Array 1 856483-856843 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084711.1 Bacillus pumilus strain AR03 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 856483 32 100.0 34 ................................ TAATACCACAATCAAAATTGCCGTCAATCATTTT 856549 32 96.9 33 ...........A.................... GATATTCCGTGCTTTGATTAATGCATAATAAGG 856614 32 100.0 34 ................................ TTTTATTGTGTTATCTTTAGTGAATTTTCTCATT 856680 32 96.9 33 .......................A........ CTGCGCATGTCGCAACCATCCTTTTTAGTCGTG 856745 32 96.9 35 ...........T.................... ATTGACGCTTTACTTTCATATAGGCTGTCATAGTC 856812 32 90.6 0 .............A......A..........A | ========== ====== ====== ====== ================================ =================================== ================== 6 32 96.9 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : ATGAAGGAAATAGCCGACCGGCTAGGCGAAACGAGACAAAATATCTCAAACATACACAAAAAAGCGCTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGAACGAAGAAAAAATGACCAATGGGGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAATAGACCGGCTGATTTACCAAGAAGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGTTGTAAGAGGAACTGATGGTGCGAATGTCAGGTGAACATAAAATCCCCGGTGCATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTTTATAAAGGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCAGAAATCGCT # Right flank : ATTTGAATTGGCAGCATCATAGACCAAGTAACCCCAGAACTGGCTCAGTAGTCCATATTTTTAAATGAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAAATTATATTTTATGAAAGGGAAAAACAAAATTCTTTATTGAAATTTGAGGATTTTGACTATCATTTCCTAAAAAATGTTATAATTTAGGGAAGAAATCGCAGTCGCACTCTAAATGAGTGCGTGGATTGAAATGACACCGAACAAACATTCTGTTAAAATGTTTTTGGTCGCACTCTACATGAGTGTGTGGATTGAAATATGTATCCAGAAATCATCGACTTTCTAATTTGTGTCGCACTCTACATGAGTGCGTGGATTGAAATGTGATCGGCACGAGA # Questionable array : NO Score: 8.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 857165-857393 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084711.1 Bacillus pumilus strain AR03 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 857165 32 96.9 34 ...........A.................... GACACCGAACAAACATTCTGTTAAAATGTTTTTG 857231 32 96.9 33 ...................T............ ATGTATCCAGAAATCATCGACTTTCTAATTTGT 857296 32 100.0 34 ................................ GTGATCGGCACGAGACCCACGTGCATATGGGGTG 857362 32 84.4 0 ...........T.......T.A...A.A.... | ========== ====== ====== ====== ================================ ================================== ================== 4 32 94.6 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GTGAATTTTCTCATTGTCGCACTCTACATGAGTGCGTGAATTGAAATCTGCGCATGTCGCAACCATCCTTTTTAGTCGTGGTCGCACTCTATATGAGTGCGTGGATTGAAATATTGACGCTTTACTTTCATATAGGCTGTCATAGTCGTCGCACTCTACAAGAGTGCATGGATTGAAAATTTGAATTGGCAGCATCATAGACCAAGTAACCCCAGAACTGGCTCAGTAGTCCATATTTTTAAATGAATTCAAAGCTGTTGATGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAAATTATATTTTATGAAAGGGAAAAACAAAATTCTTTATTGAAATTTGAGGATTTTGACTATCATTTCCTAAAAAATGTTATAATTTAGGGAAGAAATCGCA # Right flank : TTCTTGTCAGTAGGTAGCTTGAAAGATTTATTGACATTGCGCTTGATATAGGTGTGAAAAACATAAATCTGTCTCAGCCATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAGTAGTAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTCATTCGACAAAATTGAGAAAAAATGTATATTATTTAAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATGATTCCCTAAAAACTGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATCTGAAAGTGTTCTCACTGTACGGATGTCATAAAGTCGCACTCTATATGAGTGCGTGGATTGAAATTTCGAATAGCTTTCCAGAGATAACAAGTCTCCCTGTCGCACTCTATATGAGTGTGAG # Questionable array : NO Score: 6.78 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 858232-858396 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084711.1 Bacillus pumilus strain AR03 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 858232 32 100.0 36 ................................ AATCTGTCACTGAAATCATCTATTGAAAAATCGCGA 858300 32 100.0 33 ................................ ATATAGCCGTTGTCTTTTTGGTCGACCCAGCGA 858365 32 84.4 0 ...................TA..A.....GG. | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 94.8 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : AATCGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATCTGAAAGTGTTCTCACTGTACGGATGTCATAAAGTCGCACTCTATATGAGTGCGTGGATTGAAATTTCGAATAGCTTTCCAGAGATAACAAGTCTCCCTGTCGCACTCTATATGAGTGTGAGGAATAAAATTCTTGTCAGAAGGTAGTTTGAAAGATATATTGACAATTGCGCTTGATATAGGTGTGAAAAACATAACTCTGTCTCACCAATTTTATTAATGAATTCAAAGCTGTTGATGAAATAATGAATAAGTATCTTTAGAGCAATTAAATAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAAAAAATGTATATTATTTAGAGGTGAAAACAAAATTCCATATAGAAAATTGAGGGTTTTGGCTATCATTCCCTAAAGAATGTTATAATTAAGGCAGAAATCGCA # Right flank : TAGCTTGGAAGAAATGTTGACAGTTGCGCTTGATTTAAGTGTGAAAAACGTTACTCTGGCTCAGTAGTCATCTTTTTAAATGAATTCAAACCTGTTGATGAAATAATGTATAAGTACTTTTAGAGCAATAGCTTTTAATTAAATAGGATTAAGAAAAATTTGTTGCGAATGTGAGGTGAACATAAAAACCCCAGGACATTCGCACCTTTTTATTAGAAAAAATGAGAAAAAATGTATATTTTATGAAGAAGAAAACAAAATCCTATATTGAAATTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCGAAAATCGCAGTCGCACTCTATGTGAGTGCGTGGATTGAATATGCTAAAACACCGACCTTTCTTCGGATCGCATCGTCGCACTCTATGTGAGTGCGTGAATTGAAATTTTGCTAATCCTGTTGCTTCAACAACCGTTGACAGTCGCACTCTACATGAGTGCGTGAATTGAAATAGAATGG # Questionable array : NO Score: 8.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.88%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 867637-867865 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP084711.1 Bacillus pumilus strain AR03 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 867637 32 100.0 34 ................................ TAATCGTGACCCGCTGCTCAGGTGACATGTAGTG 867703 32 100.0 34 ................................ TACAATCTTCCCAACCTATACTTGAAAGAACTTT 867769 32 93.8 33 ......T....C.................... CTATTAAAAGCGCTATATGCCTCTAACAGCTCC 867834 32 93.8 0 ...........CG................... | ========== ====== ====== ====== ================================ ================================== ================== 4 32 96.9 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TTGACGATCATCCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCAGTCGCACTCTACGTGAGTGCGTGGATTGAAATCATCAATTATACTTGAAATAAATAAAGCGATTAAAAGTCGCACTCTACATGAGTGCGTGGATTGAAATCCCTTCAGGGGATGATTTTTCCCTTTTGACATGTGTCGCACTCTACATGAGTGTGTAGATTAATAATTGCGAAAAACATAACTCTGCCTCTCAGTAGTCATGTATTTAATTAAATTCAAAGTTGTTGCTGAAATAATAAATATGATTATCAAGATTCAAATAGTTTTCAGACTAGAAAAAGTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACTGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAGGAGTGAAAACAAAATTCTATATAGAAACTTGAGGATTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGAGAAAATCGCA # Right flank : TGGTGAATGGTGGGAAAAGACAGGAAAGCCTGGTGTCGCACTCAACATAAGTGCATAGATCACTGTTTCTGCGAATTACATAAATTCAAATATCTATCCACTTCAAAATCTACACAAATGAATAATCAAAATAATGTACTTTCCCCCTAAATCCAGGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATTGCGACAAAAGGATAGTGCCCTTTGCTGCGGTAGCGCAAATCAATGAACCGCACTTCATAATGATCCTTGTATTTATCTACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCAGAAATGTTTTCATCTTGCTTGGCAATCTTCATAATTTCAGTATCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGACGACCTCTCCATTCATACT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //