Array 1 5-581 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVLL01000114.1 Rothia mucilaginosa strain 328_RMUC 469_1750_16412, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 ............................ GCGTGCTTCTGAGCAGAGTCAGTCTCAGGGTCA 66 28 92.9 33 G..C........................ CAAGGCGGCATTCGGCATGGGTGGAGACGCAAA 127 28 92.9 33 G..C........................ TGCGTTGTCCGTCTGGATATGGTTCAGGTCGGT 188 28 89.3 33 G..C.....A.................. GAAGGGAGGCAATCAATGGGCCGTGTTGTAAAG 249 28 100.0 33 ............................ GACGGCACACCCCGACTTCTGGACGGAGCTCGT 310 28 96.4 33 .............T.............. GGGCAGGGCTCCCTCTGCTCCCTCCCTCGCCCC 371 28 92.9 33 G.........T................. CTTGGACGCGGCACAAGACCTGGAAGCCGCGCA 432 28 96.4 33 G........................... CTTCTGGCGCATACGCTCGAACTCGTCGCTAAA 493 28 100.0 33 ............................ GAGGAGGGTCTTCTCGTACGAGAGCTCTTTGGC 554 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.1 33 ATGTTCCCCGCGCGAGCGGGGATGAGCC # Left flank : CGAAA # Right flank : CCTATATCAAGGGTAATAATGAAAGAAACTCAACGTATTCCCCGCACCCGCGGGGCATAGGTACGGCCCCTCGGCCCGCAGCAATAAGCTGCAGGTCGAGGGGCCTCCTCATGCATTAGCTGATAGAAAGGTCAGCCCTAGAAAACTAGGAAACCGCCCCTTACGCCACCGCCAGGGTGCCCTTGGTTGCGGTGCCGCTTCGGGTCCACAGCAGGAGCGCCGCCACGCTGTTGATGATGTAGAAAATGTACTTGCCGACGTTCGCGAAGTTGCCCTGGGTTAGCGACTTCACGCACTGCACTGTGTTGTACAGGAACCAGAATTGCCACTGCATCGTGAGCTTGAGCGCGTTCAGAATGTTTGCTGACAGGGAGAGGCCAAACACTACGGTCGTGATCCAGAACAGGAACGAGGTCTTGCCGCCGTAGCCAATGTAGTTCGCGACCAGGGAGAACGCGAACGAGCCCACCACAATACCGCTAATAATCAGCTGACCCTTA # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCGAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTGCCCCGCGCGAGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10329-11090 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVLL01000108.1 Rothia mucilaginosa strain 328_RMUC 438_11099_115266, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 10329 29 89.7 32 G...........T............A... TACCTCCCGGAACCCAGCTGGCAAATCACGGG 10390 29 96.6 32 .............A............... CGTTGCGGGCTTTCGGGGTCGGTGTTTTGTGC 10451 29 96.6 32 ............................T GTGGCGCTGATGGGCACTGGTGCGGCTTCCTG 10512 29 96.6 32 .........................A... AACCCGCCGGTACAGTCCCCCCCGGAGAGTCT 10573 29 82.8 32 G........A..TT..T............ GATTCGGTGGAATTGCGCACCGCAGCGCTAGT 10634 29 89.7 32 G.........T....A............. AACCCCACCTTTGATGAGGTCAAGCTTCAAGA 10695 29 93.1 32 G.A.......................... AACGGCGACCGCTGGAACGTCGAAGCGGTAAA 10756 29 96.6 32 ...................T......... GGGGTGAATCTTCCTTCTCGCCCCGCTAGTGT 10817 29 96.6 32 ..........T.................. GACTGGATGGATTGGCGGGAGAAGAACCCGCG 10878 29 100.0 32 ............................. GAGCTTTCGGATTTGGCGTTGACTTTGAAGCA 10939 29 89.7 33 G..C........T................ AATCAGACCTATAGGGCTTTCGTCGCGCGCCCA 11001 29 100.0 32 ............................. AAGCCCGCGAAGAAGCCCGGCGGGTACTCTCT 11062 29 93.1 0 G..C......................... | ========== ====== ====== ====== ============================= ================================= ================== 13 29 93.9 32 ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Left flank : CATACTCGCCCTGGTGAGAGCGTTCATTATGGTCGTCTGTTGGCGAAGCTGGAGAACGGTCAGGAGTGGGCTTTCCGTCTTGCGGCGAACCCGGTGAAGCGTCATACGAATCAGCAGACGGGTAAGCGTGAAGTGTTCCCGCACGTGACTGTTGCGCAGCAGCAGGCGTGGATCCGTGAGCGTGCTCCGCAGTGGGGGTTTGAAGTGATTCCTGCTGTTGAGGGTCAGGATATTGAGGAGTGCCCTATGGTTTCTTCTCGTCAGGACCTTGCGTTTGCACGTCGTAACGCTGAGGGCAAGGTTGGTAAGGTGAGTCACCGTAAGGCTCAGTTTGATGGTGCTCTTCGCATCACTGATGTTGAGCTGTTCCGTAAGTCTCTGCTCGCTGGCATGGGCAGGGGTAAGGCGTACGGTATGGGCCTTCTAACGTTGGTGCCTCTGTCCCGATGAGTGCCGTGGAGTAGAGGGGGAGCTAATCTGCGCGGGACAATGTTCTGCAT # Right flank : CCGTGCTCG # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCCGCGCGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.50,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //