCCGCGTCAGCGACACGTTTCAGGGGGAAGAACGCCCTGCGAACGCAACGGCGGATACCCTATCATGGTCGCCCATGATATACTAAATAAATGAGAACAAGTTCAATCATTCAACAGAACGAGTGGAAGATTCAGCCCTTTGCCTCGGCGAGGAAAGCGTAATTGTGCCATTCGATGATTGGGCACAACTACTGGTACGAATGTGAAGTGCACATGAAATCCCCGGGACATTCGCACCATAATTATCCAACTTAATTGGAAAGAGCTATGGGGGAATTGCAAGTTTTGGTTGTTCTATTCATTTTCTAGAGTTATTCAATCATATTTGAGTGGATTTTTGACACATTCAGTCAATTCTCGCT # Right flank : AAAAAAGGGCCGTTTCGCAATGAAACGGCCCGTACTATGAATCAATGGGATTGTTCCTTTAACTGCGTGATAATATCCAATGAAAAGCCCGTGACTCTGGCGATCAATTCTGGATCCAAGTCTTCGGCGAGCATTTGCTTGACAACTTCTTTTTTTGCTTCATGCTTGCCTTCTCTTCTACCTTCACGCTTAATGGCATCCAAGGTTTTTTCAAGCCCCATAACCGATACGCCTCCTTTTACGTTTTGGATAAGCTCGCGCAACTGTGGTTCATTTTCCGGCAATTTCTGACTTAATATATTCGCCATCCAGGCGATTAATTGCTGCTGGCTGTCCTCTGGCAATTGCTGTATCGTATGCATCAGCTTGCCGAGCCGATTCAGTAATTCCGTCTGATCCGCCGTCTGATCAAGCAAAAAGACAGAACCGATCGTATTGGAAAGAGCCAACAACTCTTCTTCTGTATATCGAGCAACATCAATAAGGACATATTCAAAATT # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1464121-1462900 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALJM010000001.1 Paenibacillus thiaminolyticus strain Mbale tig00000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1464120 32 100.0 35 ................................ TGCTACAATGGTTGCATTTTTTAGTCTTTCATCGT 1464053 32 100.0 34 ................................ TCCTTTAGGGTCGGTAAGCAACATGGATTCTCCG 1463987 32 100.0 34 ................................ ATTTTGTCAATCCTGCTGTACATCTGTTCGTATA 1463921 32 100.0 33 ................................ CTCGATCGCATCATCTTCCCTATTGACTAAGGA 1463856 32 100.0 33 ................................ AAGGTTGACGTACAATACCTTGCCTTGTGTACA 1463791 32 100.0 34 ................................ TTTAACGTCTGCAATACCAAAAAGACGGCATAAT 1463725 32 100.0 34 ................................ CGCATTCCGCGTTTACTCTCGCCTTTGAACGGTA 1463659 32 100.0 35 ................................ AATATAGCGGCTGGGAGGAAATGCTGACTCACCGG 1463592 32 100.0 35 ................................ TCTCTTGTTCCAGCGACTTCCTGATATGCTGCAAT 1463525 32 100.0 35 ................................ ACTTCAATCGCAAATTGACTCTCTGCGTTATTCTC 1463458 32 100.0 33 ................................ TCGACATAGGCGCTTCACATGGTCTTGTGACAG 1463393 32 100.0 33 ................................ TGCCGGTGCTACTCCATCAGCGAAGCGATAGCC 1463328 32 96.9 34 ...........C.................... GTCTCAAATTTGGCGAAATGCCCTGCATATTTGC 1463262 32 96.9 35 ...........C.................... GGTCGCGGGGCCCCATATCCCCACCTCCCGCACCT 1463195 32 96.9 35 ...........C.................... GAAAGTTAGCGCCATGTGCACATCCCTCCTATATA 1463128 32 96.9 34 ...........C.................... GTCATGCACTATCTGCGAAAGATTGCTTGCAATC 1463062 32 90.6 34 ...........CA.......C........... GCGCCGGATGGCACATGGCTCTGTACGATCGTCA 1462996 32 93.8 33 ...........CA................... CACAGGCGCGTAATCGTTTCGGCCGCGCCGCCC 1462931 32 87.5 0 ...........C....G..T..........G. | ========== ====== ====== ====== ================================ =================================== ================== 19 32 97.9 34 GTCGCATCCTATGCGGATGCGTGGATTGAAAT # Left flank : CCAGGGAAAGGGTGCGGATTGGATTGGTTCATTCACGGGTGCGGATGATTCCGATTCAGGCTTTATGGGGAGACTGTTGGTGCTTATCGAGTTAGTGTGGGTACGGAGGAAGTGCCCTGCCGCTGTTCGCTGGTGGGGATACACCTGCTCACTCCTTATAAGCATTCTCCCTTCGGCTCAGAAAAGCAATCTTTTGCTTAAAACCGGTTTAGAAGTTAGTGCAACACATGTAAGCATGATATACTCAAAATCAGGGCAAAAAGAAAATAACAAAATGGGTTTATTTTCATTGTCGTATAAAAATTCCATTCTGTTACAAGTGCGAATGTGGAGTGCACATAAAATTCCCGGGGGATTCGCACCAACTTTATGTAATTATTATCCAATTTAGTTGATGGAAGATCAATGGTTTGAAGATTATTTCGAGCTTAATCGCTCACTTGGTGTGAAATTTATGTAAGAAAATGTTTATATTATTGTTTATTGTGTTATTTTTCGCT # Right flank : GGTAAATAATCTAGCTTGCATCGTCGAATTTGTCGCCTACGAGATATCGTATATTGAAACCGAGTGTATGCGCCTTCTCAATTGCAAAGGACACACCTTGATGCGGTTGCGTAAACTGCTGTGGAGATGTCAGGCGGGATAGTAGTGCCCTCTCGAAAGGGGAAACCTCACTTTCAAAGCCTTCTCAGGCGGTTTGCATAAATTCAATATTATGGTAATGTTATTTATTGGAAGGGGGGATATGGAAGCATCGTCGCTACAATATTCCACTATTGGCGACAGCATAAGACAATACAGAAATAAGGCAAATCTCACGCAAAGCCAGCTTGCCGAGTTGTCAGGCGTCAGCACAGGCTATATCTCTAAAATTGAAAATGATGAGGTAGGACGCCCTTCATTTGAAAAAGTTTGTCACATAGCTAAGGCATTACAAATCCCTATTCATGAAATCGTCCAACCGTATCTTGAAATAAGGAAAAAATCCAATGTTTTGTTCGGAA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTATGCGGATGCGTGGATTGAAAT # Alternate repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1347805-1348371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALJM010000006.1 Paenibacillus thiaminolyticus strain Mbale tig00000093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1347805 30 100.0 37 .............................. AAGCTCCGAATTGTCGTCGTACCGATGTTCGTTAGGA 1347872 30 100.0 36 .............................. TTCATTTGCTTCACTCTCCCCTCAAATAACCAAGCT 1347938 30 100.0 37 .............................. TACCCTTCTGTTGGGGTTCCTTCAATCGGCAGGAACC 1348005 30 100.0 37 .............................. AGAGTCTAAACATGTTTTCTGCAGCTGAGGCGGTTTT 1348072 30 90.0 36 ......G.A.......C............. CGGTGCTTACCACTCGTGCAGCGCAAGGAAATACTT 1348138 30 86.7 36 ..A...G.A...T................. GGTAGGTGTGCGGCCGGGTGCGGACACGACCGTTCC 1348204 30 90.0 38 ......G.A........T............ ATCCGCGTGTCATAGATGGCGTGTGGGCGCGGCAGGAC 1348272 30 90.0 39 ......G.A..............G...... TTGATTTTCTCTTGGCCGTCCACATAGAACTCGCCGAGC 1348341 30 80.0 0 ......T.C........A..C......C.G | T [1348364] ========== ====== ====== ====== ============================== ======================================= ================== 9 30 93.0 37 GTTTTGAATGTACCTATGAGGAATTGAAAT # Left flank : TCACTTTGGGCGTTTTACTTGACGGTAACGGATACATAGACCTTCTGGCCGTTGGAGATCTGAGAGCTTATCTGACGGGGAAATAATTGAAAGCCTTGGTATTATGCTAGGGTTTTTTAGACGTTTACTGTTATCGAAAGCTCCATAGAATACGGCGAAATAGCCTGATAGGATTAAGTTTTCAATTCAATGTCGCATGCTGAAAGAGATGGTAACTTGAGAAGTATAGCTGCCGTTGTTCTTAATTCGTTTTAGTATTAATGATAATAGCTTGAGTATGTTTCGTGGTAAATAACATTTTCTCTTTATTTTGTCGTCGATCCCTAATAGCGTAAAAACCCCGGGGGATCGACGACAACTTGAAAAATGAAGAAATGAGAAGCGAAATGTAGATTTTTCGGAGATATCATTATGAATTGTGTTGTTTATCAATTGGAGTTATTGGATTGTAGGAGCAATATCTATCTGGTAGAATTGGCGTAGGGACGGCACTTTTTGGG # Right flank : GGCAATGTAGGCTAATAATTCTTGAGCTGGTACAGGTTATTTAACCTCGTACCGCTTTTTTATTTTAACAATGCCGAGTCCTCAGAATCGGTTTCAAATATTGACAAAATCTAACGAAGAATGTGGGGAAGTTGGAAAATATGAAGGCTGGTAGTATAATGGAACTACTTCGCCCTGCAAATATTAGGATTATAGTACCGAAAGGATAGTTTCATTGTTCAAGCCACGCTGATCAAGACAAAGAGTCTGAACATGTTCTATCATTGAATTCCAACATCGAGTCAAAAAGGAATGGTGATACTTCGTATATAAGAGGCCATTCTTTTTTTACATATAAATCTTTCTTTGGGGGGAGTTAAAACGGTGGCGTCAAAAGAGAAAAATGTTCTTTACAAGATTCATGAAAATTATAACTATTTAAATAAAATGATGGTTGAAGAAATGGATATTGCTACTGAGCATGGCGGCTTGACCGGGAACCACCGCGAGGAAATGTGGAT # Questionable array : NO Score: 8.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAATGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 2 1357944-1358646 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALJM010000006.1 Paenibacillus thiaminolyticus strain Mbale tig00000093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1357944 30 100.0 39 .............................. CCTGCTCCACTCCGATTAATAGCGTGAATACCCATGCGG 1358013 30 100.0 40 .............................. CCTGTTCGCGTCCAATCGATGGCCGCGACTGCCAATCACT 1358083 30 100.0 38 .............................. CAACACGCAACCTATTCACGACGACTTGCAAGTGATCC 1358151 30 100.0 38 .............................. CTGACAATAATCCTGATACATCTGTCGGCATGGGCTTA 1358219 30 100.0 35 .............................. TCCTGCCGAGATTGATATCCGAGATTACTTTCGCC 1358284 30 100.0 37 .............................. CTCATCCCCTGTACCTCCATGCCCCTGAGGTTGCCAA 1358351 30 100.0 36 .............................. TACTGTTTGGCCGTGAATCCTGTGCGAGTGATTACC 1358417 30 100.0 38 .............................. CAGCTCCGTCCAATTTTTACCGTTGGATGTTATTTCAA 1358485 30 100.0 39 .............................. ACAAAAAAGCAAGGCTCTTCTAGGCCCTGCTTGATTTCC 1358554 30 93.3 33 .................T.........T.. TTGCATACAGTGATCACTATGCAGATTAGTGTT 1358617 30 83.3 0 .............A..A......A.T.G.. | ========== ====== ====== ====== ============================== ======================================== ================== 11 30 97.9 37 GTTTTGAAAGTACCTATGAGGAATTGAAAT # Left flank : GACTCACTGATAATGAACCCAACAAAGACTTCAGTGAATCGGGTTGCATATATTGAGAAGTTTATTGATGCGATGAATGAACCGGAAGAGTCAGGTGGTACCTCTTATTTTGAAAGGGTCCACTTTGAAAGATACGTGCAGAGCAAATCAGAAAAGAATTTGGTTAGCGGAAAAGGAACGGAGCAAAACCCGAAACACGTCACTTGGGAAAGTGTTATTGAAGAGATAGCCAAGGAAAGTAACACCGGAAAAGGTGGAGGATATCCGAAAACGTGGAGGCTAAAATCGCCAAACCGGTAACCTGCCATAACTTGTCGTCGACCCCCAATAGCGCCAAAACCTCGGGGGATCGACGACAAAATGAAAGATTAAGAAATAAGCAGAGAAACATAGATTTCTGGAGCTAACATAGCAAAGTATGATATTTATTACTTGACGCCATCAGCTAGTCTGAGGACTATCTGTTTGATAGAATTGGCGTAGGAACGGGACTTTTTGGG # Right flank : TGCTTGCAATATATTTTGACCGATATGAAAAGTTAATGGAGTAATTAGACAAAACCTAGAGTGGGTACAAAAGGATGACCTCTACCCCGTATTTTAAAATTCCGCATCAAGGGCAATTGGGAGCTTTGATTGGTGTTCAGGATAAAAGAAAAGTAGATTATAAAAATGCTTTATTCGGATTCATTCCAGACGGAAAAATCAAGAAAGTGAAAGCGACTATCCGTTTGCTTATAAGTCCCGAATTCGTTTCAGCCCGCTTGATATTCAAGGTAAAGTTCAATTTCGCAAGGTCGAGAATTTATTGCTTATGACTCTTTCCGCAACAGCAAGGGGAATGTTCTTCGGCAGCCGTCAGAGGAGAAACTTACTTAGAAGATGATAATATTTAAACGGCTATAAATATTATCATGTGTTGCCTGAACCGATAGTGCCAAGGATTAATGATGAAAAGCTAAAAAATATGGTAAGTGCTAGGGAAGCCATCTCTTGTGATGGGATCA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAAAGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 3 1359867-1361106 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALJM010000006.1 Paenibacillus thiaminolyticus strain Mbale tig00000093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1359867 30 100.0 38 .............................. TTTTTCGGACGGAACGTTCCGTCTGGATACCCCACAAT 1359935 30 100.0 37 .............................. AAAACCCAAAAAGGAGATATCACATGGAACAAAAAAT 1360002 30 100.0 38 .............................. ACGGGAAAAAGACTCGTAAACAGAAGGAGACAAAGTCC 1360070 30 100.0 35 .............................. CGTTTATCTCAACGGCTCTCGCGTTGGCGGTCTTG 1360135 30 100.0 37 .............................. CCAATCGTTCGACGCGGTAATCGTATTTCGGTTCCGG 1360202 30 100.0 35 .............................. ATCCTTCGCTTCTGTTGTTTCGATAATTTCCTTGC 1360267 30 100.0 36 .............................. CGGATCGTATATTGCGACAAGTAGAGGCAGCTTTCC 1360333 30 100.0 36 .............................. CTAAGTAACTTGTTGCATTTTGATACAGTTTTCCGA 1360399 30 100.0 37 .............................. TCAGATACAACTTCGATACAGGTTTAGTGCATGTACT 1360466 30 96.7 37 ...........................G.. GCTCGCCCTCCAACTCGTTCACACGCTCGGTAAGCTG 1360533 30 100.0 38 .............................. TTGTTTATGAAAGTGTATATTATATTTAGGAAGTTAAA 1360601 30 100.0 39 .............................. ATTTTATCTAAGTCAACATATCTATTCGCCCATGAGGAA 1360670 30 100.0 35 .............................. TACTTATCAAACGCTTGCCGCCGGGGTCGGTACCG 1360735 30 100.0 37 .............................. AGTAGATCTTTGATGATGGTCGAAGCCTTCGTGTTTT 1360802 30 100.0 39 .............................. CGGCGCCCATTGAATCAGCCACGCACTTGAAATTGCAAT 1360871 30 100.0 38 .............................. TCCCGAGGGCATAAATATAGCGCCATACCATAGGGCAG 1360939 30 100.0 39 .............................. TGTTAGGCCTTAACGGCCGGAAGCTCGAACGTAACAGGC 1361008 30 100.0 38 .............................. TACAAGTCTACAGTCGTCTCCTCGCCGCACGTACACTT 1361076 30 93.3 0 .........................T...A | T [1361103] ========== ====== ====== ====== ============================== ======================================= ================== 19 30 99.5 37 GTTTTGAAAGTACCTATGAGGAATTGAAAT # Left flank : TGGGACTCACTGATACTGAACCCAAGTGAATCGGGTTTCGCATATTGAGAAGCTTATTGATGCGATGAATGAACCGGAAGAGTCAGGTGATCCCTCTTAATTTTGAAAGGGTCCACTTTGAAAGATACGTGCAGAGCAAATTAGAAAATAATTTGGTTTGCAGGAGAGGTGACGGAACGGAGCAACCCGAAACATGTTACTTGAAAAAGTGTTATTAAAGAGAAGATAGCCAAGGAAAGAACCACTGGAAAAGGCGGAGGATTCCCGAAAAGGTGGCGGCTAAAATCGCCAATCCGCTGACCTGCCGTAACTTGTCGTCGACCCCCAATAGCGCAAAAACCCCGGGGGATCGACGACAAAATGAAAAATAAAGAAATCAGCAGAGAAACATAGATTTCTGGAGCTGACATAGCAAATTATGATATTTATTAGTTGACGTCATCAGCTTGTCTGAGGACTATCTGTTTGATAGAGCGGGCGTAGGAACGGCACTTTTTGGG # Right flank : ACTCCGTTGACAAATCCCTATGAGTGGCAGCTACGCCTAGCTTACTCATAGGGCATTTTTGTTTTTATGGATTCCTTTAGTCATAAAATTTGACAAAAATACAACAACTTCGAGAAATAAATTGGAAAATAAACGAAGAGGTAGTATGATCGAACTAGTTAAATCAGGAGGGACTAGTCTTTGAGAATCAAGATTACATTGACCTTTGATGGCAAGCTTGTTGTACCTATCAATCATCAGGAATGGCTTCACGGGCTTATTTATCACAGTATCCGCGACGACGGATACCGGGATTTTCTTCACAATACGGGTTACCAGCAGGGCAAACGCCAATTTCGCATGTTCACCTTCTCTAGGCTAAATGGTTCATATCGATTAGACAAGGACTCCCACACCTTAGAATTTTCACCACCGCATGTTTCTTTCCTTTTCTCGGCATACGATAAAAAATTAGTTCAAGAATTGGTGTCTTCTTTGCTGATAAGAGATGATCTTCGTAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGAAAGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 1370549-1371856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALJM010000006.1 Paenibacillus thiaminolyticus strain Mbale tig00000093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1370549 30 100.0 37 .............................. AATCTAATCTTGAGTAAAGCTGCCACCATCTCCTCCA 1370616 30 100.0 36 .............................. TCAACGTATGCAGCTAGAAAAGGTGGCAAACTTACA 1370682 30 100.0 37 .............................. TTCGGTACTCTATTTGGTACATGGCTTCTTAGGAAGG 1370749 30 100.0 39 .............................. TCGGAAGAATCTCCAGAGGAGTATTCGAGCCGCAGCCAT 1370818 30 100.0 39 .............................. CATTTCCCATCCGTTTTGTATACCGTCTCGTTGTTCGGG 1370887 30 100.0 36 .............................. CTTCTTGCGTCAACGCCAGCTTGCTTTGCAGCAAGT 1370953 30 100.0 37 .............................. TTCCTCCGATAGCTATTGGCTAGGCCAAGGGGGGAGT 1371020 30 100.0 36 .............................. AGTGAGGTGCTATGAATGGCTACAAAGGACAAAATG 1371086 30 100.0 38 .............................. GTGGCCGGGCCCCGATACCTAATTTCAACCGGTGCCGC 1371154 30 100.0 36 .............................. GACTGAGTGAATGAGAGGTGTGGCTACGCATCTCCG 1371220 30 100.0 38 .............................. CCAACGTAAAGCTGCTTTTGTGAAGTTCATTGGTACGA 1371288 30 100.0 39 .............................. GCGCTTGATGAGGAAAATAACCAATACAAAGTCACTTGG 1371357 30 100.0 39 .............................. TGAACCGCCTGCCCAATCTGAGACGTTTCGACGTTCTTG 1371426 30 100.0 39 .............................. AACTCCATATTTCCCGCGATTGTCGTATCGTTTGTGCAG 1371495 30 93.3 36 .......TT..................... AACAAATCGGCGGCGGACACGGAGACTTCCAGCGCT 1371561 30 100.0 38 .............................. AGTTCCACTGATCAATGCTCTGATTTTTGAAAACGCCC 1371629 30 100.0 35 .............................. CGGCCCGATAGATTCTCCCCGGAATGTCCGAAAAC 1371694 30 100.0 37 .............................. TATGTCCGGAGATGCCCTTTGACCTCCCATGATTTAG 1371761 30 100.0 36 .............................. TCGGACAGCCGTGCTATTGGTTACATCGAGGAATTT 1371827 30 83.3 0 .................A....A...G.TC | ========== ====== ====== ====== ============================== ======================================= ================== 20 30 98.8 37 GTTTGTAACGTACCTATGAGGATTTGAAAT # Left flank : ATGTCATGAATGAAAAAAAGTACGAGCCGTTTGAAGCATTATGGTGAGCGTGAGGGGGAATGATCCGATTGTTTCGTTATTCTCGTATATGATTTTGGAGAGAAACGTGTTGCCAAGGCACTGAAGACGTGCCGAAAGTATTTGAATTGGGTACAAAACTCTGTGTTTGAAGGGGAAATTTCGGAAGTCAATTTAAAAAAACTAAAAGCCGAATTACAAAGAGTTATGGATGAGAAAGAAGACTCTATCATTATCTATACATGGCGAACGCAACGGTACACCCAACGCGAAATCATGGGTGTTGAAAAAAACGAGATCAGTTTCATTCTCTAAAATGCTGTCGTCGACCCCCAATAGCGCAAAAACCCCGGGGGATCGACGACAAATGATTTTTGCGCAAATCCTATGGTATCAGGGAAAAATATGATACATTAATTTTGTGGTAGATTGAACCATTTTCAGAAGCCTGAAAAAATACCTTTATTATATCCTTTTTACGG # Right flank : CAGTAACTAACTACTTTTTCGGCAACTACCACATTCAACTAATTTCACTTCATAATTGCATTAAAATACCTAACCAGCCTCAAAAGCACACACTCTTATCTTTCAGCGCCCCTCCCGGGGCGCTTTTCCTATCTAAACCACTAGTCTCCCTCTCATGCTCCTTTCTCCTCCATACCCCTCTTTTCCCGGTTCGCCTCCACATCCCCACAAATAAGTCCACCACTCCACCTAGCAACGCACGTCAACGAAAAACAAAAATATTGAATATTTTGGGGTTTGTTTATGTAAGTATGTACCATGTCAGCATACTATCCGGTCAGTATGTTTCGGGTGAAGGGGGATGGGCTAGTGAATTTTGATTATTCCGAGAAGGTGAAGTCGCTGCAGCGCACGCTGCTGGAGTTCATGGATGAAGTGGTGTGCCCGAACGAGAAGACGTATGAGGAGCAGCTCCAGCAGGGCGGCAGCAGGTGGAAGGTGCCGCCGGTTATGGAGGAGAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTAACGTACCTATGAGGATTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 1694684-1695930 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALJM010000006.1 Paenibacillus thiaminolyticus strain Mbale tig00000093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =========================================== ================== 1694684 32 100.0 34 ................................ TTTGACAAATGAAAAAAGCCACCGTTTCAGCGGC 1694750 32 100.0 34 ................................ TCTTGTATCCAGAATAACACGTTTTGTATCCAAG 1694816 32 100.0 34 ................................ ACTGCAAAGAACATGTCCTTTGTAGTCTTTAAAA 1694882 32 100.0 40 ................................ TTTACGATGAGTCAGGGGCTTTGCTGCAATCAATTGGTGC 1694954 32 100.0 35 ................................ AGGGAATACAAACGTGGCCAAGTATTTAACACACA 1695021 32 100.0 34 ................................ ATCGTATTTTAGGATATCTTCCAGCAGAGACATC 1695087 32 100.0 34 ................................ GTTGTCGTCGACTACTTGCAGGATGTTAAAGAAC 1695153 32 100.0 35 ................................ TGAAGAGCTACACTAAGGCCGTCAAGGATGCAAGG 1695220 32 100.0 35 ................................ AATCAAGAGAAGTATGCATTCGAAGATTACTGAAG 1695287 32 100.0 34 ................................ TGGAGACCGTACAATTCCTGATATCGAGCCACCG 1695353 32 100.0 33 ................................ GATTCAAGCGGTTAACCTGCTGGGTCAGACTAC 1695418 32 100.0 36 ................................ TCCTTTGATTGCAAAAAGACGCTGCGCCGCTCGCTC 1695486 32 100.0 43 ................................ GTCACTGTCAACCAATCGACGAATACGTGATGTCACGCCTTGG 1695561 32 100.0 36 ................................ TCAATTGCTGTTCTAGTGTTTTCAAGCCATATTGTC 1695629 32 100.0 36 ................................ TTTTGTGGTTGGCTGCTGGTTGTTTGCTGGTTGGCT 1695697 32 100.0 37 ................................ CGAACCTCATCCGCATGCTTAACGTAGGTCCGCGATT 1695766 32 96.9 33 ............A................... ATTCCATATCCATAACCCGCTCTTGTTGTTTTA 1695831 32 96.9 36 C............................... CCCCGCCTGGGATCGGTAACATGAAAGTAAACGATC 1695899 32 93.8 0 A.................C............. | ========== ====== ====== ====== ================================ =========================================== ================== 19 32 99.3 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : CCGCCGGATATTTAAATGAAGGCTTTGGCTAAGCATCGGGCAGACGCAAGTAATTTCCGACCAATTACAGGTAGAAGTCCACGTATTCTATATATTAATGATGTACTGACTGTTCTTAAGGTATGGGGAGTTTTTAACGGCAAGCACGCCTCCGATCTGCAGACGGCATGGATCGAATCTGTCAGGATTGCGTTTAGCTAAACTGTCCATAAGTACCGCAACACAGTTGCCCGTGATATACTAAGTTGTGGAATGGATAGGTGACGCCGCGAAAGAAGGGAGCATACCGAGACAGTAAGTCGTGCCGAGAAATCAGCATGCTCCATTTCGGTGCGAATGTGTAGTGCACATGAAATCCCCGGGAGATTCGCACCAATTTTATTGAAAAGATATCCAATTTTGTTAATGAAATTTAATTTGCTGAAGCTAATTTGATTCATTTTCTTCTAGTTGTTACCCAATAAATTTTTATTTTGGCATCTTTTGTGTTATTTTTCGCT # Right flank : TGACGATAGCTTTTCTAACCAACTGCAGCATTTCAGTCGCATCCCCCGCATGCGTGGGATGCGATTCGTCTGAGCTGAAGCTTAAAAGAGTCTCCCAAAATGTCACTTCTCTTGTGTATCCGTGATAGCCTAGAACCGACCAGTTGTTCAGAGGCTCAAATACCTTGCGAAAAGCGGCTATGGCTCCCTTCCCTTCCCTTCCCTTTCCTTGCTTAGGCACTCGCTCTTTAAGCAATGGTCCTCTCCTCTATTGGACCATTGAGGCTGTTAACGTATTCATACTGGATGGAAGATTCCAGATCATCATGTCGCTCTTCCTCATCATCATTTCCTGGAGATATTATCGCTTCGCCATTGGAATATGCACTCATCCCCAACTATCTATTAGGATAAGCTCAACTCCGTTTTCATCTACTTCTTTTCATCGTATCCGCTTCTACGTCATGCACCAACCTTGTCGAGTCTTTGAATCAGACTGGGAATAGGATGTCAAGACACGA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 2552570-2554263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALJM010000006.1 Paenibacillus thiaminolyticus strain Mbale tig00000093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 2552570 32 100.0 34 ................................ CCATTTCTCTCCCCATGACTTCTCGCCGCTCTTC 2552636 32 100.0 33 ................................ GAAAACCGATACCTGATAAGATACTATAAATCC 2552701 32 100.0 34 ................................ GCCGATCCCCAAACTGTTTTTTCTTACAGCCACT 2552767 32 100.0 36 ................................ TTTCCGGTTGCCCCATAGTATGATAGAATGGGTTTA 2552835 32 100.0 36 ................................ CAAGCTGTATCGGAAGATAGGTGTCGGGCAAGGTGC 2552903 32 100.0 34 ................................ CGTTGCTTCGGAGCACCCACAATGGCGGTGTAAT 2552969 32 100.0 38 ................................ TTATTCTGTACCTAGGTGTATACTAAGGAAAAAATAGA 2553039 32 100.0 36 ................................ CGGCCCCAAGATGGCGAAGAAGCCAAAATAATCGTC 2553107 32 100.0 35 ................................ GGATTAAGTGACCAGCTAATAAAGTGGCCGCCATA 2553174 32 100.0 36 ................................ CCCACTATCCGGCGGTTTGTACTCCGGCAGGGAATC 2553242 32 100.0 34 ................................ GAGCGAAAGAAAGCCAGCGGCACGGCCATAATAA 2553308 32 100.0 35 ................................ CAAAAAAGAAGCTAAATCTAGAACAAATAGTTCTG 2553375 32 100.0 23 ................................ TCATATCGGAGGTGTCTAAGATG Deletion [2553430] 2553430 32 96.9 34 ....T........................... TCTATCAAAGTCAGTTGCATCATCCAAAATATCG 2553496 32 100.0 36 ................................ CATATATTAGAGTCAATCAGCTTCAGTCTCAAATTG 2553564 32 100.0 34 ................................ TTGCCCAGACACAGGTTAGATCCGGACGACCGCA 2553630 32 100.0 35 ................................ CGCCAAAGCCCGCAAAGGCAATCGCGCCGGTTATC 2553697 32 100.0 36 ................................ CACTCTCCGTCATAATGCTTGTTGCCTTCCAGAATC 2553765 32 100.0 34 ................................ CTCGTACATGATCCCTGATCCGCCCATCTTCGCC 2553831 32 100.0 33 ................................ AGATCACGCACATCAGAATATGACTGTACGATT 2553896 32 100.0 35 ................................ ACACGAGGCCGTTATAGAGGCAATGAGCCGCATCA 2553963 32 100.0 34 ................................ CTTTTTGACTTCCTGGGCGGTATCTTTCGCGGTG 2554029 32 100.0 35 ................................ CTCGAAATGAGTTTAACGCATCCCAAATATGTGTA 2554096 32 100.0 36 ................................ CAACCAACGTCTACTACGCTCCATACGTCGAATTTG 2554164 32 100.0 36 ................................ GAGGATTGGCCGGACGGTATCACCGTCTGGACCTAA 2554232 32 93.8 0 ............A.......A........... | ========== ====== ====== ====== ================================ ====================================== ================== 26 32 99.6 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GGAAGCATAGTTGGATTGGGGGAGTTGCGGTGACCTCGTTCGAACGGGTGGAGCCTTGGGACAGGAGTCCTTTGCCGCTCCTGGCGGCATGGTTCGAGGATGAGGAAGCGAGTGCGGGAACGAATGGACGGGATATTTCGGTTGGAAATGGTTCGGTAACACGTTTAGCAATGACACCCTGTACGATGTGAATGGATGCGCGAAGTGATGGAGCGTTGCATTTACGGACTCAACAAGCACTATATTATGAAACTGCAAAATGTGGTAACTTATAGATATAGATTTAACGATAGAGAAGCCCCCATGTTCTAGTGCGAATGTATAGTGCACATGAATTTCCCGGGGGATTCGCACCATAAAATTTCTATATTTTAGGTAAAATCCATTTTATGGTTTATTCAAAAGGTGAGAAATGACCTTCTTTAGAATGATTCAATAGCTAATTTGATTTGTTTAATCATAACAAGACCGAAAAATGATTGGAACAATCATTTTTCGCT # Right flank : TCCGACGCTGTATGTCTCCAGGACGCGGAGGCGGGCCGTCGCATCTTGCACCGACGCGTAGAAAACATTATGAAACCAAAAAAGCATCTACCCCCGTATCAAAAGATGACGTGGGGGTGGGATGCTTTTCTTTTTTATAGAACGTACGTTCCCTGACAGATTGTTGTCACTTTCTTCAACCAATAGAATTTAGAGTATCAATACGAAGGAAGGTGAGGATGTACGCAGCTATGAATACGACAGTTAGCGAGCAGCAACAATTGCATCCCAATGTGGTGCCATATTGGCGAATTTATCGTCTTTTCTCTGCATTGAAGCGGACTGCACTGGCAAGCATCCCGATCATCGTTTATTTGATGTGGTTGCCCCAATGGAAGTGGATCCTATATGTTGCTGCCGCCTATCTCTTGTTTCATTGGAGCAAGGACGTATTCTATATCATATATGGAGTTCGCTTCAGCTATGTCCGAAGAAGTTACGTTCTGACAAAGGATGAGATT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 2566011-2567305 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALJM010000006.1 Paenibacillus thiaminolyticus strain Mbale tig00000093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 2566011 32 100.0 34 ................................ GGTATGGTGCCATCCTGGAGGAAGGCTCCAAACC 2566077 32 100.0 34 ................................ AAGACGTTTTTTGAGATTGGATCGGCAATTGGTA 2566143 32 100.0 33 ................................ TGGTGAAAAGTAAGCCTTTGTGCCGTGAATAAC 2566208 32 100.0 35 ................................ GCTTCAAAGGCATTCAATGAACTTTGGAAGCACTA 2566275 32 100.0 33 ................................ ACCAATTTGTAGCACCGTCTGCTTGTCGTTGGA 2566340 32 100.0 35 ................................ TCCATTTCCTTAGCAAGCCGGGCTTTCATGCGGTT 2566407 32 100.0 34 ................................ TTCGCTGCTTTCCCGTAGCTGGATAGGCTCTTCT 2566473 32 100.0 33 ................................ ATGATTGGGTCGACGACGCCGGACCATAAATCG 2566538 32 100.0 35 ................................ CATCAAGCCATGGAGGTTGTATCTGCGAGAGAGGT 2566605 32 100.0 36 ................................ CAAGGATGACACCGTCATCCAGCTCACGATCGGCAG 2566673 32 100.0 34 ................................ AATCGGTCCGCTGGCGGTATCGAAACCATTGCCG 2566739 32 100.0 36 ................................ GTTGACAAATTCGTACTCGTACGGCTCGCCACGCTT 2566807 32 100.0 35 ................................ TGGAAGTGATCATCAACTATGCCGGCACCGCCTTC 2566874 32 100.0 32 ................................ CCATCGCGGCCCTTTTGGCTTGCTAATAAAAT 2566938 32 100.0 34 ................................ AGCCGTCGTGCCGAAGCAGACCGGGGAGCTGGAG 2567004 32 100.0 36 ................................ GGTATCCATCGGCGTCCACTCTTCCGTGTTGCCATC 2567072 32 100.0 35 ................................ TGCATTAGGAGCGCCCCCGTGTCCATGGTCCGCTG 2567139 32 100.0 37 ................................ CATCATGGGTAATGATCTTGCAGATATCCGTATCAGC 2567208 32 100.0 35 ................................ CCTACATGCGCTTCAAGAACTGGTCCAGTCTTACG 2567275 31 90.6 0 ..............A.......-.C....... | ========== ====== ====== ====== ================================ ===================================== ================== 20 32 99.5 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TATGGAAGTAGGTGTTTAGATTGCTAGTGTTAATCACATATGATGTAAAGACAACGACCAGTGCGGGCCAACGAAGGCTGCGCAGAGTCTCAAAACTGTGCCAGAACTACGGCCAGAGAGTTCAAAACTCCGTCTTTGAATGTAATGTAGACGCTGCTCAATTCGCCAGCCTGAAGATTCAATTGGCGGATATTATAGATCAAAAGGAAGACAGCCTGCGCTTCTATCAATTGGGGAACAACTATAAAAACAAGGTTGACCATATCGGCGTGAAAGAATCAATTGATATGGAAGGGCCACTAATTATCTAGTGCGAATGTAGAGTGCACATGAAATCCCTGGGGGATTCGCACCATGTTTTTTCTATATTATAGGCAAAATCCATTATATGGTTTGTTGCGAAAATGAAAAAGACCTATTTTTAGCTATATTCTATAGCCCTTTTGATTAATTCCATCATAATTAAGAACGAAATGTGATTTTCACAATCATTTTTCGCT # Right flank : TTCGTCCTAGAGTTTTTATACGAACGAGAAGTCGTCGCATTCGATGCAGGGTTCGATTGGGTATGCTAAAAATAGAGTAGGGGATTTATTCCTCTTTTCTAATTCTGAAAAGTTACAAAGTTATTGTTAATAAAGCAATAGAAGCTATACTTCAGGTCGGTTAGGACTTGAGGAATAGCTTCTATCTCTTTTCATAGCCTTTATATTAATATTTCAATCCGCGCCTTTTGGCGACACTACTATCGCATTTATTGTAAGGGGAGCGTGTACTATAATCAATAGCTTCAAAATTGATCCTTCGATATTTACAAATACCTCCATCTTGTGTAAGATAACAATGAACTAGTTCATTAAAATAAAAGCTATACTATAAAGAACTATGAATTTAAGCTGATCCATTTTACCTAGCTATGATTGTTGAAGATCTTCATAATGCTAATCAGTGCCCTATGATAATTAATGGGGACGTGCAGTACCCAGCTATGATTTGCTTGATGTAA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //